Wall clock time and date at job start Mon Mar 30 2020 02:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48497 * 109.47154 * 269.99847 * 3 2 1 5 5 H 1.48493 * 109.47010 * 30.00371 * 3 2 1 6 6 H 1.48502 * 109.46736 * 150.00068 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.32016 * 60.08805 * 9 7 2 11 11 N 1.46735 * 109.31942 * 300.63239 * 9 7 2 12 12 C 1.47143 * 110.35406 * 187.47899 * 11 9 7 13 13 C 1.52967 * 108.64227 * 71.15200 * 12 11 9 14 14 C 1.50537 * 109.83351 * 309.64448 * 13 12 11 15 15 N 1.32651 * 119.28736 * 196.69819 * 14 13 12 16 16 C 1.31711 * 120.85017 * 180.37243 * 15 14 13 17 17 N 1.31804 * 121.73449 * 359.97438 * 16 15 14 18 18 C 1.32268 * 120.74474 * 359.92601 * 17 16 15 19 19 C 1.37953 * 121.65147 * 16.92919 * 14 13 12 20 20 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 21 21 H 1.00892 * 110.99896 * 310.98148 * 11 9 7 22 22 H 1.08993 * 109.61166 * 311.40219 * 12 11 9 23 23 H 1.09006 * 109.60572 * 190.89722 * 12 11 9 24 24 H 1.08998 * 109.41450 * 189.52720 * 13 12 11 25 25 H 1.09006 * 109.40918 * 69.74826 * 13 12 11 26 26 H 1.08001 * 119.12928 * 180.02562 * 16 15 14 27 27 H 1.08000 * 120.45175 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 1 0.6261 -2.5549 -0.8918 11 7 0.3976 -2.5671 1.1913 12 6 -0.2120 -3.9012 1.3089 13 6 0.8758 -4.9031 1.6995 14 6 2.0570 -4.7600 0.7773 15 7 2.9571 -5.7328 0.7199 16 6 4.0061 -5.6365 -0.0707 17 7 4.2053 -4.5797 -0.8326 18 6 3.3485 -3.5721 -0.8287 19 6 2.2307 -3.6392 -0.0080 20 1 -0.4851 0.8401 0.0004 21 1 0.9188 -2.3330 2.0229 22 1 -0.6486 -4.1895 0.3528 23 1 -0.9857 -3.8833 2.0766 24 1 0.4791 -5.9157 1.6257 25 1 1.1921 -4.7130 2.7252 26 1 4.7214 -6.4453 -0.0958 27 1 3.5161 -2.7085 -1.4553 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074309151.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:29 Heat of formation + Delta-G solvation = 27.976015 kcal Electronic energy + Delta-G solvation = -13149.932704 eV Core-core repulsion = 10906.652913 eV Total energy + Delta-G solvation = -2243.279791 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.15842 -38.38872 -35.46781 -34.12657 -32.48815 -31.24730 -27.51631 -25.68495 -25.15711 -23.17753 -21.63937 -18.99756 -18.02765 -17.80590 -16.71176 -16.18234 -15.72085 -15.42118 -15.00138 -14.54528 -14.27810 -13.74018 -13.44358 -13.26139 -12.82281 -12.73929 -12.28165 -12.09515 -11.68994 -11.32707 -11.28469 -10.62176 -10.13588 -9.99071 -8.80307 -8.01796 -6.23993 0.07552 0.10537 1.45921 1.48952 1.56546 2.46011 2.85317 3.08421 3.21858 3.37319 3.65737 3.92992 4.04347 4.22181 4.31599 4.39749 4.62948 4.87739 4.92185 5.02286 5.13962 5.34277 5.56566 5.72986 6.05171 6.07978 6.53321 6.98734 7.00717 7.15173 7.48956 9.01538 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.037872 B = 0.012346 C = 0.009771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.146123 B = 2267.479835 C = 2864.897316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.043 3.957 3 Si 0.948 3.052 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.552 4.552 8 H 0.055 0.945 9 C 0.266 3.734 10 H 0.023 0.977 11 N -0.659 5.659 12 C 0.055 3.945 13 C -0.097 4.097 14 C 0.152 3.848 15 N -0.533 5.533 16 C 0.264 3.736 17 N -0.540 5.540 18 C 0.149 3.851 19 C -0.195 4.195 20 H 0.259 0.741 21 H 0.327 0.673 22 H 0.056 0.944 23 H 0.096 0.904 24 H 0.102 0.898 25 H 0.094 0.906 26 H 0.226 0.774 27 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.548 -7.365 2.149 8.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.162 4.162 3 Si 0.774 3.226 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.591 4.591 8 H 0.073 0.927 9 C 0.156 3.844 10 H 0.041 0.959 11 N -0.286 5.286 12 C -0.076 4.076 13 C -0.137 4.137 14 C 0.007 3.993 15 N -0.247 5.247 16 C -0.024 4.024 17 N -0.254 5.254 18 C -0.017 4.017 19 C -0.201 4.201 20 H 0.068 0.932 21 H 0.144 0.856 22 H 0.075 0.925 23 H 0.114 0.886 24 H 0.121 0.879 25 H 0.113 0.887 26 H 0.242 0.758 27 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 2.450 -7.706 1.823 8.288 hybrid contribution 0.606 1.120 0.092 1.276 sum 3.055 -6.586 1.914 7.508 Atomic orbital electron populations 1.70212 1.06907 1.26761 1.46895 1.25601 0.95360 1.01603 0.93670 0.85746 0.78669 0.80092 0.78124 1.20185 1.21091 1.19841 1.21187 0.92328 0.90499 1.55042 0.92682 1.17731 0.87065 0.88860 0.90721 0.95906 1.61084 1.37463 1.24784 1.05248 1.22199 0.96066 0.87713 1.01594 1.21202 0.92104 1.02993 0.97367 1.21692 0.95159 0.88425 0.94019 1.68346 1.04246 1.30028 1.22114 1.25465 0.93674 0.95505 0.87757 1.68422 1.31116 1.02542 1.23302 1.23371 0.88374 0.95640 0.94322 1.22668 1.00232 0.99159 0.98060 0.93210 0.85578 0.92530 0.88617 0.87932 0.88742 0.75840 0.81316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -48.05 12.74 21.45 0.27 -47.78 15 2 C 0.04 2.23 5.38 84.65 0.46 2.69 15 3 Si 0.95 41.53 29.54 68.60 2.03 43.56 15 4 H -0.28 -11.87 7.11 99.48 0.71 -11.17 15 5 H -0.29 -12.41 7.11 99.48 0.71 -11.70 15 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 15 7 C -0.55 -28.30 7.91 25.60 0.20 -28.10 15 8 H 0.06 2.80 6.77 -2.91 -0.02 2.78 15 9 C 0.27 12.64 2.42 43.34 0.10 12.74 15 10 H 0.02 1.25 8.14 -2.39 -0.02 1.23 15 11 N -0.66 -28.98 5.91 -499.84 -2.95 -31.93 15 12 C 0.05 1.88 6.61 86.25 0.57 2.45 15 13 C -0.10 -3.01 6.10 29.79 0.18 -2.83 15 14 C 0.15 5.68 6.67 42.32 0.28 5.97 15 15 N -0.53 -18.77 10.35 -188.57 -1.95 -20.72 15 16 C 0.26 8.62 12.28 180.91 2.22 10.85 15 17 N -0.54 -19.93 10.44 -199.95 -2.09 -22.02 15 18 C 0.15 6.02 10.03 84.77 0.85 6.87 15 19 C -0.20 -8.20 5.45 -19.91 -0.11 -8.31 15 20 H 0.26 13.65 8.31 -92.71 -0.77 12.88 15 21 H 0.33 14.35 8.55 -89.70 -0.77 13.59 15 22 H 0.06 2.03 8.05 -2.39 -0.02 2.01 15 23 H 0.10 2.83 8.14 -2.38 -0.02 2.81 15 24 H 0.10 2.74 8.14 -2.39 -0.02 2.72 15 25 H 0.09 2.71 8.14 -2.38 -0.02 2.69 15 26 H 0.23 5.20 8.06 -2.91 -0.02 5.18 15 27 H 0.17 6.76 7.22 -2.91 -0.02 6.74 15 Total: -1.00 -58.41 232.68 0.49 -57.92 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: 0.42 Total: 18.63 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: 4.76 Total: 2.33 kcal Atomic # 7 Polarization: -115.73 SS G_CDS: -6.72 Total: -122.44 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -58.41 0.49 -57.92 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074309151.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.899 kcal (2) G-P(sol) polarization free energy of solvation -58.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds