Wall clock time and date at job start Mon Mar 30 2020 02:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.46681 * 2 1 4 4 C 1.38942 * 120.03341 * 270.27323 * 3 2 1 5 5 N 1.39669 * 120.07555 * 0.02562 * 4 3 2 6 6 C 1.38891 * 119.84522 * 180.23149 * 4 3 2 7 7 C 1.38124 * 119.92625 * 359.51617 * 6 4 3 8 8 C 1.38263 * 120.07689 * 0.23748 * 7 6 4 9 9 C 1.38077 * 120.04128 * 90.00439 * 3 2 1 10 10 C 1.50699 * 119.95754 * 0.02562 * 9 3 2 11 11 C 1.50705 * 109.47210 * 84.98231 * 10 9 3 12 12 H 1.07998 * 119.99890 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99860 * 179.97438 * 11 10 9 14 14 N 1.31510 * 120.00467 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99687 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47051 * 60.00423 * 15 13 11 17 17 H 1.48499 * 109.47030 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47052 * 300.00379 * 15 13 11 19 19 H 1.09000 * 109.47385 * 300.00239 * 1 2 3 20 20 H 1.09000 * 109.47257 * 60.00034 * 1 2 3 21 21 H 1.09004 * 109.47265 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46942 * 240.00393 * 2 1 3 23 23 H 1.09000 * 109.47257 * 119.99966 * 2 1 3 24 24 H 0.97008 * 119.99486 * 180.22627 * 5 4 3 25 25 H 0.96995 * 120.00716 * 0.23282 * 5 4 3 26 26 H 1.08002 * 120.03885 * 179.80018 * 6 4 3 27 27 H 1.07999 * 119.96324 * 180.25041 * 7 6 4 28 28 H 1.07999 * 119.93031 * 180.02562 * 8 7 6 29 29 H 1.09007 * 109.46923 * 204.97685 * 10 9 3 30 30 H 1.08999 * 109.47779 * 324.97959 * 10 9 3 31 31 H 0.96995 * 120.00584 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2586 2.0785 -1.2029 5 7 2.0206 1.4243 -2.4137 6 6 2.7260 3.3863 -1.1983 7 6 2.9548 4.0322 0.0010 8 6 2.7236 3.3766 1.1962 9 6 2.2627 2.0726 1.1953 10 6 2.0122 1.3619 2.5004 11 6 3.2275 0.5523 2.8729 12 1 4.0944 0.5521 2.2287 13 6 3.2327 -0.1880 4.0360 14 7 2.1769 -0.1882 4.8201 15 14 4.7389 -1.1921 4.4973 16 1 5.9099 -0.2903 4.6409 17 1 4.4921 -1.8923 5.7834 18 1 5.0117 -2.1922 3.4340 19 1 -0.3634 0.5139 0.8899 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 2.1822 1.8834 -3.2529 25 1 1.6938 0.5111 -2.4157 26 1 2.9061 3.8993 -2.1315 27 1 3.3144 5.0505 0.0052 28 1 2.9029 3.8840 2.1325 29 1 1.8113 2.0958 3.2810 30 1 1.1530 0.6996 2.3945 31 1 2.1807 -0.7087 5.6385 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059996802.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:04 Heat of formation + Delta-G solvation = 1.056483 kcal Electronic energy + Delta-G solvation = -13137.459896 eV Core-core repulsion = 10996.553130 eV Total energy + Delta-G solvation = -2140.906767 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.07615 -34.44350 -33.77390 -32.41799 -29.98533 -27.71738 -26.80572 -23.60422 -22.70600 -20.35669 -19.72093 -16.65285 -16.31448 -15.82762 -14.91140 -14.41642 -13.95120 -13.42374 -12.87695 -12.80578 -12.40851 -12.08359 -11.61118 -11.28148 -11.15168 -11.04191 -10.66872 -10.51565 -10.25611 -9.98974 -9.92695 -9.33762 -9.27122 -8.36723 -7.63461 -6.85571 -5.99390 -4.02223 2.23384 2.42639 3.34450 3.38485 3.42165 4.34865 4.44553 4.69927 5.34599 5.51576 5.58057 5.75158 5.90577 6.06697 6.14067 6.24713 6.30773 6.47976 6.51572 6.74154 6.91371 7.02038 7.08748 7.34042 7.37663 7.57162 7.69570 7.97367 7.99430 8.11907 8.20879 8.39812 9.03101 9.60663 11.10283 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.034738 B = 0.010120 C = 0.009195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.840171 B = 2766.195044 C = 3044.500566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.078 4.078 3 C -0.156 4.156 4 C 0.208 3.792 5 N -0.886 5.886 6 C -0.225 4.225 7 C -0.084 4.084 8 C -0.178 4.178 9 C 0.008 3.992 10 C 0.046 3.954 11 C -0.505 4.505 12 H 0.056 0.944 13 C 0.059 3.941 14 N -0.894 5.894 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 H 0.059 0.941 20 H 0.042 0.958 21 H 0.047 0.953 22 H 0.047 0.953 23 H 0.097 0.903 24 H 0.389 0.611 25 H 0.394 0.606 26 H 0.105 0.895 27 H 0.108 0.892 28 H 0.112 0.888 29 H 0.025 0.975 30 H 0.034 0.966 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.295 2.813 -10.961 11.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.116 4.116 3 C -0.160 4.160 4 C 0.106 3.894 5 N -0.427 5.427 6 C -0.247 4.247 7 C -0.103 4.103 8 C -0.198 4.198 9 C 0.007 3.993 10 C 0.010 3.990 11 C -0.544 4.544 12 H 0.074 0.926 13 C -0.143 4.143 14 N -0.533 5.533 15 Si 0.720 3.280 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.202 1.202 19 H 0.078 0.922 20 H 0.061 0.939 21 H 0.067 0.933 22 H 0.066 0.934 23 H 0.115 0.885 24 H 0.215 0.785 25 H 0.223 0.777 26 H 0.123 0.877 27 H 0.126 0.874 28 H 0.130 0.870 29 H 0.044 0.956 30 H 0.052 0.948 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.360 2.758 -10.735 11.167 hybrid contribution 0.854 -0.633 -0.055 1.064 sum -0.507 2.125 -10.790 11.009 Atomic orbital electron populations 1.21715 0.96086 1.00603 1.01472 1.20353 0.94970 0.93453 1.02776 1.19198 1.08902 0.96917 0.91029 1.17600 0.94425 0.91463 0.85944 1.42444 1.77893 1.17497 1.04832 1.20251 1.12226 0.94551 0.97715 1.20715 0.98697 0.98551 0.92342 1.20854 1.06003 0.95753 0.97210 1.20324 0.90258 0.92567 0.96107 1.18393 0.97657 0.95072 0.87919 1.20982 1.00063 1.27206 1.06103 0.92611 1.24988 0.96099 0.96830 0.96347 1.69943 1.28691 1.41492 1.13210 0.86648 0.83352 0.80352 0.77639 1.20220 1.21314 1.20237 0.92196 0.93933 0.93342 0.93418 0.88481 0.78452 0.77727 0.87703 0.87425 0.86971 0.95638 0.94767 0.92884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.77 37.16 0.36 -2.00 16 2 C -0.08 -1.46 4.93 -27.88 -0.14 -1.60 16 3 C -0.16 -3.15 5.15 -104.42 -0.54 -3.69 16 4 C 0.21 3.67 6.74 -83.78 -0.56 3.11 16 5 N -0.89 -11.98 8.99 32.41 0.29 -11.69 16 6 C -0.22 -3.82 9.90 -39.38 -0.39 -4.21 16 7 C -0.08 -1.50 10.04 -39.61 -0.40 -1.90 16 8 C -0.18 -3.69 9.68 -39.55 -0.38 -4.07 16 9 C 0.01 0.18 5.07 -104.66 -0.53 -0.35 16 10 C 0.05 1.20 4.42 -29.03 -0.13 1.07 16 11 C -0.51 -14.12 8.32 -34.44 -0.29 -14.41 16 12 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 14 N -0.89 -26.31 13.29 55.43 0.74 -25.58 16 15 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H 0.06 1.10 7.31 -51.93 -0.38 0.72 16 20 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 21 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.05 0.78 6.57 -51.93 -0.34 0.44 16 23 H 0.10 2.14 6.16 -51.93 -0.32 1.82 16 24 H 0.39 4.22 8.84 -40.82 -0.36 3.86 16 25 H 0.39 4.94 6.84 -40.82 -0.28 4.66 16 26 H 0.10 1.50 8.06 -52.49 -0.42 1.07 16 27 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 28 H 0.11 2.27 8.06 -52.49 -0.42 1.84 16 29 H 0.03 0.70 8.05 -51.93 -0.42 0.28 16 30 H 0.03 0.91 6.06 -51.93 -0.31 0.60 16 31 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 258.93 15.07 3.90 3.90 Total: -1.00 -29.82 258.93 -7.25 -37.07 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -4.07 Total: 6.17 kcal Atomic # 6 Polarization: -23.41 SS G_CDS: -3.09 Total: -26.50 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: 1.03 Total: -37.26 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.82 -7.25 -37.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059996802.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.129 kcal (2) G-P(sol) polarization free energy of solvation -29.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds