Wall clock time and date at job start Mon Mar 30 2020 02:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50693 * 109.47229 * 2 1 4 4 C 1.38233 * 120.00207 * 89.99423 * 3 2 1 5 5 C 1.38234 * 120.00037 * 179.72405 * 4 3 2 6 6 C 1.38234 * 120.00240 * 0.26327 * 5 4 3 7 7 C 1.50701 * 120.00243 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.47140 * 340.00196 * 7 6 5 9 9 N 1.46904 * 109.47222 * 219.99969 * 7 6 5 10 10 C 1.50705 * 109.47028 * 99.99815 * 7 6 5 11 11 H 1.07997 * 119.99635 * 0.02562 * 10 7 6 12 12 C 1.37873 * 119.99942 * 179.97438 * 10 7 6 13 13 N 1.31517 * 120.00133 * 0.02562 * 12 10 7 14 14 Si 1.86794 * 120.00057 * 179.97438 * 12 10 7 15 15 H 1.48506 * 109.46991 * 90.00803 * 14 12 10 16 16 H 1.48504 * 109.47539 * 210.00691 * 14 12 10 17 17 H 1.48495 * 109.47343 * 330.00750 * 14 12 10 18 18 C 1.38238 * 119.99693 * 359.97438 * 6 5 4 19 19 C 1.38234 * 120.00082 * 0.02562 * 18 6 5 20 20 H 1.09004 * 109.47454 * 300.00132 * 1 2 3 21 21 H 1.09006 * 109.47180 * 60.00059 * 1 2 3 22 22 H 1.09004 * 109.47511 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47015 * 240.00030 * 2 1 3 24 24 H 1.09001 * 109.46743 * 119.99783 * 2 1 3 25 25 H 1.08002 * 120.00157 * 0.02562 * 4 3 2 26 26 H 1.07999 * 120.00009 * 180.28389 * 5 4 3 27 27 H 1.00896 * 110.99694 * 176.04499 * 9 7 6 28 28 H 1.00904 * 110.99702 * 299.99720 * 9 7 6 29 29 H 0.96992 * 119.99876 * 179.97438 * 13 12 10 30 30 H 1.08001 * 119.99643 * 179.97438 * 18 6 5 31 31 H 1.07999 * 120.00025 * 179.97438 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2626 2.0725 1.1971 5 6 2.7288 3.3738 1.1971 6 6 2.9596 4.0253 -0.0001 7 6 3.4685 5.4438 -0.0001 8 1 3.2624 5.9038 0.9664 9 7 2.7935 6.2062 -1.0590 10 6 4.9546 5.4444 -0.2500 11 1 5.4781 4.5109 -0.3948 12 6 5.6457 6.6366 -0.2949 13 7 5.0080 7.7733 -0.1191 14 14 7.4879 6.6373 -0.6040 15 1 7.7447 6.7198 -2.0643 16 1 8.1032 7.8067 0.0737 17 1 8.0804 5.3859 -0.0671 18 6 2.7246 3.3753 -1.1972 19 6 2.2584 2.0739 -1.1972 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8932 -0.5138 0.8900 25 1 2.0829 1.5633 2.1325 26 1 2.9131 3.8814 2.1324 27 1 3.0698 7.1763 -1.0383 28 1 2.9693 5.7994 -1.9655 29 1 5.4943 8.6120 -0.1503 30 1 2.9045 3.8845 -2.1325 31 1 2.0744 1.5662 -2.1325 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071496850.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:17 Heat of formation + Delta-G solvation = 1.187756 kcal Electronic energy + Delta-G solvation = -12831.374997 eV Core-core repulsion = 10690.473923 eV Total energy + Delta-G solvation = -2140.901074 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.82423 -35.21610 -33.13291 -31.14648 -30.19038 -28.37834 -25.90758 -23.75084 -22.02651 -21.33937 -19.51465 -16.50166 -15.87742 -15.02257 -14.75469 -14.21656 -13.78102 -13.40660 -13.11436 -12.87054 -12.58128 -12.25533 -11.81191 -11.50094 -11.10424 -10.99393 -10.89268 -10.79863 -10.49335 -10.17603 -9.95394 -9.52426 -8.66173 -8.18893 -7.74130 -7.16392 -6.08401 -4.25627 2.14321 2.16265 3.21921 3.29378 3.33938 4.30460 4.57413 5.12867 5.13311 5.18009 5.54992 5.62631 5.64539 5.80396 5.95107 5.99118 6.01866 6.30028 6.32606 6.37687 6.69223 6.73355 6.82089 7.19463 7.23119 7.29499 7.73005 7.74729 7.87259 8.12152 8.67960 8.94020 9.12599 9.46267 10.88608 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.055494 B = 0.007647 C = 0.007368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.440362 B = 3660.620161 C = 3799.256802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.077 4.077 3 C -0.116 4.116 4 C -0.121 4.121 5 C -0.124 4.124 6 C -0.026 4.026 7 C 0.238 3.762 8 H 0.046 0.954 9 N -0.850 5.850 10 C -0.542 4.542 11 H 0.056 0.944 12 C 0.065 3.935 13 N -0.894 5.894 14 Si 0.897 3.103 15 H -0.280 1.280 16 H -0.285 1.285 17 H -0.274 1.274 18 C -0.108 4.108 19 C -0.123 4.123 20 H 0.054 0.946 21 H 0.054 0.946 22 H 0.050 0.950 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.109 0.891 26 H 0.115 0.885 27 H 0.355 0.645 28 H 0.311 0.689 29 H 0.265 0.735 30 H 0.116 0.884 31 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.192 -10.366 -0.379 11.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 C -0.116 4.116 4 C -0.140 4.140 5 C -0.143 4.143 6 C -0.026 4.026 7 C 0.128 3.872 8 H 0.064 0.936 9 N -0.379 5.379 10 C -0.582 4.582 11 H 0.074 0.926 12 C -0.137 4.137 13 N -0.533 5.533 14 Si 0.725 3.275 15 H -0.206 1.206 16 H -0.211 1.211 17 H -0.198 1.198 18 C -0.126 4.126 19 C -0.141 4.141 20 H 0.073 0.927 21 H 0.073 0.927 22 H 0.069 0.931 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.127 0.873 26 H 0.133 0.867 27 H 0.171 0.829 28 H 0.120 0.880 29 H 0.075 0.925 30 H 0.134 0.866 31 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.850 -10.346 0.028 11.885 hybrid contribution 2.143 0.301 -0.487 2.218 sum -3.706 -10.045 -0.459 10.717 Atomic orbital electron populations 1.21748 0.95419 1.00850 1.02203 1.20420 0.95652 0.93508 1.01884 1.19605 1.02712 0.95797 0.93457 1.20827 1.01294 0.95120 0.96719 1.21009 1.00487 0.94653 0.98134 1.20464 0.92385 0.97743 0.92045 1.18020 0.90603 0.85157 0.93424 0.93636 1.59540 1.63381 1.08823 1.06200 1.21839 0.93743 0.92885 1.49752 0.92604 1.25028 0.98715 0.95463 0.94487 1.69747 1.36176 0.97586 1.49827 0.86511 0.84998 0.77694 0.78325 1.20605 1.21065 1.19846 1.20910 0.99427 0.93907 0.98388 1.20882 1.01291 0.95256 0.96692 0.92696 0.92664 0.93101 0.91777 0.91792 0.87339 0.86740 0.82914 0.87964 0.92469 0.86603 0.87374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.89 37.16 0.37 -1.28 16 2 C -0.08 -0.98 6.06 -27.89 -0.17 -1.15 16 3 C -0.12 -1.90 5.13 -104.63 -0.54 -2.44 16 4 C -0.12 -2.11 9.70 -39.58 -0.38 -2.50 16 5 C -0.12 -2.51 9.67 -39.58 -0.38 -2.90 16 6 C -0.03 -0.58 4.89 -104.62 -0.51 -1.09 16 7 C 0.24 6.04 2.95 -70.01 -0.21 5.83 16 8 H 0.05 1.26 8.00 -51.93 -0.42 0.85 16 9 N -0.85 -20.62 9.02 -6.65 -0.06 -20.68 16 10 C -0.54 -14.78 8.70 -34.44 -0.30 -15.08 16 11 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 12 C 0.07 1.77 5.38 -17.82 -0.10 1.68 16 13 N -0.89 -24.79 11.54 55.43 0.64 -24.15 16 14 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 18 C -0.11 -2.19 9.29 -39.58 -0.37 -2.56 16 19 C -0.12 -2.16 9.70 -39.58 -0.38 -2.54 16 20 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 21 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 23 H 0.06 0.75 8.09 -51.93 -0.42 0.33 16 24 H 0.06 0.75 8.09 -51.93 -0.42 0.33 16 25 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 26 H 0.11 2.22 8.04 -52.49 -0.42 1.80 16 27 H 0.35 9.16 7.08 -39.29 -0.28 8.88 16 28 H 0.31 7.15 7.34 -39.29 -0.29 6.86 16 29 H 0.27 7.02 8.31 -40.82 -0.34 6.69 16 30 H 0.12 2.30 6.66 -52.49 -0.35 1.95 16 31 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 LS Contribution 262.68 15.07 3.96 3.96 Total: -1.00 -27.83 262.68 -7.70 -35.53 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -4.25 Total: 13.28 kcal Atomic # 6 Polarization: -21.05 SS G_CDS: -2.97 Total: -24.02 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: 0.58 Total: -44.83 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -27.83 -7.70 -35.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071496850.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.720 kcal (2) G-P(sol) polarization free energy of solvation -27.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds