Wall clock time and date at job start Mon Mar 30 2020 02:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99963 * 2 1 4 4 H 1.48504 * 109.47224 * 240.00007 * 3 2 1 5 5 H 1.48500 * 109.47052 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47187 * 120.00127 * 3 2 1 7 7 C 1.37879 * 120.00403 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00222 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99653 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47307 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47578 * 179.97438 * 10 9 7 12 12 C 1.50689 * 109.47479 * 179.97438 * 11 10 9 13 13 C 1.38293 * 119.92619 * 90.00264 * 12 11 10 14 14 C 1.38103 * 120.07544 * 180.02562 * 13 12 11 15 15 C 1.38914 * 119.92585 * 0.02562 * 14 13 12 16 16 N 1.39671 * 120.07130 * 179.97438 * 15 14 13 17 17 C 1.38912 * 119.84788 * 0.25342 * 15 14 13 18 18 C 1.38098 * 119.92495 * 359.48977 * 17 15 14 19 19 H 0.96996 * 119.99884 * 359.97438 * 1 2 3 20 20 H 1.08999 * 109.47659 * 60.00100 * 9 7 2 21 21 H 1.09002 * 109.47303 * 299.99874 * 9 7 2 22 22 H 1.09004 * 109.46812 * 60.00265 * 10 9 7 23 23 H 1.09002 * 109.46902 * 300.00201 * 10 9 7 24 24 H 1.09007 * 109.46938 * 59.99704 * 11 10 9 25 25 H 1.09003 * 109.47088 * 300.00886 * 11 10 9 26 26 H 1.08001 * 119.95818 * 0.04180 * 13 12 11 27 27 H 1.07999 * 120.03416 * 179.97438 * 14 13 12 28 28 H 0.97001 * 120.00529 * 0.02562 * 16 15 14 29 29 H 0.97005 * 119.99745 * 179.72366 * 16 15 14 30 30 H 1.08005 * 120.03088 * 179.72680 * 17 15 14 31 31 H 1.08005 * 119.96252 * 180.25688 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0018 11 6 1.4805 -4.9871 -0.0012 12 6 2.4597 -6.1325 -0.0031 13 6 2.9098 -6.6573 1.1946 14 6 3.8077 -7.7067 1.1964 15 6 4.2591 -8.2346 -0.0066 16 7 5.1675 -9.2955 -0.0082 17 6 3.8094 -7.7012 -1.2078 18 6 2.9075 -6.6554 -1.2024 19 1 -0.4850 0.8400 0.0004 20 1 0.6242 -2.5567 -0.8903 21 1 0.6249 -2.5571 0.8897 22 1 2.8727 -3.6047 0.8878 23 1 2.8714 -3.6039 -0.8923 24 1 0.8528 -5.0447 -0.8905 25 1 0.8547 -5.0449 0.8894 26 1 2.5585 -6.2463 2.1295 27 1 4.1590 -8.1158 2.1321 28 1 5.4836 -9.6648 0.8312 29 1 5.4790 -9.6660 -0.8489 30 1 4.1618 -8.1065 -2.1448 31 1 2.5543 -6.2429 -2.1360 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075564759.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:45 Heat of formation + Delta-G solvation = -4.082689 kcal Electronic energy + Delta-G solvation = -12291.168578 eV Core-core repulsion = 10150.038961 eV Total energy + Delta-G solvation = -2141.129618 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.21903 -35.47050 -33.63749 -31.90870 -30.65093 -29.02712 -25.98647 -23.23782 -22.59862 -20.85199 -19.85591 -16.97855 -16.78256 -16.20755 -15.00812 -14.40145 -14.40046 -13.46348 -13.38540 -13.16308 -13.03007 -12.29404 -12.04472 -11.23756 -11.19122 -10.83222 -10.78655 -10.54135 -10.40625 -10.09605 -9.55198 -9.19312 -8.98170 -8.69496 -8.27426 -7.25757 -5.92914 -3.94804 1.66667 1.85439 3.37899 3.41724 3.44789 3.89109 4.12098 4.52080 5.08187 5.18411 5.40802 5.42462 5.66597 5.73793 5.98219 5.98277 6.26411 6.30352 6.47903 6.51359 6.69801 6.76729 7.05188 7.10066 7.16825 7.26642 7.57665 7.74536 7.76738 7.93278 8.08639 8.52081 9.12554 9.68725 11.18390 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.066238 B = 0.005331 C = 0.005230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.617931 B = 5251.209523 C = 5352.631530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.103 4.103 11 C -0.078 4.078 12 C -0.119 4.119 13 C -0.072 4.072 14 C -0.196 4.196 15 C 0.197 3.803 16 N -0.886 5.886 17 C -0.196 4.196 18 C -0.072 4.072 19 H 0.260 0.740 20 H 0.015 0.985 21 H 0.015 0.985 22 H 0.046 0.954 23 H 0.046 0.954 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.120 0.880 27 H 0.114 0.886 28 H 0.394 0.606 29 H 0.394 0.606 30 H 0.114 0.886 31 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.327 -16.574 -0.013 18.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.557 4.557 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.140 4.140 11 C -0.115 4.115 12 C -0.121 4.121 13 C -0.091 4.091 14 C -0.219 4.219 15 C 0.094 3.906 16 N -0.426 5.426 17 C -0.219 4.219 18 C -0.091 4.091 19 H 0.070 0.930 20 H 0.033 0.967 21 H 0.033 0.967 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.138 0.862 27 H 0.132 0.868 28 H 0.221 0.779 29 H 0.221 0.779 30 H 0.132 0.868 31 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 7.135 -16.403 -0.013 17.887 hybrid contribution 0.762 0.654 0.001 1.004 sum 7.896 -15.749 -0.013 17.618 Atomic orbital electron populations 1.69959 1.06031 1.26574 1.51119 1.25024 0.94830 0.99161 0.95463 0.86680 0.79593 0.83255 0.78594 1.20280 1.21323 1.20288 1.21262 0.93014 0.91216 1.50239 0.92820 1.19129 0.94079 0.91409 0.97128 1.21622 0.98896 0.93192 1.00334 1.20670 0.96030 0.92820 1.02024 1.19965 1.00805 0.98667 0.92667 1.20840 0.95675 0.94707 0.97888 1.20519 1.04027 1.01546 0.95809 1.17731 0.90303 0.88607 0.93977 1.42387 1.51412 1.38447 1.10308 1.20518 1.03977 1.01569 0.95830 1.20837 0.95646 0.94754 0.97872 0.93037 0.96661 0.96659 0.93494 0.93483 0.91833 0.91827 0.86182 0.86790 0.77859 0.77860 0.86788 0.86182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.55 13.29 55.43 0.74 -26.81 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.52 -15.18 9.11 -34.44 -0.31 -15.49 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.10 -2.23 5.13 -26.73 -0.14 -2.36 16 11 C -0.08 -1.41 5.34 -27.89 -0.15 -1.56 16 12 C -0.12 -1.93 5.14 -104.59 -0.54 -2.47 16 13 C -0.07 -1.08 9.69 -39.61 -0.38 -1.46 16 14 C -0.20 -2.60 9.90 -39.38 -0.39 -2.99 16 15 C 0.20 2.47 6.75 -83.79 -0.57 1.91 16 16 N -0.89 -7.89 9.09 32.41 0.29 -7.60 16 17 C -0.20 -2.60 9.90 -39.38 -0.39 -2.99 16 18 C -0.07 -1.08 9.69 -39.62 -0.38 -1.46 16 19 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 20 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 21 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 22 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 23 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 24 H 0.06 1.12 8.08 -51.92 -0.42 0.70 16 25 H 0.06 1.12 8.09 -51.93 -0.42 0.70 16 26 H 0.12 1.67 8.06 -52.49 -0.42 1.24 16 27 H 0.11 1.26 8.06 -52.49 -0.42 0.83 16 28 H 0.39 2.78 8.84 -40.82 -0.36 2.42 16 29 H 0.39 2.78 8.84 -40.82 -0.36 2.42 16 30 H 0.11 1.26 8.06 -52.48 -0.42 0.83 16 31 H 0.12 1.67 8.06 -52.48 -0.42 1.24 16 LS Contribution 269.02 15.07 4.05 4.05 Total: -1.00 -31.74 269.02 -7.91 -39.65 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -4.49 Total: 0.55 kcal Atomic # 6 Polarization: -23.46 SS G_CDS: -3.49 Total: -26.95 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: 1.03 Total: -34.41 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -31.74 -7.91 -39.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075564759.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.567 kcal (2) G-P(sol) polarization free energy of solvation -31.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds