Wall clock time and date at job start Mon Mar 30 2020 02:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48497 * 109.47154 * 269.99847 * 3 2 1 5 5 H 1.48493 * 109.47010 * 30.00371 * 3 2 1 6 6 H 1.48502 * 109.46736 * 150.00068 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.32016 * 60.08805 * 9 7 2 11 11 N 1.46735 * 109.31942 * 300.63239 * 9 7 2 12 12 C 1.47143 * 110.35406 * 187.47899 * 11 9 7 13 13 C 1.52967 * 108.64227 * 71.15200 * 12 11 9 14 14 C 1.50537 * 109.83351 * 309.64448 * 13 12 11 15 15 N 1.32651 * 119.28736 * 196.69819 * 14 13 12 16 16 C 1.31711 * 120.85017 * 180.37243 * 15 14 13 17 17 N 1.31804 * 121.73449 * 359.97438 * 16 15 14 18 18 C 1.32268 * 120.74474 * 359.92601 * 17 16 15 19 19 C 1.37953 * 121.65147 * 16.92919 * 14 13 12 20 20 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 21 21 H 1.00892 * 110.99896 * 310.98148 * 11 9 7 22 22 H 1.08993 * 109.61166 * 311.40219 * 12 11 9 23 23 H 1.09006 * 109.60572 * 190.89722 * 12 11 9 24 24 H 1.08998 * 109.41450 * 189.52720 * 13 12 11 25 25 H 1.09006 * 109.40918 * 69.74826 * 13 12 11 26 26 H 1.08001 * 119.12928 * 180.02562 * 16 15 14 27 27 H 1.08000 * 120.45175 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 1 0.6261 -2.5549 -0.8918 11 7 0.3976 -2.5671 1.1913 12 6 -0.2120 -3.9012 1.3089 13 6 0.8758 -4.9031 1.6995 14 6 2.0570 -4.7600 0.7773 15 7 2.9571 -5.7328 0.7199 16 6 4.0061 -5.6365 -0.0707 17 7 4.2053 -4.5797 -0.8326 18 6 3.3485 -3.5721 -0.8287 19 6 2.2307 -3.6392 -0.0080 20 1 -0.4851 0.8401 0.0004 21 1 0.9188 -2.3330 2.0229 22 1 -0.6486 -4.1895 0.3528 23 1 -0.9857 -3.8833 2.0766 24 1 0.4791 -5.9157 1.6257 25 1 1.1921 -4.7130 2.7252 26 1 4.7214 -6.4453 -0.0958 27 1 3.5161 -2.7085 -1.4553 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074309151.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:29 Heat of formation + Delta-G solvation = 46.416011 kcal Electronic energy + Delta-G solvation = -13149.133086 eV Core-core repulsion = 10906.652913 eV Total energy + Delta-G solvation = -2242.480173 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.63935 -36.79602 -33.83867 -32.33258 -30.91661 -29.63448 -25.71744 -24.06945 -23.63411 -21.51553 -20.07120 -17.29382 -16.47735 -16.15497 -14.95648 -14.54003 -14.14361 -13.81412 -13.42950 -13.00160 -12.65027 -12.21958 -11.78807 -11.65634 -11.07833 -10.95387 -10.61775 -10.52008 -9.96277 -9.79913 -9.48589 -8.73814 -8.55377 -8.31439 -7.15145 -6.04982 -4.22560 1.59316 1.65588 3.25844 3.33820 3.36443 4.30904 4.40096 4.50896 4.77948 5.10365 5.18241 5.49351 5.57439 5.69455 5.80255 5.86096 6.14491 6.25584 6.32156 6.47555 6.63813 7.07977 7.18714 7.59503 7.72273 7.93262 8.33574 8.64798 8.70150 8.89127 9.47750 10.98588 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.037872 B = 0.012346 C = 0.009771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.146123 B = 2267.479835 C = 2864.897316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.086 3.914 3 Si 0.888 3.112 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.257 3.743 10 H 0.060 0.940 11 N -0.641 5.641 12 C 0.051 3.949 13 C -0.106 4.106 14 C 0.151 3.849 15 N -0.529 5.529 16 C 0.258 3.742 17 N -0.532 5.532 18 C 0.154 3.846 19 C -0.170 4.170 20 H 0.260 0.740 21 H 0.329 0.671 22 H 0.065 0.935 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.183 0.817 27 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.807 -6.306 1.380 6.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.123 4.123 3 Si 0.715 3.285 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.584 4.584 8 H 0.077 0.923 9 C 0.148 3.852 10 H 0.078 0.922 11 N -0.268 5.268 12 C -0.080 4.080 13 C -0.146 4.146 14 C 0.007 3.993 15 N -0.244 5.244 16 C -0.031 4.031 17 N -0.246 5.246 18 C -0.012 4.012 19 C -0.176 4.176 20 H 0.070 0.930 21 H 0.147 0.853 22 H 0.083 0.917 23 H 0.089 0.911 24 H 0.097 0.903 25 H 0.098 0.902 26 H 0.200 0.800 27 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 1.699 -6.638 1.059 6.933 hybrid contribution 0.803 0.898 0.344 1.253 sum 2.501 -5.740 1.403 6.416 Atomic orbital electron populations 1.70101 1.05688 1.26255 1.45444 1.24960 0.94711 0.98802 0.93791 0.86685 0.79986 0.83613 0.78225 1.20511 1.21106 1.19928 1.20925 0.92340 0.89262 1.55839 0.92262 1.18138 0.87106 0.88561 0.91435 0.92243 1.61283 1.37639 1.21846 1.05990 1.22167 0.95398 0.89336 1.01129 1.21222 0.93650 1.02243 0.97461 1.21291 0.94393 0.89096 0.94526 1.68204 1.03958 1.30538 1.21666 1.24567 0.93677 0.95331 0.89476 1.68345 1.31396 1.02295 1.22595 1.23372 0.88190 0.95170 0.94474 1.22874 0.99890 0.98768 0.96056 0.93031 0.85333 0.91651 0.91054 0.90327 0.90209 0.80013 0.80954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.80 12.74 55.43 0.71 -22.10 15 2 C 0.09 2.22 5.38 -17.82 -0.10 2.12 15 3 Si 0.89 20.07 29.54 -169.99 -5.02 15.05 15 4 H -0.28 -6.28 7.11 56.52 0.40 -5.87 15 5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 15 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 15 7 C -0.55 -13.77 7.91 -34.44 -0.27 -14.04 15 8 H 0.06 1.49 6.77 -52.49 -0.36 1.13 15 9 C 0.26 5.99 2.42 -70.29 -0.17 5.82 15 10 H 0.06 1.54 8.14 -51.93 -0.42 1.11 15 11 N -0.64 -14.08 5.91 -109.34 -0.65 -14.73 15 12 C 0.05 0.91 6.61 -3.71 -0.02 0.88 15 13 C -0.11 -1.77 6.10 -27.98 -0.17 -1.94 15 14 C 0.15 2.97 6.67 -82.42 -0.55 2.42 15 15 N -0.53 -10.04 10.35 -10.96 -0.11 -10.16 15 16 C 0.26 4.59 12.28 -92.22 -1.13 3.45 15 17 N -0.53 -10.26 10.44 -14.55 -0.15 -10.41 15 18 C 0.15 3.14 10.03 -17.14 -0.17 2.96 15 19 C -0.17 -3.59 5.45 -104.69 -0.57 -4.16 15 20 H 0.26 6.76 8.31 -40.82 -0.34 6.42 15 21 H 0.33 7.25 8.55 -39.30 -0.34 6.92 15 22 H 0.06 1.19 8.05 -51.93 -0.42 0.78 15 23 H 0.07 1.13 8.14 -51.93 -0.42 0.71 15 24 H 0.08 1.19 8.14 -51.93 -0.42 0.77 15 25 H 0.08 1.27 8.14 -51.93 -0.42 0.85 15 26 H 0.18 2.50 8.06 -52.49 -0.42 2.08 15 27 H 0.17 3.38 7.22 -52.49 -0.38 3.00 15 LS Contribution 232.68 15.07 3.51 3.51 Total: -1.00 -27.71 232.68 -7.62 -35.33 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -2.74 Total: 5.99 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -3.16 Total: -2.48 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: -0.21 Total: -57.40 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -27.71 -7.62 -35.33 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074309151.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.744 kcal (2) G-P(sol) polarization free energy of solvation -27.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds