Wall clock time and date at job start Mon Mar 30 2020 02:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.46681 * 2 1 4 4 C 1.38942 * 120.03341 * 270.27323 * 3 2 1 5 5 N 1.39669 * 120.07555 * 0.02562 * 4 3 2 6 6 C 1.38891 * 119.84522 * 180.23149 * 4 3 2 7 7 C 1.38124 * 119.92625 * 359.51617 * 6 4 3 8 8 C 1.38263 * 120.07689 * 0.23748 * 7 6 4 9 9 C 1.38077 * 120.04128 * 90.00439 * 3 2 1 10 10 C 1.50699 * 119.95754 * 0.02562 * 9 3 2 11 11 C 1.50705 * 109.47210 * 84.98231 * 10 9 3 12 12 H 1.07998 * 119.99890 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99860 * 179.97438 * 11 10 9 14 14 N 1.31510 * 120.00467 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99687 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47051 * 60.00423 * 15 13 11 17 17 H 1.48499 * 109.47030 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47052 * 300.00379 * 15 13 11 19 19 H 1.09000 * 109.47385 * 300.00239 * 1 2 3 20 20 H 1.09000 * 109.47257 * 60.00034 * 1 2 3 21 21 H 1.09004 * 109.47265 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46942 * 240.00393 * 2 1 3 23 23 H 1.09000 * 109.47257 * 119.99966 * 2 1 3 24 24 H 0.97008 * 119.99486 * 180.22627 * 5 4 3 25 25 H 0.96995 * 120.00716 * 0.23282 * 5 4 3 26 26 H 1.08002 * 120.03885 * 179.80018 * 6 4 3 27 27 H 1.07999 * 119.96324 * 180.25041 * 7 6 4 28 28 H 1.07999 * 119.93031 * 180.02562 * 8 7 6 29 29 H 1.09007 * 109.46923 * 204.97685 * 10 9 3 30 30 H 1.08999 * 109.47779 * 324.97959 * 10 9 3 31 31 H 0.96995 * 120.00584 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2586 2.0785 -1.2029 5 7 2.0206 1.4243 -2.4137 6 6 2.7260 3.3863 -1.1983 7 6 2.9548 4.0322 0.0010 8 6 2.7236 3.3766 1.1962 9 6 2.2627 2.0726 1.1953 10 6 2.0122 1.3619 2.5004 11 6 3.2275 0.5523 2.8729 12 1 4.0944 0.5521 2.2287 13 6 3.2327 -0.1880 4.0360 14 7 2.1769 -0.1882 4.8201 15 14 4.7389 -1.1921 4.4973 16 1 5.9099 -0.2903 4.6409 17 1 4.4921 -1.8923 5.7834 18 1 5.0117 -2.1922 3.4340 19 1 -0.3634 0.5139 0.8899 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 2.1822 1.8834 -3.2529 25 1 1.6938 0.5111 -2.4157 26 1 2.9061 3.8993 -2.1315 27 1 3.3144 5.0505 0.0052 28 1 2.9029 3.8840 2.1325 29 1 1.8113 2.0958 3.2810 30 1 1.1530 0.6996 2.3945 31 1 2.1807 -0.7087 5.6385 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059996802.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:03 Heat of formation + Delta-G solvation = -17.109214 kcal Electronic energy + Delta-G solvation = -13138.247620 eV Core-core repulsion = 10996.553130 eV Total energy + Delta-G solvation = -2141.694490 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.55072 -36.03979 -35.30248 -34.27382 -31.64586 -29.15277 -28.60343 -25.42476 -24.30505 -21.90525 -21.22789 -18.47409 -17.94303 -17.33527 -16.44460 -16.28631 -15.39157 -14.88666 -14.48721 -14.32979 -14.06471 -13.86742 -13.20146 -13.01486 -12.83500 -12.63295 -12.49316 -12.34305 -11.90329 -11.68186 -11.51550 -11.08590 -11.05244 -10.55589 -9.22544 -8.21686 -8.13342 -6.27843 0.75258 0.92502 1.39514 1.41900 1.50150 2.41639 3.13571 3.17258 3.18683 4.11044 4.18206 4.34149 4.45470 4.63624 4.71354 4.82562 4.83714 5.04310 5.09846 5.25934 5.33475 5.38333 5.51480 5.60694 5.65250 5.76844 5.88632 6.15171 6.25191 6.32836 6.77753 6.84114 7.17723 7.39174 8.92893 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.034738 B = 0.010120 C = 0.009195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.840171 B = 2766.195044 C = 3044.500566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.075 4.075 3 C -0.174 4.174 4 C 0.214 3.786 5 N -0.867 5.867 6 C -0.218 4.218 7 C -0.077 4.077 8 C -0.205 4.205 9 C -0.025 4.025 10 C 0.060 3.940 11 C -0.517 4.517 12 H 0.049 0.951 13 C 0.006 3.994 14 N -0.929 5.929 15 Si 0.960 3.040 16 H -0.271 1.271 17 H -0.280 1.280 18 H -0.267 1.267 19 H 0.031 0.969 20 H 0.064 0.936 21 H 0.064 0.936 22 H 0.075 0.925 23 H 0.054 0.946 24 H 0.407 0.593 25 H 0.401 0.599 26 H 0.144 0.856 27 H 0.141 0.859 28 H 0.101 0.899 29 H -0.008 1.008 30 H 0.014 0.986 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.369 2.958 -13.648 13.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.112 4.112 3 C -0.179 4.179 4 C 0.109 3.891 5 N -0.409 5.409 6 C -0.241 4.241 7 C -0.095 4.095 8 C -0.225 4.225 9 C -0.026 4.026 10 C 0.023 3.977 11 C -0.555 4.555 12 H 0.067 0.933 13 C -0.192 4.192 14 N -0.569 5.569 15 Si 0.784 3.216 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.192 1.192 19 H 0.050 0.950 20 H 0.083 0.917 21 H 0.083 0.917 22 H 0.093 0.907 23 H 0.073 0.927 24 H 0.237 0.763 25 H 0.231 0.769 26 H 0.162 0.838 27 H 0.159 0.841 28 H 0.119 0.881 29 H 0.010 0.990 30 H 0.032 0.968 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.438 2.898 -13.468 13.783 hybrid contribution 0.534 -0.630 0.681 1.071 sum 0.095 2.267 -12.787 12.986 Atomic orbital electron populations 1.21640 0.94712 1.01624 1.01113 1.20283 0.96186 0.92827 1.01938 1.19295 1.09689 0.97541 0.91367 1.17643 0.93305 0.91851 0.86277 1.42357 1.76591 1.17740 1.04196 1.20700 1.10304 0.94185 0.98893 1.21028 0.97312 0.99837 0.91354 1.20888 1.07717 0.95502 0.98408 1.20096 0.93446 0.93725 0.95307 1.18091 0.96368 0.93886 0.89389 1.21220 1.00429 1.27579 1.06229 0.93291 1.25858 0.99189 0.97935 0.96218 1.70070 1.30765 1.42426 1.13675 0.85581 0.79493 0.78852 0.77634 1.19572 1.20560 1.19230 0.95004 0.91682 0.91659 0.90670 0.92748 0.76330 0.76920 0.83810 0.84122 0.88113 0.99012 0.96807 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.40 9.77 71.98 0.70 -3.70 16 2 C -0.07 -2.80 4.93 29.85 0.15 -2.65 16 3 C -0.17 -6.97 5.15 -19.73 -0.10 -7.07 16 4 C 0.21 6.93 6.74 38.22 0.26 7.18 16 5 N -0.87 -19.81 8.99 -51.37 -0.46 -20.27 16 6 C -0.22 -6.58 9.90 22.40 0.22 -6.35 16 7 C -0.08 -2.56 10.04 22.25 0.22 -2.34 16 8 C -0.21 -8.63 9.68 22.29 0.22 -8.41 16 9 C -0.03 -1.17 5.07 -19.89 -0.10 -1.27 16 10 C 0.06 3.29 4.42 29.10 0.13 3.42 16 11 C -0.52 -30.15 8.32 25.60 0.21 -29.94 16 12 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 13 C 0.01 0.35 5.46 84.66 0.46 0.81 16 14 N -0.93 -56.76 13.29 21.45 0.28 -56.48 16 15 Si 0.96 45.10 29.54 68.60 2.03 47.12 16 16 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 17 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 18 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 19 H 0.03 1.20 7.31 -2.39 -0.02 1.18 16 20 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 21 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 22 H 0.07 2.32 6.57 -2.39 -0.02 2.30 16 23 H 0.05 2.49 6.16 -2.39 -0.01 2.48 16 24 H 0.41 6.74 8.84 -92.70 -0.82 5.92 16 25 H 0.40 8.42 6.84 -92.71 -0.63 7.79 16 26 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 27 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 28 H 0.10 4.29 8.06 -2.91 -0.02 4.27 16 29 H -0.01 -0.51 8.05 -2.38 -0.02 -0.53 16 30 H 0.01 0.80 6.06 -2.39 -0.01 0.78 16 31 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -66.96 258.93 3.90 -63.05 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -0.32 Total: 16.90 kcal Atomic # 6 Polarization: -52.69 SS G_CDS: 2.37 Total: -50.32 kcal Atomic # 7 Polarization: -76.57 SS G_CDS: -0.18 Total: -76.75 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -66.96 3.90 -63.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059996802.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.944 kcal (2) G-P(sol) polarization free energy of solvation -66.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds