Wall clock time and date at job start Mon Mar 30 2020 02:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38045 * 120.04620 * 2 1 4 4 C 1.38330 * 120.08734 * 179.71936 * 3 2 1 5 5 C 1.38331 * 120.18447 * 0.25966 * 4 3 2 6 6 C 1.38048 * 120.08546 * 359.97438 * 5 4 3 7 7 C 1.50706 * 120.04445 * 180.02562 * 6 5 4 8 8 C 1.39083 * 119.91270 * 359.97438 * 6 5 4 9 9 N 1.39295 * 120.09160 * 179.97438 * 8 6 5 10 10 C 1.46497 * 120.00342 * 90.80825 * 9 8 6 11 11 C 1.36858 * 119.99637 * 270.81014 * 9 8 6 12 12 H 1.07991 * 120.00376 * 331.12975 * 11 9 8 13 13 C 1.38798 * 119.99459 * 151.12464 * 11 9 8 14 14 N 1.31589 * 119.99534 * 159.99186 * 13 11 9 15 15 Si 1.86800 * 120.00377 * 339.99244 * 13 11 9 16 16 H 1.48494 * 109.47093 * 93.41602 * 15 13 11 17 17 H 1.48497 * 109.46963 * 213.41446 * 15 13 11 18 18 H 1.48498 * 109.46978 * 333.40961 * 15 13 11 19 19 H 1.09003 * 109.47065 * 89.99613 * 1 2 3 20 20 H 1.09001 * 109.47416 * 209.99605 * 1 2 3 21 21 H 1.08996 * 109.46817 * 329.99680 * 1 2 3 22 22 H 1.07999 * 119.95450 * 0.02562 * 3 2 1 23 23 H 1.08008 * 119.91060 * 180.23538 * 4 3 2 24 24 H 1.07999 * 119.95682 * 180.02562 * 5 4 3 25 25 H 1.09003 * 109.46898 * 94.52986 * 7 6 5 26 26 H 1.08998 * 109.46767 * 214.53049 * 7 6 5 27 27 H 1.09000 * 109.47201 * 334.53181 * 7 6 5 28 28 H 1.09005 * 109.47031 * 87.16778 * 10 9 8 29 29 H 1.09003 * 109.47279 * 207.16474 * 10 9 8 30 30 H 1.08995 * 109.46864 * 327.17234 * 10 9 8 31 31 H 0.97001 * 120.00042 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1949 0.0000 4 6 3.5815 1.1959 0.0059 5 6 4.2778 0.0007 0.0063 6 6 3.5941 -1.1986 0.0015 7 6 4.3537 -2.5002 0.0026 8 6 2.2033 -1.2040 -0.0034 9 7 1.5096 -2.4119 -0.0088 10 6 1.1249 -3.0415 1.2568 11 6 1.1876 -3.0106 -1.1966 12 1 1.0286 -2.4088 -2.0790 13 6 1.0653 -4.3914 -1.2670 14 7 0.3921 -4.9428 -2.2540 15 14 1.8564 -5.4670 0.0394 16 1 0.8673 -5.7554 1.1088 17 1 2.3068 -6.7417 -0.5750 18 1 3.0241 -4.7591 0.6229 19 1 -0.3633 0.0001 -1.0277 20 1 -0.3634 -0.8900 0.5138 21 1 -0.3633 0.8899 0.5139 22 1 1.6582 2.1303 0.0004 23 1 4.1194 2.1326 0.0097 24 1 5.3578 0.0058 0.0113 25 1 4.4624 -2.8565 1.0269 26 1 3.8081 -3.2397 -0.5835 27 1 5.3401 -2.3456 -0.4349 28 1 0.1610 -2.6482 1.5800 29 1 1.0492 -4.1200 1.1179 30 1 1.8782 -2.8246 2.0142 31 1 0.3063 -5.9077 -2.3031 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049805178.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:58 Heat of formation + Delta-G solvation = 36.624118 kcal Electronic energy + Delta-G solvation = -13586.655225 eV Core-core repulsion = 11447.290787 eV Total energy + Delta-G solvation = -2139.364438 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.60989 -37.23649 -34.27762 -33.83974 -31.59866 -28.63502 -27.81745 -27.36477 -24.98635 -21.73341 -21.43677 -18.97024 -17.85166 -17.08647 -16.54545 -15.88728 -14.98211 -14.75656 -14.48867 -14.43205 -14.15996 -13.92180 -13.68593 -13.48991 -13.35049 -12.68855 -12.35404 -12.23968 -12.09297 -11.92618 -11.83368 -11.29250 -10.70435 -9.31233 -9.21677 -9.08340 -8.20372 -5.57941 0.62194 0.64333 1.27276 1.40714 1.51764 2.37997 2.96477 3.05176 3.30334 4.10378 4.13721 4.27792 4.35400 4.52904 4.57969 4.64761 4.76675 4.81206 4.81874 4.87016 4.92616 5.07224 5.12026 5.33392 5.56532 5.71366 5.74057 5.83947 6.06350 6.10500 6.30621 6.96637 7.63972 7.99241 8.99229 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.038157 B = 0.013352 C = 0.011479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.630225 B = 2096.548307 C = 2438.743068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.118 4.118 3 C -0.126 4.126 4 C -0.127 4.127 5 C -0.126 4.126 6 C -0.117 4.117 7 C -0.105 4.105 8 C 0.161 3.839 9 N -0.578 5.578 10 C 0.110 3.890 11 C -0.243 4.243 12 H 0.040 0.960 13 C -0.028 4.028 14 N -0.954 5.954 15 Si 0.954 3.046 16 H -0.279 1.279 17 H -0.317 1.317 18 H -0.242 1.242 19 H 0.049 0.951 20 H 0.050 0.950 21 H 0.082 0.918 22 H 0.142 0.858 23 H 0.152 0.848 24 H 0.141 0.859 25 H 0.063 0.937 26 H 0.048 0.952 27 H 0.076 0.924 28 H 0.030 0.970 29 H 0.033 0.967 30 H 0.057 0.943 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.550 10.188 8.161 14.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.144 4.144 4 C -0.144 4.144 5 C -0.145 4.145 6 C -0.119 4.119 7 C -0.161 4.161 8 C 0.068 3.932 9 N -0.299 5.299 10 C -0.032 4.032 11 C -0.371 4.371 12 H 0.058 0.942 13 C -0.223 4.223 14 N -0.599 5.599 15 Si 0.785 3.215 16 H -0.208 1.208 17 H -0.247 1.247 18 H -0.165 1.165 19 H 0.068 0.932 20 H 0.069 0.931 21 H 0.101 0.899 22 H 0.160 0.840 23 H 0.169 0.831 24 H 0.158 0.842 25 H 0.081 0.919 26 H 0.067 0.933 27 H 0.095 0.905 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.484 10.032 8.104 14.434 hybrid contribution -0.135 -1.136 -0.007 1.144 sum 6.349 8.895 8.098 13.601 Atomic orbital electron populations 1.20525 0.91239 1.02063 1.01209 1.20722 0.96934 0.93429 1.00878 1.21154 0.94848 0.96865 1.01519 1.21374 0.93948 0.98512 1.00593 1.21175 1.00427 0.91316 1.01565 1.20751 0.93958 0.96396 1.00785 1.20712 0.99186 0.94749 1.01489 1.17723 0.89950 0.86799 0.98703 1.41280 1.64221 1.22239 1.02112 1.21496 0.98738 0.96024 0.86971 1.18466 1.40853 0.89607 0.88200 0.94169 1.25870 0.99094 0.97850 0.99522 1.69943 1.42533 1.11109 1.36286 0.85833 0.80380 0.76956 0.78330 1.20782 1.24659 1.16537 0.93231 0.93122 0.89926 0.84013 0.83081 0.84158 0.91879 0.93258 0.90535 0.95148 0.94870 0.92426 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.34 9.77 71.24 0.70 -2.64 16 2 C -0.12 -4.41 5.90 -19.71 -0.12 -4.53 16 3 C -0.13 -3.74 9.69 22.25 0.22 -3.53 16 4 C -0.13 -3.41 10.04 22.31 0.22 -3.18 16 5 C -0.13 -3.82 9.68 22.25 0.22 -3.60 16 6 C -0.12 -4.45 5.90 -19.70 -0.12 -4.57 16 7 C -0.10 -3.88 9.19 71.24 0.65 -3.23 16 8 C 0.16 6.90 5.01 38.36 0.19 7.09 16 9 N -0.58 -27.88 0.96 -535.14 -0.51 -28.40 16 10 C 0.11 4.79 9.10 127.77 1.16 5.95 16 11 C -0.24 -13.99 9.34 84.04 0.79 -13.20 16 12 H 0.04 2.62 8.06 -2.92 -0.02 2.60 16 13 C -0.03 -1.65 5.38 84.86 0.46 -1.19 16 14 N -0.95 -60.29 13.97 21.65 0.30 -59.99 16 15 Si 0.95 46.30 23.73 68.60 1.63 47.93 16 16 H -0.28 -12.97 6.69 99.48 0.67 -12.30 16 17 H -0.32 -15.76 7.11 99.48 0.71 -15.05 16 18 H -0.24 -10.73 5.76 99.48 0.57 -10.16 16 19 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 20 H 0.05 1.99 6.36 -2.39 -0.02 1.98 16 21 H 0.08 2.29 8.09 -2.39 -0.02 2.27 16 22 H 0.14 3.31 8.06 -2.91 -0.02 3.28 16 23 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 24 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 25 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.05 2.19 5.34 -2.39 -0.01 2.18 16 27 H 0.08 2.35 8.06 -2.39 -0.02 2.33 16 28 H 0.03 1.25 7.27 -2.38 -0.02 1.23 16 29 H 0.03 1.53 1.99 -2.39 0.00 1.53 16 30 H 0.06 2.19 8.07 -2.39 -0.02 2.17 16 31 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -66.56 249.22 6.72 -59.84 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: 0.93 Total: 7.24 kcal Atomic # 6 Polarization: -31.00 SS G_CDS: 4.37 Total: -26.63 kcal Atomic # 7 Polarization: -88.17 SS G_CDS: -0.21 Total: -88.38 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 1.63 Total: 47.93 kcal Total: -66.56 6.72 -59.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049805178.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.466 kcal (2) G-P(sol) polarization free energy of solvation -66.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds