Wall clock time and date at job start Mon Mar 30 2020 02:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47166 * 2 1 4 4 C 1.38260 * 119.99559 * 264.99427 * 3 2 1 5 5 C 1.38212 * 119.99650 * 179.71963 * 4 3 2 6 6 C 1.38255 * 120.00300 * 0.28729 * 5 4 3 7 7 C 1.38216 * 119.99744 * 359.97134 * 6 5 4 8 8 C 1.38208 * 120.00333 * 85.19279 * 3 2 1 9 9 C 1.50698 * 120.00186 * 0.03695 * 8 3 2 10 10 N 1.46502 * 109.46972 * 80.16985 * 9 8 3 11 11 C 1.36938 * 120.00197 * 180.02562 * 10 9 8 12 12 H 1.08007 * 119.99507 * 0.02562 * 11 10 9 13 13 C 1.38807 * 120.00515 * 180.02562 * 11 10 9 14 14 N 1.31617 * 120.00567 * 179.97438 * 13 11 10 15 15 Si 1.86808 * 119.99494 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.46919 * 90.00063 * 15 13 11 17 17 H 1.48499 * 109.46859 * 210.00046 * 15 13 11 18 18 H 1.48492 * 109.46965 * 329.99894 * 15 13 11 19 19 H 1.09001 * 109.47000 * 300.00106 * 1 2 3 20 20 H 1.09000 * 109.47225 * 60.00352 * 1 2 3 21 21 H 1.09003 * 109.47047 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.47450 * 239.99707 * 2 1 3 23 23 H 1.09000 * 109.47225 * 119.99648 * 2 1 3 24 24 H 1.08002 * 120.00476 * 0.02562 * 4 3 2 25 25 H 1.07999 * 119.99941 * 180.25946 * 5 4 3 26 26 H 1.08005 * 120.00230 * 179.97438 * 6 5 4 27 27 H 1.08002 * 119.99715 * 179.97438 * 7 6 5 28 28 H 1.09001 * 109.47640 * 200.17138 * 9 8 3 29 29 H 1.09000 * 109.47091 * 320.17597 * 9 8 3 30 30 H 0.96996 * 119.99986 * 0.02562 * 10 9 8 31 31 H 0.96999 * 119.99735 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3612 2.0376 -1.1929 5 6 2.8164 3.3426 -1.1934 6 6 2.9485 4.0292 -0.0007 7 6 2.6248 3.4108 1.1922 8 6 2.1681 2.1058 1.1927 9 6 1.8147 1.4317 2.4933 10 7 2.9203 0.5660 2.9109 11 6 2.8255 -0.1539 4.0719 12 1 1.9353 -0.0838 4.6795 13 6 3.8733 -0.9737 4.4679 14 7 3.7823 -1.6653 5.5840 15 14 5.4132 -1.0943 3.4172 16 1 6.3879 -0.0598 3.8471 17 1 6.0176 -2.4412 3.5777 18 1 5.0580 -0.8779 1.9917 19 1 -0.3633 0.5139 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 1.8934 -0.5139 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 2.2578 1.5015 -2.1247 25 1 3.0694 3.8259 -2.1255 26 1 3.3047 5.0489 -0.0011 27 1 2.7284 3.9470 2.1240 28 1 1.6365 2.1879 3.2579 29 1 0.9145 0.8319 2.3588 30 1 3.7196 0.5028 2.3650 31 1 4.5144 -2.2384 5.8604 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082774701.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:53 Heat of formation + Delta-G solvation = 25.229162 kcal Electronic energy + Delta-G solvation = -13035.520966 eV Core-core repulsion = 10895.662406 eV Total energy + Delta-G solvation = -2139.858561 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.38171 -34.99874 -33.68815 -31.88123 -30.18591 -29.08362 -25.79369 -23.56054 -22.32124 -21.29210 -20.10408 -17.71719 -16.02834 -15.49656 -14.82190 -14.58356 -13.85027 -13.49790 -13.19650 -12.97721 -12.73848 -12.39544 -12.16763 -11.73817 -11.59901 -11.27094 -10.88587 -10.83277 -10.47020 -10.30408 -10.07305 -9.58935 -8.89418 -8.56121 -8.32358 -7.21946 -5.76215 -3.11607 1.61349 1.65087 3.39346 3.44079 3.46753 4.00857 4.60676 5.02829 5.10020 5.22309 5.28460 5.44308 5.53217 5.64757 5.71545 5.74421 5.83346 5.84812 6.15105 6.19863 6.26888 6.31523 6.45017 6.59032 6.67839 6.72384 6.82528 7.12907 7.29264 7.99775 8.42906 9.21819 9.94232 10.14954 11.42060 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.033729 B = 0.010052 C = 0.009300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.944775 B = 2784.795802 C = 3009.914634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.096 4.096 3 C -0.065 4.065 4 C -0.126 4.126 5 C -0.126 4.126 6 C -0.132 4.132 7 C -0.106 4.106 8 C -0.083 4.083 9 C 0.189 3.811 10 N -0.749 5.749 11 C -0.244 4.244 12 H 0.091 0.909 13 C 0.006 3.994 14 N -0.934 5.934 15 Si 0.881 3.119 16 H -0.284 1.284 17 H -0.291 1.291 18 H -0.276 1.276 19 H 0.059 0.941 20 H 0.047 0.953 21 H 0.056 0.944 22 H 0.063 0.937 23 H 0.095 0.905 24 H 0.116 0.884 25 H 0.115 0.885 26 H 0.116 0.884 27 H 0.122 0.878 28 H 0.033 0.967 29 H 0.041 0.959 30 H 0.362 0.638 31 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.711 8.184 -13.685 16.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.134 4.134 3 C -0.065 4.065 4 C -0.144 4.144 5 C -0.144 4.144 6 C -0.150 4.150 7 C -0.124 4.124 8 C -0.084 4.084 9 C 0.063 3.937 10 N -0.394 5.394 11 C -0.373 4.373 12 H 0.109 0.891 13 C -0.189 4.189 14 N -0.582 5.582 15 Si 0.712 3.288 16 H -0.211 1.211 17 H -0.217 1.217 18 H -0.202 1.202 19 H 0.078 0.922 20 H 0.067 0.933 21 H 0.075 0.925 22 H 0.081 0.919 23 H 0.113 0.887 24 H 0.134 0.866 25 H 0.133 0.867 26 H 0.134 0.866 27 H 0.140 0.860 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.195 0.805 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.814 8.078 -13.451 16.147 hybrid contribution 1.272 -0.082 -0.695 1.451 sum -2.543 7.996 -14.146 16.447 Atomic orbital electron populations 1.21701 0.94960 1.01535 1.01650 1.20672 0.96090 0.92763 1.03841 1.19861 0.97940 0.96236 0.92486 1.20993 1.00855 0.95187 0.97348 1.21025 1.00763 0.94894 0.97751 1.21061 1.01494 0.99750 0.92715 1.21134 0.98501 0.94770 0.98015 1.20216 0.98461 0.94113 0.95601 1.19675 0.91935 0.92567 0.89511 1.42699 1.16904 1.53209 1.26621 1.19063 1.02882 1.18130 0.97241 0.89117 1.24638 0.97971 0.99197 0.97143 1.69698 1.32908 1.32300 1.23252 0.86585 0.84605 0.77184 0.80473 1.21063 1.21696 1.20233 0.92217 0.93340 0.92540 0.91852 0.88694 0.86583 0.86687 0.86558 0.86021 0.94913 0.94163 0.80494 0.93056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.75 37.16 0.36 -1.57 16 2 C -0.10 -1.52 5.40 -27.89 -0.15 -1.67 16 3 C -0.06 -1.05 5.13 -104.63 -0.54 -1.59 16 4 C -0.13 -1.78 9.68 -39.58 -0.38 -2.16 16 5 C -0.13 -1.66 10.05 -39.58 -0.40 -2.05 16 6 C -0.13 -1.81 10.05 -39.58 -0.40 -2.20 16 7 C -0.11 -1.67 9.67 -39.58 -0.38 -2.05 16 8 C -0.08 -1.47 5.25 -104.63 -0.55 -2.01 16 9 C 0.19 3.82 5.54 -5.19 -0.03 3.79 16 10 N -0.75 -18.18 4.74 -61.08 -0.29 -18.47 16 11 C -0.24 -6.94 10.47 -15.06 -0.16 -7.10 16 12 H 0.09 2.75 8.06 -52.48 -0.42 2.32 16 13 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 14 N -0.93 -29.50 13.97 55.49 0.78 -28.72 16 15 Si 0.88 22.54 27.74 -169.99 -4.71 17.82 16 16 H -0.28 -7.25 7.11 56.52 0.40 -6.84 16 17 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 18 H -0.28 -6.74 6.52 56.52 0.37 -6.37 16 19 H 0.06 0.86 6.74 -51.93 -0.35 0.51 16 20 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 21 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.06 0.89 8.05 -51.93 -0.42 0.47 16 23 H 0.09 1.79 6.59 -51.93 -0.34 1.44 16 24 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 25 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 26 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 27 H 0.12 1.80 8.04 -52.49 -0.42 1.38 16 28 H 0.03 0.66 8.00 -51.93 -0.42 0.25 16 29 H 0.04 0.81 5.86 -51.93 -0.30 0.50 16 30 H 0.36 8.82 5.52 -40.82 -0.23 8.60 16 31 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 LS Contribution 259.30 15.07 3.91 3.91 Total: -1.00 -31.06 259.30 -7.22 -38.28 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -4.18 Total: 5.71 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: -2.72 Total: -18.53 kcal Atomic # 7 Polarization: -47.68 SS G_CDS: 0.49 Total: -47.19 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.71 Total: 17.82 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -31.06 -7.22 -38.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082774701.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.508 kcal (2) G-P(sol) polarization free energy of solvation -31.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds