Wall clock time and date at job start Mon Mar 30 2020 02:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30684 * 1 3 3 Si 1.86796 * 119.99976 * 2 1 4 4 H 1.48503 * 109.47263 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.47034 * 120.00065 * 3 2 1 6 6 H 1.48503 * 109.47268 * 240.00212 * 3 2 1 7 7 C 1.40159 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00435 * 2.82432 * 7 2 1 9 9 C 1.40931 * 120.00062 * 182.82384 * 7 2 1 10 10 N 1.34068 * 120.68124 * 6.95668 * 9 7 2 11 11 C 1.31244 * 120.61591 * 180.23643 * 10 9 7 12 12 N 1.32073 * 122.21356 * 0.08944 * 11 10 9 13 13 C 1.32554 * 121.53390 * 359.84349 * 12 11 10 14 14 C 1.38758 * 119.13471 * 359.60979 * 13 12 11 15 15 N 1.37841 * 123.37644 * 180.48426 * 14 13 12 16 16 C 1.46515 * 113.17250 * 340.19559 * 15 14 13 17 17 C 1.53371 * 108.78354 * 53.02282 * 16 15 14 18 18 C 1.50644 * 118.94021 * 179.65993 * 13 12 11 19 19 H 0.96996 * 119.99809 * 174.84770 * 1 2 3 20 20 H 1.08001 * 118.89367 * 180.02562 * 11 10 9 21 21 H 1.00896 * 110.76012 * 105.58660 * 15 14 13 22 22 H 1.09001 * 109.58723 * 293.23747 * 16 15 14 23 23 H 1.09000 * 109.59139 * 172.81297 * 16 15 14 24 24 H 1.09003 * 109.75189 * 172.42763 * 17 16 15 25 25 H 1.08998 * 109.79266 * 51.70723 * 17 16 15 26 26 H 1.08996 * 109.47390 * 284.55792 * 18 13 12 27 27 H 1.08995 * 109.46900 * 44.55887 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 1.2758 2.7465 0.0006 5 1 3.0946 1.6963 1.2125 6 1 3.0945 1.6964 -1.2125 7 6 2.0076 -1.2138 -0.0005 8 1 1.4686 -2.1486 -0.0470 9 6 3.4156 -1.2147 0.0596 10 7 4.0926 -0.0744 0.2570 11 6 5.4040 -0.0760 0.3081 12 7 6.1127 -1.1816 0.1685 13 6 5.5323 -2.3568 -0.0291 14 6 4.1474 -2.4259 -0.0821 15 7 3.4536 -3.6015 -0.2734 16 6 4.2717 -4.6645 -0.8627 17 6 5.5403 -4.8370 -0.0181 18 6 6.3976 -3.5797 -0.1884 19 1 -0.4850 -0.8366 -0.0754 20 1 5.9211 0.8585 0.4688 21 1 3.0267 -3.9089 0.5875 22 1 4.5457 -4.3922 -1.8820 23 1 3.7083 -5.5976 -0.8705 24 1 6.0952 -5.7103 -0.3611 25 1 5.2713 -4.9601 1.0309 26 1 6.8485 -3.5789 -1.1808 27 1 7.1828 -3.5701 0.5675 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074309140.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:15 Heat of formation + Delta-G solvation = 0.252403 kcal Electronic energy + Delta-G solvation = -13205.375294 eV Core-core repulsion = 10960.893316 eV Total energy + Delta-G solvation = -2244.481977 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.60283 -38.39608 -36.33481 -34.44619 -32.44313 -31.51940 -28.27241 -25.71927 -24.74683 -22.92157 -21.53969 -20.23687 -18.37720 -17.63953 -17.20409 -15.83420 -15.71369 -15.46444 -15.06566 -14.59145 -14.27773 -13.89861 -13.71036 -13.36846 -12.94408 -12.53718 -12.01865 -11.85785 -11.75229 -11.41905 -11.22417 -10.86320 -10.46351 -9.68373 -9.24836 -8.80155 -6.87904 0.53646 0.64209 1.62126 1.74540 2.05128 2.46300 2.67423 3.31199 3.49915 3.55243 3.83617 3.97306 4.03201 4.30344 4.33058 4.59617 4.71783 4.83600 4.89132 5.03361 5.15332 5.24917 5.35908 5.64829 5.88005 6.08429 6.34793 6.46214 6.64683 6.89887 7.78293 7.90342 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.043610 B = 0.013426 C = 0.010470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.903674 B = 2084.969152 C = 2673.584023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.017 3.983 3 Si 1.185 2.815 4 H -0.327 1.327 5 H -0.276 1.276 6 H -0.300 1.300 7 C -0.461 4.461 8 H 0.085 0.915 9 C 0.238 3.762 10 N -0.626 5.626 11 C 0.293 3.707 12 N -0.611 5.611 13 C 0.110 3.890 14 C -0.083 4.083 15 N -0.623 5.623 16 C 0.059 3.941 17 C -0.143 4.143 18 C -0.058 4.058 19 H 0.286 0.714 20 H 0.196 0.804 21 H 0.342 0.658 22 H 0.064 0.936 23 H 0.104 0.896 24 H 0.109 0.891 25 H 0.061 0.939 26 H 0.084 0.916 27 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.693 -7.489 -0.043 10.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.202 4.202 3 Si 1.017 2.983 4 H -0.260 1.260 5 H -0.204 1.204 6 H -0.229 1.229 7 C -0.496 4.496 8 H 0.103 0.897 9 C 0.109 3.891 10 N -0.354 5.354 11 C 0.003 3.997 12 N -0.334 5.334 13 C -0.028 4.028 14 C -0.189 4.189 15 N -0.251 5.251 16 C -0.069 4.069 17 C -0.182 4.182 18 C -0.096 4.096 19 H 0.097 0.903 20 H 0.212 0.788 21 H 0.168 0.832 22 H 0.082 0.918 23 H 0.122 0.878 24 H 0.127 0.873 25 H 0.080 0.920 26 H 0.103 0.897 27 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.580 -5.075 -0.426 9.132 hybrid contribution -0.171 -2.540 0.445 2.585 sum 7.409 -7.615 0.020 10.625 Atomic orbital electron populations 1.70634 1.08388 1.33140 1.31113 1.28535 0.95592 1.07866 0.88239 0.81427 0.69907 0.67944 0.78976 1.26029 1.20377 1.22899 1.20721 0.90748 0.96346 1.41735 0.89694 1.19150 0.94331 0.87146 0.88501 1.67248 1.10673 1.29028 1.28431 1.24549 0.86916 0.97104 0.91152 1.68136 1.40794 0.98926 1.25569 1.21826 0.91245 0.94881 0.94869 1.19571 0.92289 0.92827 1.14172 1.56226 1.34575 1.02889 1.31451 1.22184 0.92946 0.93873 0.97918 1.22223 0.97729 0.97626 1.00671 1.20389 0.96723 0.89368 1.03119 0.90318 0.78768 0.83219 0.91781 0.87811 0.87286 0.91981 0.89745 0.89533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -43.80 13.65 21.86 0.30 -43.50 15 2 C 0.02 0.95 5.52 85.33 0.47 1.42 15 3 Si 1.18 57.56 25.60 68.60 1.76 59.31 15 4 H -0.33 -15.46 7.11 99.48 0.71 -14.75 15 5 H -0.28 -13.26 6.67 99.48 0.66 -12.59 15 6 H -0.30 -14.82 7.11 99.48 0.71 -14.11 15 7 C -0.46 -25.02 9.35 23.40 0.22 -24.80 15 8 H 0.08 4.63 7.46 -2.91 -0.02 4.61 15 9 C 0.24 12.44 6.42 40.45 0.26 12.70 15 10 N -0.63 -31.95 4.75 -193.01 -0.92 -32.86 15 11 C 0.29 13.28 12.26 180.96 2.22 15.50 15 12 N -0.61 -27.10 10.31 -188.06 -1.94 -29.04 15 13 C 0.11 4.64 6.65 42.56 0.28 4.92 15 14 C -0.08 -3.80 6.15 39.31 0.24 -3.56 15 15 N -0.62 -24.07 5.48 -337.52 -1.85 -25.92 15 16 C 0.06 1.68 6.60 86.50 0.57 2.25 15 17 C -0.14 -3.50 6.19 30.76 0.19 -3.31 15 18 C -0.06 -1.79 6.11 29.88 0.18 -1.60 15 19 H 0.29 14.84 8.72 -92.71 -0.81 14.03 15 20 H 0.20 7.27 8.06 -2.91 -0.02 7.25 15 21 H 0.34 12.56 8.82 -89.70 -0.79 11.76 15 22 H 0.06 1.93 8.11 -2.39 -0.02 1.91 15 23 H 0.10 2.31 8.14 -2.39 -0.02 2.29 15 24 H 0.11 1.88 8.14 -2.39 -0.02 1.86 15 25 H 0.06 1.55 8.14 -2.39 -0.02 1.53 15 26 H 0.08 2.42 8.14 -2.39 -0.02 2.40 15 27 H 0.09 2.48 8.14 -2.39 -0.02 2.47 15 Total: -1.00 -62.15 227.80 2.30 -59.85 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: 0.32 Total: 8.65 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: 4.64 Total: 3.52 kcal Atomic # 7 Polarization: -126.92 SS G_CDS: -4.41 Total: -131.32 kcal Atomic # 14 Polarization: 57.56 SS G_CDS: 1.76 Total: 59.31 kcal Total: -62.15 2.30 -59.85 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074309140.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.099 kcal (2) G-P(sol) polarization free energy of solvation -62.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds