Wall clock time and date at job start Mon Mar 30 2020 02:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50693 * 109.47229 * 2 1 4 4 C 1.38233 * 120.00207 * 89.99423 * 3 2 1 5 5 C 1.38234 * 120.00037 * 179.72405 * 4 3 2 6 6 C 1.38234 * 120.00240 * 0.26327 * 5 4 3 7 7 C 1.50701 * 120.00243 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.47140 * 340.00196 * 7 6 5 9 9 N 1.46904 * 109.47222 * 219.99969 * 7 6 5 10 10 C 1.50705 * 109.47028 * 99.99815 * 7 6 5 11 11 H 1.07997 * 119.99635 * 0.02562 * 10 7 6 12 12 C 1.37873 * 119.99942 * 179.97438 * 10 7 6 13 13 N 1.31517 * 120.00133 * 0.02562 * 12 10 7 14 14 Si 1.86794 * 120.00057 * 179.97438 * 12 10 7 15 15 H 1.48506 * 109.46991 * 90.00803 * 14 12 10 16 16 H 1.48504 * 109.47539 * 210.00691 * 14 12 10 17 17 H 1.48495 * 109.47343 * 330.00750 * 14 12 10 18 18 C 1.38238 * 119.99693 * 359.97438 * 6 5 4 19 19 C 1.38234 * 120.00082 * 0.02562 * 18 6 5 20 20 H 1.09004 * 109.47454 * 300.00132 * 1 2 3 21 21 H 1.09006 * 109.47180 * 60.00059 * 1 2 3 22 22 H 1.09004 * 109.47511 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47015 * 240.00030 * 2 1 3 24 24 H 1.09001 * 109.46743 * 119.99783 * 2 1 3 25 25 H 1.08002 * 120.00157 * 0.02562 * 4 3 2 26 26 H 1.07999 * 120.00009 * 180.28389 * 5 4 3 27 27 H 1.00896 * 110.99694 * 176.04499 * 9 7 6 28 28 H 1.00904 * 110.99702 * 299.99720 * 9 7 6 29 29 H 0.96992 * 119.99876 * 179.97438 * 13 12 10 30 30 H 1.08001 * 119.99643 * 179.97438 * 18 6 5 31 31 H 1.07999 * 120.00025 * 179.97438 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2626 2.0725 1.1971 5 6 2.7288 3.3738 1.1971 6 6 2.9596 4.0253 -0.0001 7 6 3.4685 5.4438 -0.0001 8 1 3.2624 5.9038 0.9664 9 7 2.7935 6.2062 -1.0590 10 6 4.9546 5.4444 -0.2500 11 1 5.4781 4.5109 -0.3948 12 6 5.6457 6.6366 -0.2949 13 7 5.0080 7.7733 -0.1191 14 14 7.4879 6.6373 -0.6040 15 1 7.7447 6.7198 -2.0643 16 1 8.1032 7.8067 0.0737 17 1 8.0804 5.3859 -0.0671 18 6 2.7246 3.3753 -1.1972 19 6 2.2584 2.0739 -1.1972 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8932 -0.5138 0.8900 25 1 2.0829 1.5633 2.1325 26 1 2.9131 3.8814 2.1324 27 1 3.0698 7.1763 -1.0383 28 1 2.9693 5.7994 -1.9655 29 1 5.4943 8.6120 -0.1503 30 1 2.9045 3.8845 -2.1325 31 1 2.0744 1.5662 -2.1325 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071496850.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:17 Heat of formation + Delta-G solvation = -15.248612 kcal Electronic energy + Delta-G solvation = -12832.087732 eV Core-core repulsion = 10690.473923 eV Total energy + Delta-G solvation = -2141.613809 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.29831 -36.93976 -34.64378 -32.98853 -31.65593 -29.85425 -27.87648 -25.20411 -23.48598 -22.82551 -21.05080 -18.59249 -17.52962 -16.51524 -16.41247 -15.78558 -15.31229 -14.90913 -14.53769 -14.36072 -13.98422 -13.67887 -13.44562 -13.23737 -12.84119 -12.65232 -12.47783 -12.04725 -11.94942 -11.86879 -11.51636 -11.27912 -10.73769 -9.66055 -9.36423 -9.08982 -8.13412 -6.40855 0.66166 0.68855 1.35260 1.37011 1.47593 2.34580 3.00959 3.08173 4.00653 4.06055 4.28319 4.29324 4.41249 4.62048 4.66459 4.77411 4.82351 4.87466 5.14236 5.15728 5.18230 5.33707 5.45022 5.49287 5.59519 5.73915 5.84523 5.96422 6.16923 6.33470 6.61480 6.89726 7.08823 7.35768 8.80172 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.055494 B = 0.007647 C = 0.007368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.440362 B = 3660.620161 C = 3799.256802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.076 4.076 3 C -0.106 4.106 4 C -0.119 4.119 5 C -0.143 4.143 6 C -0.061 4.061 7 C 0.242 3.758 8 H 0.008 0.992 9 N -0.842 5.842 10 C -0.559 4.559 11 H 0.045 0.955 12 C 0.021 3.979 13 N -0.917 5.917 14 Si 0.961 3.039 15 H -0.272 1.272 16 H -0.279 1.279 17 H -0.274 1.274 18 C -0.122 4.122 19 C -0.122 4.122 20 H 0.049 0.951 21 H 0.049 0.951 22 H 0.074 0.926 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.139 0.861 26 H 0.109 0.891 27 H 0.344 0.656 28 H 0.318 0.682 29 H 0.268 0.732 30 H 0.111 0.889 31 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.300 -12.666 -0.785 13.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.113 4.113 3 C -0.106 4.106 4 C -0.137 4.137 5 C -0.161 4.161 6 C -0.061 4.061 7 C 0.132 3.868 8 H 0.026 0.974 9 N -0.370 5.370 10 C -0.598 4.598 11 H 0.063 0.937 12 C -0.179 4.179 13 N -0.556 5.556 14 Si 0.786 3.214 15 H -0.198 1.198 16 H -0.205 1.205 17 H -0.199 1.199 18 C -0.140 4.140 19 C -0.140 4.140 20 H 0.068 0.932 21 H 0.068 0.932 22 H 0.093 0.907 23 H 0.098 0.902 24 H 0.098 0.902 25 H 0.157 0.843 26 H 0.127 0.873 27 H 0.159 0.841 28 H 0.128 0.872 29 H 0.078 0.922 30 H 0.129 0.871 31 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.970 -12.659 -0.383 14.001 hybrid contribution 2.109 0.950 -0.341 2.339 sum -3.860 -11.709 -0.724 12.350 Atomic orbital electron populations 1.21734 0.94227 1.02357 1.01721 1.20514 0.96514 0.90761 1.03493 1.20118 1.00370 0.97593 0.92510 1.21146 0.99983 0.93870 0.98684 1.21114 1.01566 0.96188 0.97262 1.20282 0.95385 0.96563 0.93896 1.17820 0.90195 0.87147 0.91686 0.97438 1.59501 1.63002 1.08062 1.06483 1.22025 0.94953 0.92623 1.50242 0.93700 1.25776 1.02926 0.95072 0.94144 1.69847 1.37695 0.98008 1.50072 0.85513 0.79823 0.77577 0.78441 1.19779 1.20473 1.19906 1.20958 1.00382 0.95353 0.97342 1.21208 1.00032 0.94084 0.98633 0.93216 0.93190 0.90658 0.90227 0.90240 0.84338 0.87335 0.84133 0.87190 0.92239 0.87083 0.84375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.89 71.98 0.71 -1.97 16 2 C -0.08 -1.60 6.06 29.84 0.18 -1.42 16 3 C -0.11 -3.18 5.13 -19.87 -0.10 -3.28 16 4 C -0.12 -3.92 9.70 22.27 0.22 -3.70 16 5 C -0.14 -5.84 9.67 22.27 0.22 -5.62 16 6 C -0.06 -2.78 4.89 -19.86 -0.10 -2.88 16 7 C 0.24 12.79 2.95 43.42 0.13 12.92 16 8 H 0.01 0.45 8.00 -2.39 -0.02 0.43 16 9 N -0.84 -42.29 9.02 -174.94 -1.58 -43.87 16 10 C -0.56 -31.31 8.70 25.60 0.22 -31.09 16 11 H 0.04 2.55 7.74 -2.91 -0.02 2.53 16 12 C 0.02 1.15 5.38 84.65 0.46 1.61 16 13 N -0.92 -51.86 11.54 21.45 0.25 -51.61 16 14 Si 0.96 43.60 29.54 68.60 2.03 45.63 16 15 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 16 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 17 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 18 C -0.12 -4.93 9.29 22.27 0.21 -4.73 16 19 C -0.12 -4.00 9.70 22.27 0.22 -3.78 16 20 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 21 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 22 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 23 H 0.08 1.49 8.09 -2.39 -0.02 1.47 16 24 H 0.08 1.48 8.09 -2.39 -0.02 1.47 16 25 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 26 H 0.11 4.40 8.04 -2.91 -0.02 4.38 16 27 H 0.34 18.42 7.08 -89.70 -0.63 17.79 16 28 H 0.32 15.03 7.34 -89.69 -0.66 14.37 16 29 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 30 H 0.11 4.46 6.66 -2.91 -0.02 4.44 16 31 H 0.14 3.66 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -60.49 262.68 2.88 -57.62 By element: Atomic # 1 Polarization: 36.35 SS G_CDS: -0.17 Total: 36.18 kcal Atomic # 6 Polarization: -46.29 SS G_CDS: 2.35 Total: -43.94 kcal Atomic # 7 Polarization: -94.15 SS G_CDS: -1.33 Total: -95.48 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -60.49 2.88 -57.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071496850.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.366 kcal (2) G-P(sol) polarization free energy of solvation -60.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds