Wall clock time and date at job start Mon Mar 30 2020 02:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38045 * 120.04620 * 2 1 4 4 C 1.38330 * 120.08734 * 179.71936 * 3 2 1 5 5 C 1.38331 * 120.18447 * 0.25966 * 4 3 2 6 6 C 1.38048 * 120.08546 * 359.97438 * 5 4 3 7 7 C 1.50706 * 120.04445 * 180.02562 * 6 5 4 8 8 C 1.39083 * 119.91270 * 359.97438 * 6 5 4 9 9 N 1.39295 * 120.09160 * 179.97438 * 8 6 5 10 10 C 1.46497 * 120.00342 * 90.80825 * 9 8 6 11 11 C 1.36858 * 119.99637 * 270.81014 * 9 8 6 12 12 H 1.07991 * 120.00376 * 331.12975 * 11 9 8 13 13 C 1.38798 * 119.99459 * 151.12464 * 11 9 8 14 14 N 1.31589 * 119.99534 * 159.99186 * 13 11 9 15 15 Si 1.86800 * 120.00377 * 339.99244 * 13 11 9 16 16 H 1.48494 * 109.47093 * 93.41602 * 15 13 11 17 17 H 1.48497 * 109.46963 * 213.41446 * 15 13 11 18 18 H 1.48498 * 109.46978 * 333.40961 * 15 13 11 19 19 H 1.09003 * 109.47065 * 89.99613 * 1 2 3 20 20 H 1.09001 * 109.47416 * 209.99605 * 1 2 3 21 21 H 1.08996 * 109.46817 * 329.99680 * 1 2 3 22 22 H 1.07999 * 119.95450 * 0.02562 * 3 2 1 23 23 H 1.08008 * 119.91060 * 180.23538 * 4 3 2 24 24 H 1.07999 * 119.95682 * 180.02562 * 5 4 3 25 25 H 1.09003 * 109.46898 * 94.52986 * 7 6 5 26 26 H 1.08998 * 109.46767 * 214.53049 * 7 6 5 27 27 H 1.09000 * 109.47201 * 334.53181 * 7 6 5 28 28 H 1.09005 * 109.47031 * 87.16778 * 10 9 8 29 29 H 1.09003 * 109.47279 * 207.16474 * 10 9 8 30 30 H 1.08995 * 109.46864 * 327.17234 * 10 9 8 31 31 H 0.97001 * 120.00042 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1949 0.0000 4 6 3.5815 1.1959 0.0059 5 6 4.2778 0.0007 0.0063 6 6 3.5941 -1.1986 0.0015 7 6 4.3537 -2.5002 0.0026 8 6 2.2033 -1.2040 -0.0034 9 7 1.5096 -2.4119 -0.0088 10 6 1.1249 -3.0415 1.2568 11 6 1.1876 -3.0106 -1.1966 12 1 1.0286 -2.4088 -2.0790 13 6 1.0653 -4.3914 -1.2670 14 7 0.3921 -4.9428 -2.2540 15 14 1.8564 -5.4670 0.0394 16 1 0.8673 -5.7554 1.1088 17 1 2.3068 -6.7417 -0.5750 18 1 3.0241 -4.7591 0.6229 19 1 -0.3633 0.0001 -1.0277 20 1 -0.3634 -0.8900 0.5138 21 1 -0.3633 0.8899 0.5139 22 1 1.6582 2.1303 0.0004 23 1 4.1194 2.1326 0.0097 24 1 5.3578 0.0058 0.0113 25 1 4.4624 -2.8565 1.0269 26 1 3.8081 -3.2397 -0.5835 27 1 5.3401 -2.3456 -0.4349 28 1 0.1610 -2.6482 1.5800 29 1 1.0492 -4.1200 1.1179 30 1 1.8782 -2.8246 2.0142 31 1 0.3063 -5.9077 -2.3031 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049805178.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:58 Heat of formation + Delta-G solvation = 53.492542 kcal Electronic energy + Delta-G solvation = -13585.923755 eV Core-core repulsion = 11447.290787 eV Total energy + Delta-G solvation = -2138.632968 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.12396 -35.50552 -32.84611 -31.81147 -30.04954 -27.04167 -26.01853 -25.85800 -23.21432 -20.17981 -20.01159 -16.94346 -16.03333 -15.45098 -14.95670 -14.45393 -13.35188 -13.17721 -12.79794 -12.52045 -12.40511 -12.33868 -12.25887 -12.02710 -11.55615 -11.16973 -10.91827 -10.56427 -10.50083 -10.25093 -9.94837 -9.40436 -8.64419 -7.92759 -7.74460 -7.14337 -6.01873 -3.42573 2.01583 2.06171 3.25351 3.42371 3.46339 4.38032 4.44793 4.93080 5.28541 5.43373 5.50531 5.57224 5.82580 6.03913 6.11507 6.17846 6.19228 6.29230 6.32423 6.37900 6.45634 6.56006 6.57840 6.80971 7.04327 7.07361 7.16920 7.51222 7.56459 7.97692 8.38847 8.96517 9.66809 10.00681 11.13379 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.038157 B = 0.013352 C = 0.011479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.630225 B = 2096.548307 C = 2438.743068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.098 4.098 3 C -0.128 4.128 4 C -0.139 4.139 5 C -0.129 4.129 6 C -0.097 4.097 7 C -0.108 4.108 8 C 0.206 3.794 9 N -0.574 5.574 10 C 0.112 3.888 11 C -0.261 4.261 12 H 0.086 0.914 13 C 0.029 3.971 14 N -0.902 5.902 15 Si 0.888 3.112 16 H -0.289 1.289 17 H -0.306 1.306 18 H -0.263 1.263 19 H 0.065 0.935 20 H 0.072 0.928 21 H 0.047 0.953 22 H 0.110 0.890 23 H 0.110 0.890 24 H 0.110 0.890 25 H 0.055 0.945 26 H 0.086 0.914 27 H 0.050 0.950 28 H 0.022 0.978 29 H 0.047 0.953 30 H 0.033 0.967 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.711 8.075 6.319 11.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.101 4.101 3 C -0.147 4.147 4 C -0.157 4.157 5 C -0.147 4.147 6 C -0.099 4.099 7 C -0.165 4.165 8 C 0.113 3.887 9 N -0.294 5.294 10 C -0.031 4.031 11 C -0.387 4.387 12 H 0.103 0.897 13 C -0.171 4.171 14 N -0.544 5.544 15 Si 0.721 3.279 16 H -0.218 1.218 17 H -0.235 1.235 18 H -0.188 1.188 19 H 0.084 0.916 20 H 0.091 0.909 21 H 0.066 0.934 22 H 0.128 0.872 23 H 0.128 0.872 24 H 0.128 0.872 25 H 0.074 0.926 26 H 0.105 0.895 27 H 0.069 0.931 28 H 0.040 0.960 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.626 7.875 6.225 11.053 hybrid contribution 0.429 -0.693 0.595 1.009 sum 5.055 7.182 6.820 11.119 Atomic orbital electron populations 1.20581 0.91416 1.01476 1.02092 1.20526 0.96425 0.92947 1.00179 1.20780 0.94035 0.96816 1.03086 1.20874 0.94177 0.97224 1.03449 1.20826 0.98803 0.92111 1.02999 1.20612 0.94538 0.94948 0.99807 1.20769 0.98446 0.95715 1.01531 1.17368 0.88849 0.87216 0.95310 1.41407 1.63512 1.21502 1.03025 1.21448 0.97431 0.97051 0.87162 1.18737 1.42261 0.89878 0.87868 0.89673 1.25246 0.98382 0.96554 0.96885 1.69800 1.40209 1.10982 1.33364 0.86903 0.80646 0.79453 0.80879 1.21834 1.23526 1.18782 0.91630 0.90885 0.93385 0.87150 0.87207 0.87214 0.92623 0.89523 0.93143 0.96015 0.93517 0.94796 0.92579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.79 9.77 36.00 0.35 -1.44 16 2 C -0.10 -1.92 5.90 -104.38 -0.62 -2.54 16 3 C -0.13 -2.16 9.69 -39.62 -0.38 -2.54 16 4 C -0.14 -2.22 10.04 -39.51 -0.40 -2.61 16 5 C -0.13 -2.20 9.68 -39.62 -0.38 -2.59 16 6 C -0.10 -1.94 5.90 -104.38 -0.62 -2.55 16 7 C -0.11 -2.10 9.19 36.01 0.33 -1.77 16 8 C 0.21 4.49 5.01 -83.84 -0.42 4.07 16 9 N -0.57 -13.74 0.96 -120.50 -0.12 -13.86 16 10 C 0.11 2.48 9.10 59.85 0.54 3.02 16 11 C -0.26 -7.22 9.34 -15.10 -0.14 -7.36 16 12 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 13 C 0.03 0.83 5.38 -17.45 -0.09 0.73 16 14 N -0.90 -27.28 13.97 55.49 0.77 -26.51 16 15 Si 0.89 21.90 23.73 -169.99 -4.03 17.86 16 16 H -0.29 -6.98 6.69 56.52 0.38 -6.60 16 17 H -0.31 -7.75 7.11 56.52 0.40 -7.34 16 18 H -0.26 -6.10 5.76 56.52 0.33 -5.78 16 19 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 20 H 0.07 1.43 6.36 -51.93 -0.33 1.10 16 21 H 0.05 0.72 8.09 -51.93 -0.42 0.30 16 22 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 23 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 24 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.09 1.95 5.34 -51.93 -0.28 1.68 16 27 H 0.05 0.84 8.06 -51.93 -0.42 0.42 16 28 H 0.02 0.45 7.27 -51.93 -0.38 0.07 16 29 H 0.05 1.10 1.99 -51.93 -0.10 0.99 16 30 H 0.03 0.67 8.07 -51.93 -0.42 0.25 16 31 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 249.22 15.07 3.76 3.76 Total: -1.00 -29.55 249.22 -5.56 -35.11 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -4.12 Total: -0.79 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -1.82 Total: -15.57 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: 0.66 Total: -40.36 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.03 Total: 17.86 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -29.55 -5.56 -35.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049805178.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.600 kcal (2) G-P(sol) polarization free energy of solvation -29.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds