Wall clock time and date at job start Mon Mar 30 2020 02:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30684 * 1 3 3 Si 1.86796 * 119.99976 * 2 1 4 4 H 1.48503 * 109.47263 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.47034 * 120.00065 * 3 2 1 6 6 H 1.48503 * 109.47268 * 240.00212 * 3 2 1 7 7 C 1.40159 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00435 * 2.82432 * 7 2 1 9 9 C 1.40931 * 120.00062 * 182.82384 * 7 2 1 10 10 N 1.34068 * 120.68124 * 6.95668 * 9 7 2 11 11 C 1.31244 * 120.61591 * 180.23643 * 10 9 7 12 12 N 1.32073 * 122.21356 * 0.08944 * 11 10 9 13 13 C 1.32554 * 121.53390 * 359.84349 * 12 11 10 14 14 C 1.38758 * 119.13471 * 359.60979 * 13 12 11 15 15 N 1.37841 * 123.37644 * 180.48426 * 14 13 12 16 16 C 1.46515 * 113.17250 * 340.19559 * 15 14 13 17 17 C 1.53371 * 108.78354 * 53.02282 * 16 15 14 18 18 C 1.50644 * 118.94021 * 179.65993 * 13 12 11 19 19 H 0.96996 * 119.99809 * 174.84770 * 1 2 3 20 20 H 1.08001 * 118.89367 * 180.02562 * 11 10 9 21 21 H 1.00896 * 110.76012 * 105.58660 * 15 14 13 22 22 H 1.09001 * 109.58723 * 293.23747 * 16 15 14 23 23 H 1.09000 * 109.59139 * 172.81297 * 16 15 14 24 24 H 1.09003 * 109.75189 * 172.42763 * 17 16 15 25 25 H 1.08998 * 109.79266 * 51.70723 * 17 16 15 26 26 H 1.08996 * 109.47390 * 284.55792 * 18 13 12 27 27 H 1.08995 * 109.46900 * 44.55887 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 1.2758 2.7465 0.0006 5 1 3.0946 1.6963 1.2125 6 1 3.0945 1.6964 -1.2125 7 6 2.0076 -1.2138 -0.0005 8 1 1.4686 -2.1486 -0.0470 9 6 3.4156 -1.2147 0.0596 10 7 4.0926 -0.0744 0.2570 11 6 5.4040 -0.0760 0.3081 12 7 6.1127 -1.1816 0.1685 13 6 5.5323 -2.3568 -0.0291 14 6 4.1474 -2.4259 -0.0821 15 7 3.4536 -3.6015 -0.2734 16 6 4.2717 -4.6645 -0.8627 17 6 5.5403 -4.8370 -0.0181 18 6 6.3976 -3.5797 -0.1884 19 1 -0.4850 -0.8366 -0.0754 20 1 5.9211 0.8585 0.4688 21 1 3.0267 -3.9089 0.5875 22 1 4.5457 -4.3922 -1.8820 23 1 3.7083 -5.5976 -0.8705 24 1 6.0952 -5.7103 -0.3611 25 1 5.2713 -4.9601 1.0309 26 1 6.8485 -3.5789 -1.1808 27 1 7.1828 -3.5701 0.5675 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074309140.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:15 Heat of formation + Delta-G solvation = 18.989629 kcal Electronic energy + Delta-G solvation = -13204.562787 eV Core-core repulsion = 10960.893316 eV Total energy + Delta-G solvation = -2243.669470 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.85942 -36.82809 -34.43698 -32.65247 -30.87862 -29.81585 -26.44079 -24.15773 -23.14709 -21.12049 -19.99828 -18.35274 -16.62623 -16.05034 -15.40062 -14.35814 -13.97608 -13.81917 -13.32991 -13.02292 -12.53433 -12.28829 -12.06074 -11.74375 -11.23716 -10.88630 -10.68137 -10.25606 -9.83101 -9.60666 -9.35096 -9.00344 -8.71622 -7.73414 -7.35415 -7.04606 -4.92122 2.33113 2.57873 3.59426 3.68982 3.99377 4.39889 4.61426 4.78874 5.03783 5.15367 5.25796 5.43737 5.57881 5.72379 5.81492 5.97822 6.02899 6.11161 6.23164 6.40470 6.64232 6.82895 7.35223 7.47541 7.71478 7.85702 8.03020 8.28922 8.52848 8.74004 9.67255 9.88593 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.043610 B = 0.013426 C = 0.010470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.903674 B = 2084.969152 C = 2673.584023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.042 3.958 3 Si 1.153 2.847 4 H -0.331 1.331 5 H -0.277 1.277 6 H -0.292 1.292 7 C -0.433 4.433 8 H 0.095 0.905 9 C 0.257 3.743 10 N -0.607 5.607 11 C 0.309 3.691 12 N -0.614 5.614 13 C 0.121 3.879 14 C -0.079 4.079 15 N -0.608 5.608 16 C 0.062 3.938 17 C -0.155 4.155 18 C -0.059 4.059 19 H 0.286 0.714 20 H 0.164 0.836 21 H 0.337 0.663 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.894 -6.091 0.006 8.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.182 4.182 3 Si 0.987 3.013 4 H -0.264 1.264 5 H -0.204 1.204 6 H -0.220 1.220 7 C -0.468 4.468 8 H 0.113 0.887 9 C 0.130 3.870 10 N -0.334 5.334 11 C 0.018 3.982 12 N -0.338 5.338 13 C -0.016 4.016 14 C -0.184 4.184 15 N -0.236 5.236 16 C -0.067 4.067 17 C -0.195 4.195 18 C -0.097 4.097 19 H 0.097 0.903 20 H 0.181 0.819 21 H 0.162 0.838 22 H 0.090 0.910 23 H 0.090 0.910 24 H 0.087 0.913 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.770 -3.652 -0.379 6.839 hybrid contribution 0.228 -2.870 0.452 2.915 sum 5.999 -6.522 0.073 8.862 Atomic orbital electron populations 1.70626 1.08238 1.33105 1.29109 1.27965 0.95289 1.06454 0.88450 0.81869 0.70648 0.69218 0.79562 1.26414 1.20388 1.22029 1.20787 0.90152 0.96657 1.39167 0.88718 1.18820 0.94089 0.85576 0.88528 1.67274 1.09539 1.28683 1.27948 1.23876 0.87338 0.95574 0.91427 1.68006 1.40732 0.98486 1.26587 1.20993 0.90808 0.93524 0.96320 1.19401 0.91638 0.92374 1.15034 1.56315 1.33663 1.02523 1.31110 1.22010 0.92109 0.94099 0.98490 1.22277 0.98782 0.97623 1.00821 1.20231 0.96841 0.90552 1.02079 0.90278 0.81912 0.83836 0.91037 0.90960 0.91292 0.92040 0.90994 0.90706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.94 13.65 55.56 0.76 -20.18 15 2 C 0.04 1.12 5.52 -17.32 -0.10 1.02 15 3 Si 1.15 28.11 25.60 -169.99 -4.35 23.76 15 4 H -0.33 -7.94 7.11 56.52 0.40 -7.54 15 5 H -0.28 -6.71 6.67 56.52 0.38 -6.33 15 6 H -0.29 -7.24 7.11 56.52 0.40 -6.84 15 7 C -0.43 -11.55 9.35 -37.84 -0.35 -11.90 15 8 H 0.09 2.51 7.46 -52.49 -0.39 2.12 15 9 C 0.26 6.73 6.42 -84.34 -0.54 6.19 15 10 N -0.61 -15.64 4.75 -12.36 -0.06 -15.70 15 11 C 0.31 7.22 12.26 -92.38 -1.13 6.09 15 12 N -0.61 -14.24 10.31 -10.79 -0.11 -14.35 15 13 C 0.12 2.68 6.65 -82.12 -0.55 2.13 15 14 C -0.08 -1.84 6.15 -83.44 -0.51 -2.35 15 15 N -0.61 -12.20 5.48 -58.03 -0.32 -12.51 15 16 C 0.06 0.99 6.60 -3.84 -0.03 0.96 15 17 C -0.16 -2.24 6.19 -26.47 -0.16 -2.40 15 18 C -0.06 -1.02 6.11 -27.84 -0.17 -1.19 15 19 H 0.29 7.22 8.72 -40.82 -0.36 6.87 15 20 H 0.16 3.21 8.06 -52.49 -0.42 2.79 15 21 H 0.34 6.36 8.82 -39.29 -0.35 6.02 15 22 H 0.07 1.18 8.11 -51.93 -0.42 0.76 15 23 H 0.07 0.95 8.14 -51.93 -0.42 0.53 15 24 H 0.07 0.80 8.14 -51.93 -0.42 0.38 15 25 H 0.06 0.89 8.14 -51.93 -0.42 0.47 15 26 H 0.07 1.17 8.14 -51.93 -0.42 0.75 15 27 H 0.07 1.23 8.14 -51.93 -0.42 0.80 15 LS Contribution 227.80 15.07 3.43 3.43 Total: -1.00 -29.16 227.80 -7.06 -36.22 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -2.87 Total: 0.78 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -3.54 Total: -1.45 kcal Atomic # 7 Polarization: -63.01 SS G_CDS: 0.27 Total: -62.74 kcal Atomic # 14 Polarization: 28.11 SS G_CDS: -4.35 Total: 23.76 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -29.16 -7.06 -36.22 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074309140.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.211 kcal (2) G-P(sol) polarization free energy of solvation -29.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds