Wall clock time and date at job start Mon Mar 30 2020 02:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34500 * 125.38567 * 2 1 4 4 C 1.46555 * 107.42584 * 179.85985 * 3 2 1 5 5 N 1.31644 * 144.46310 * 179.97438 * 4 3 2 6 6 C 1.35078 * 109.18169 * 180.42305 * 5 4 3 7 7 C 1.41186 * 126.22090 * 180.02562 * 6 5 4 8 8 H 1.08000 * 120.00070 * 180.02562 * 7 6 5 9 9 C 1.39507 * 120.00036 * 0.02614 * 7 6 5 10 10 N 1.31132 * 119.99905 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99907 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46666 * 90.00267 * 11 9 7 13 13 H 1.48498 * 109.47095 * 209.99852 * 11 9 7 14 14 H 1.48498 * 109.47172 * 330.00111 * 11 9 7 15 15 C 1.39409 * 107.55760 * 359.97438 * 6 5 4 16 16 N 1.35940 * 106.65161 * 0.02562 * 15 6 5 17 17 N 1.37233 * 125.38414 * 180.30671 * 2 1 3 18 18 C 1.46492 * 125.39659 * 359.97438 * 17 2 1 19 19 H 1.09002 * 109.47152 * 269.69512 * 1 2 3 20 20 H 1.09001 * 109.46980 * 149.69612 * 1 2 3 21 21 H 1.09004 * 109.47113 * 29.69593 * 1 2 3 22 22 H 1.08004 * 126.28935 * 359.95898 * 3 2 1 23 23 H 0.97002 * 120.00173 * 180.02562 * 10 9 7 24 24 H 1.08003 * 126.67598 * 180.02562 * 15 6 5 25 25 H 1.08999 * 109.47548 * 89.97785 * 18 17 2 26 26 H 1.09003 * 109.47053 * 209.97757 * 18 17 2 27 27 H 1.09004 * 109.47316 * 329.97717 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2859 1.0965 0.0000 4 6 3.6800 0.6446 0.0034 5 7 4.9350 1.0422 0.0050 6 6 5.7434 -0.0400 -0.0009 7 6 7.1552 -0.0267 -0.0009 8 1 7.7039 -0.9569 -0.0064 9 6 7.8413 1.1879 0.0063 10 7 7.1750 2.3173 0.0135 11 14 9.7093 1.2054 0.0071 12 1 10.2047 1.2181 -1.3928 13 1 10.1926 2.4185 0.7142 14 1 10.2154 -0.0064 0.7004 15 6 4.9302 -1.1723 -0.0059 16 7 3.6451 -0.7290 -0.0034 17 7 2.3017 -1.1188 -0.0060 18 6 1.8195 -2.5021 -0.0129 19 1 -0.3633 -0.0055 1.0277 20 1 -0.3633 -0.8873 -0.5186 21 1 -0.3633 0.8927 -0.5091 22 1 1.9463 2.1218 -0.0006 23 1 7.6521 3.1619 0.0181 24 1 5.2575 -2.2016 -0.0108 25 1 1.6991 -2.8399 -1.0422 26 1 2.5406 -3.1408 0.4971 27 1 0.8598 -2.5549 0.5014 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074309153.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:13 Heat of formation + Delta-G solvation = 120.470285 kcal Electronic energy + Delta-G solvation = -12820.269025 eV Core-core repulsion = 10581.000086 eV Total energy + Delta-G solvation = -2239.268939 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.83740 -38.86589 -35.11609 -33.58164 -32.27443 -30.41866 -29.05841 -26.68303 -25.64853 -21.79854 -21.39609 -20.70387 -18.30176 -17.63220 -16.91198 -16.77365 -15.86221 -14.88870 -14.59559 -14.51813 -13.95276 -13.92298 -13.73608 -13.35744 -12.90590 -12.89657 -12.70241 -12.35475 -12.01178 -11.80289 -10.96135 -10.74543 -10.01292 -9.17001 -8.23268 -8.14622 -6.18273 0.65464 1.00375 1.37469 1.42818 1.58936 1.82429 2.34715 2.74979 3.12814 3.63774 3.71243 4.01927 4.06507 4.31042 4.50330 4.53866 4.65718 4.83835 4.85941 5.10495 5.17522 5.36138 5.52407 5.63995 5.88601 6.30554 6.48825 6.89931 7.18120 7.26930 8.06512 8.72678 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.074494 B = 0.008469 C = 0.007647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 375.778794 B = 3305.395975 C = 3660.727210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.126 3.874 3 C -0.237 4.237 4 C 0.157 3.843 5 N -0.515 5.515 6 C 0.189 3.811 7 C -0.490 4.490 8 H 0.085 0.915 9 C 0.022 3.978 10 N -0.814 5.814 11 Si 0.993 3.007 12 H -0.264 1.264 13 H -0.272 1.272 14 H -0.255 1.255 15 C -0.237 4.237 16 N -0.297 5.297 17 N -0.401 5.401 18 C 0.095 3.905 19 H 0.102 0.898 20 H 0.096 0.904 21 H 0.107 0.893 22 H 0.169 0.831 23 H 0.271 0.729 24 H 0.161 0.839 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.185 -6.772 0.091 14.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.015 3.985 3 C -0.267 4.267 4 C -0.094 4.094 5 N -0.243 5.243 6 C 0.060 3.940 7 C -0.525 4.525 8 H 0.103 0.897 9 C -0.193 4.193 10 N -0.441 5.441 11 Si 0.813 3.187 12 H -0.189 1.189 13 H -0.197 1.197 14 H -0.179 1.179 15 C -0.364 4.364 16 N -0.072 5.072 17 N -0.196 5.196 18 C -0.044 4.044 19 H 0.121 0.879 20 H 0.115 0.885 21 H 0.126 0.874 22 H 0.186 0.814 23 H 0.081 0.919 24 H 0.178 0.822 25 H 0.095 0.905 26 H 0.087 0.913 27 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -12.974 -6.351 0.098 14.445 hybrid contribution 1.049 -0.765 -0.028 1.298 sum -11.925 -7.116 0.070 13.887 Atomic orbital electron populations 1.20690 0.80962 1.06053 1.05306 1.21398 0.95223 0.82476 0.99402 1.20975 0.84757 1.00044 1.20887 1.24127 0.96210 0.80692 1.08356 1.70996 0.96539 1.29123 1.27674 1.18778 0.93889 0.85533 0.95784 1.18813 0.88650 0.94358 1.50699 0.89738 1.26829 1.05699 0.94307 0.92429 1.70350 1.38567 0.98458 1.36735 0.85080 0.75709 0.78761 0.79129 1.18914 1.19678 1.17874 1.22046 0.77878 0.99346 1.37162 1.45561 0.97128 1.08922 1.55552 1.46637 0.90550 1.07757 1.74687 1.22253 1.01842 0.76247 1.04079 0.87911 0.88481 0.87424 0.81400 0.91911 0.82202 0.90458 0.91295 0.84617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.09 9.84 71.24 0.70 -0.39 15 2 C 0.13 3.97 6.92 40.86 0.28 4.25 15 3 C -0.24 -9.90 10.95 23.58 0.26 -9.64 15 4 C 0.16 8.89 8.76 135.78 1.19 10.08 15 5 N -0.52 -33.94 9.50 -182.18 -1.73 -35.67 15 6 C 0.19 12.19 6.66 39.65 0.26 12.45 15 7 C -0.49 -30.52 9.36 23.30 0.22 -30.30 15 8 H 0.08 4.87 7.84 -2.91 -0.02 4.85 15 9 C 0.02 1.29 5.49 85.10 0.47 1.75 15 10 N -0.81 -51.35 11.93 21.76 0.26 -51.09 15 11 Si 0.99 43.72 29.56 68.60 2.03 45.74 15 12 H -0.26 -11.12 7.11 99.48 0.71 -10.41 15 13 H -0.27 -11.45 7.11 99.48 0.71 -10.74 15 14 H -0.26 -10.62 7.11 99.48 0.71 -9.91 15 15 C -0.24 -13.32 12.10 84.34 1.02 -12.30 15 16 N -0.30 -15.22 4.53 -184.94 -0.84 -16.05 15 17 N -0.40 -14.58 4.05 -354.91 -1.44 -16.02 15 18 C 0.10 2.14 11.03 127.77 1.41 3.55 15 19 H 0.10 1.16 8.14 -2.39 -0.02 1.14 15 20 H 0.10 0.96 7.65 -2.39 -0.02 0.94 15 21 H 0.11 1.31 8.14 -2.38 -0.02 1.29 15 22 H 0.17 6.07 8.06 -2.91 -0.02 6.05 15 23 H 0.27 15.55 8.30 -92.71 -0.77 14.78 15 24 H 0.16 8.01 8.06 -2.91 -0.02 7.99 15 25 H 0.08 1.50 8.14 -2.39 -0.02 1.48 15 26 H 0.07 1.67 8.14 -2.39 -0.02 1.65 15 27 H 0.14 1.72 7.58 -2.38 -0.02 1.71 15 Total: -1.00 -88.08 242.05 5.26 -82.82 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: 1.17 Total: 10.81 kcal Atomic # 6 Polarization: -26.35 SS G_CDS: 5.81 Total: -20.54 kcal Atomic # 7 Polarization: -115.08 SS G_CDS: -3.75 Total: -118.83 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Total: -88.08 5.26 -82.82 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074309153.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.287 kcal (2) G-P(sol) polarization free energy of solvation -88.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds