Wall clock time and date at job start Mon Mar 30 2020 02:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34500 * 125.38567 * 2 1 4 4 C 1.46555 * 107.42584 * 179.85985 * 3 2 1 5 5 N 1.31644 * 144.46310 * 179.97438 * 4 3 2 6 6 C 1.35078 * 109.18169 * 180.42305 * 5 4 3 7 7 C 1.41186 * 126.22090 * 180.02562 * 6 5 4 8 8 H 1.08000 * 120.00070 * 180.02562 * 7 6 5 9 9 C 1.39507 * 120.00036 * 0.02614 * 7 6 5 10 10 N 1.31132 * 119.99905 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99907 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46666 * 90.00267 * 11 9 7 13 13 H 1.48498 * 109.47095 * 209.99852 * 11 9 7 14 14 H 1.48498 * 109.47172 * 330.00111 * 11 9 7 15 15 C 1.39409 * 107.55760 * 359.97438 * 6 5 4 16 16 N 1.35940 * 106.65161 * 0.02562 * 15 6 5 17 17 N 1.37233 * 125.38414 * 180.30671 * 2 1 3 18 18 C 1.46492 * 125.39659 * 359.97438 * 17 2 1 19 19 H 1.09002 * 109.47152 * 269.69512 * 1 2 3 20 20 H 1.09001 * 109.46980 * 149.69612 * 1 2 3 21 21 H 1.09004 * 109.47113 * 29.69593 * 1 2 3 22 22 H 1.08004 * 126.28935 * 359.95898 * 3 2 1 23 23 H 0.97002 * 120.00173 * 180.02562 * 10 9 7 24 24 H 1.08003 * 126.67598 * 180.02562 * 15 6 5 25 25 H 1.08999 * 109.47548 * 89.97785 * 18 17 2 26 26 H 1.09003 * 109.47053 * 209.97757 * 18 17 2 27 27 H 1.09004 * 109.47316 * 329.97717 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2859 1.0965 0.0000 4 6 3.6800 0.6446 0.0034 5 7 4.9350 1.0422 0.0050 6 6 5.7434 -0.0400 -0.0009 7 6 7.1552 -0.0267 -0.0009 8 1 7.7039 -0.9569 -0.0064 9 6 7.8413 1.1879 0.0063 10 7 7.1750 2.3173 0.0135 11 14 9.7093 1.2054 0.0071 12 1 10.2047 1.2181 -1.3928 13 1 10.1926 2.4185 0.7142 14 1 10.2154 -0.0064 0.7004 15 6 4.9302 -1.1723 -0.0059 16 7 3.6451 -0.7290 -0.0034 17 7 2.3017 -1.1188 -0.0060 18 6 1.8195 -2.5021 -0.0129 19 1 -0.3633 -0.0055 1.0277 20 1 -0.3633 -0.8873 -0.5186 21 1 -0.3633 0.8927 -0.5091 22 1 1.9463 2.1218 -0.0006 23 1 7.6521 3.1619 0.0181 24 1 5.2575 -2.2016 -0.0108 25 1 1.6991 -2.8399 -1.0422 26 1 2.5406 -3.1408 0.4971 27 1 0.8598 -2.5549 0.5014 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074309153.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:13 Heat of formation + Delta-G solvation = 145.940975 kcal Electronic energy + Delta-G solvation = -12819.164533 eV Core-core repulsion = 10581.000086 eV Total energy + Delta-G solvation = -2238.164447 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.01076 -37.11033 -33.06859 -32.12631 -30.61228 -28.70651 -27.24999 -25.21897 -23.82016 -19.98115 -19.48865 -19.00492 -16.26520 -15.95802 -15.34326 -14.87513 -14.29469 -13.19373 -13.09314 -13.04698 -12.85598 -12.56593 -12.32704 -11.83504 -11.55498 -11.09530 -10.87630 -10.40996 -10.28174 -9.89669 -9.09976 -8.83768 -7.91270 -7.18469 -6.32153 -6.14568 -3.99740 2.23882 2.52702 3.19732 3.29925 3.33772 3.78844 4.25933 4.63040 4.80916 4.94614 5.24138 5.28736 5.31689 5.49557 5.60275 5.82609 5.88594 5.91699 6.24818 6.45934 6.91064 7.27942 7.33141 7.55172 7.92357 8.05065 8.51373 8.92504 9.20946 9.33783 10.11375 10.78354 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.074494 B = 0.008469 C = 0.007647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 375.778794 B = 3305.395975 C = 3660.727210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.075 3.925 3 C -0.179 4.179 4 C 0.182 3.818 5 N -0.453 5.453 6 C 0.234 3.766 7 C -0.452 4.452 8 H 0.078 0.922 9 C 0.075 3.925 10 N -0.766 5.766 11 Si 0.904 3.096 12 H -0.274 1.274 13 H -0.281 1.281 14 H -0.266 1.266 15 C -0.222 4.222 16 N -0.281 5.281 17 N -0.404 5.404 18 C 0.109 3.891 19 H 0.073 0.927 20 H 0.064 0.936 21 H 0.085 0.915 22 H 0.150 0.850 23 H 0.267 0.733 24 H 0.143 0.857 25 H 0.057 0.943 26 H 0.073 0.927 27 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.838 -5.347 0.067 12.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.033 4.033 3 C -0.209 4.209 4 C -0.068 4.068 5 N -0.180 5.180 6 C 0.105 3.895 7 C -0.487 4.487 8 H 0.096 0.904 9 C -0.144 4.144 10 N -0.392 5.392 11 Si 0.730 3.270 12 H -0.199 1.199 13 H -0.206 1.206 14 H -0.191 1.191 15 C -0.350 4.350 16 N -0.057 5.057 17 N -0.199 5.199 18 C -0.033 4.033 19 H 0.092 0.908 20 H 0.083 0.917 21 H 0.104 0.896 22 H 0.167 0.833 23 H 0.078 0.922 24 H 0.160 0.840 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.604 -4.867 0.075 11.667 hybrid contribution 0.665 -1.081 -0.019 1.270 sum -9.938 -5.948 0.057 11.582 Atomic orbital electron populations 1.20320 0.87045 1.03299 1.02665 1.20158 0.92453 0.84440 1.06248 1.20596 0.87161 0.97531 1.15652 1.23220 0.95051 0.79045 1.09458 1.71174 0.94345 1.27457 1.25071 1.18214 0.92736 0.84200 0.94335 1.18370 0.88010 0.93268 1.49081 0.90402 1.25752 0.99580 0.95350 0.93678 1.70179 1.35967 0.97638 1.35408 0.86408 0.83685 0.78267 0.78671 1.19934 1.20600 1.19065 1.22001 0.76910 0.99404 1.36714 1.45568 0.94960 1.09079 1.56128 1.45767 0.93305 1.04803 1.76048 1.21688 0.99963 0.79659 1.01968 0.90832 0.91733 0.89646 0.83257 0.92230 0.83978 0.92491 0.90865 0.89811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 9.84 36.01 0.35 -0.45 15 2 C 0.08 1.32 6.92 -81.49 -0.56 0.75 15 3 C -0.18 -3.77 10.95 -37.55 -0.41 -4.18 15 4 C 0.18 4.94 8.76 -154.17 -1.35 3.59 15 5 N -0.45 -14.03 9.50 -8.93 -0.08 -14.11 15 6 C 0.23 7.11 6.66 -84.88 -0.57 6.54 15 7 C -0.45 -13.34 9.36 -37.99 -0.36 -13.70 15 8 H 0.08 2.14 7.84 -52.49 -0.41 1.73 15 9 C 0.08 2.14 5.49 -17.38 -0.10 2.04 15 10 N -0.77 -22.90 11.93 55.53 0.66 -22.24 15 11 Si 0.90 20.57 29.56 -169.99 -5.02 15.55 15 12 H -0.27 -6.11 7.11 56.52 0.40 -5.71 15 13 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 14 H -0.27 -5.90 7.11 56.52 0.40 -5.49 15 15 C -0.22 -6.02 12.10 -15.30 -0.19 -6.20 15 16 N -0.28 -7.09 4.53 -9.81 -0.04 -7.13 15 17 N -0.40 -7.87 4.05 -63.53 -0.26 -8.13 15 18 C 0.11 1.48 11.03 59.84 0.66 2.14 15 19 H 0.07 0.68 8.14 -51.93 -0.42 0.26 15 20 H 0.06 0.57 7.65 -51.93 -0.40 0.18 15 21 H 0.08 0.78 8.14 -51.93 -0.42 0.36 15 22 H 0.15 2.71 8.06 -52.48 -0.42 2.29 15 23 H 0.27 7.29 8.30 -40.82 -0.34 6.95 15 24 H 0.14 3.44 8.06 -52.48 -0.42 3.02 15 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 15 26 H 0.07 1.00 8.14 -51.93 -0.42 0.57 15 27 H 0.08 0.82 7.58 -51.93 -0.39 0.42 15 LS Contribution 242.05 15.07 3.65 3.65 Total: -1.00 -36.41 242.05 -6.49 -42.90 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: -2.87 Total: -1.01 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -2.51 Total: -9.47 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: 0.28 Total: -51.61 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -36.41 -6.49 -42.90 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074309153.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.842 kcal (2) G-P(sol) polarization free energy of solvation -36.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds