Wall clock time and date at job start Mon Mar 30 2020 02:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47166 * 2 1 4 4 C 1.38260 * 119.99559 * 264.99427 * 3 2 1 5 5 C 1.38212 * 119.99650 * 179.71963 * 4 3 2 6 6 C 1.38255 * 120.00300 * 0.28729 * 5 4 3 7 7 C 1.38216 * 119.99744 * 359.97134 * 6 5 4 8 8 C 1.38208 * 120.00333 * 85.19279 * 3 2 1 9 9 C 1.50698 * 120.00186 * 0.03695 * 8 3 2 10 10 N 1.46502 * 109.46972 * 80.16985 * 9 8 3 11 11 C 1.36938 * 120.00197 * 180.02562 * 10 9 8 12 12 H 1.08007 * 119.99507 * 0.02562 * 11 10 9 13 13 C 1.38807 * 120.00515 * 180.02562 * 11 10 9 14 14 N 1.31617 * 120.00567 * 179.97438 * 13 11 10 15 15 Si 1.86808 * 119.99494 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.46919 * 90.00063 * 15 13 11 17 17 H 1.48499 * 109.46859 * 210.00046 * 15 13 11 18 18 H 1.48492 * 109.46965 * 329.99894 * 15 13 11 19 19 H 1.09001 * 109.47000 * 300.00106 * 1 2 3 20 20 H 1.09000 * 109.47225 * 60.00352 * 1 2 3 21 21 H 1.09003 * 109.47047 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.47450 * 239.99707 * 2 1 3 23 23 H 1.09000 * 109.47225 * 119.99648 * 2 1 3 24 24 H 1.08002 * 120.00476 * 0.02562 * 4 3 2 25 25 H 1.07999 * 119.99941 * 180.25946 * 5 4 3 26 26 H 1.08005 * 120.00230 * 179.97438 * 6 5 4 27 27 H 1.08002 * 119.99715 * 179.97438 * 7 6 5 28 28 H 1.09001 * 109.47640 * 200.17138 * 9 8 3 29 29 H 1.09000 * 109.47091 * 320.17597 * 9 8 3 30 30 H 0.96996 * 119.99986 * 0.02562 * 10 9 8 31 31 H 0.96999 * 119.99735 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3612 2.0376 -1.1929 5 6 2.8164 3.3426 -1.1934 6 6 2.9485 4.0292 -0.0007 7 6 2.6248 3.4108 1.1922 8 6 2.1681 2.1058 1.1927 9 6 1.8147 1.4317 2.4933 10 7 2.9203 0.5660 2.9109 11 6 2.8255 -0.1539 4.0719 12 1 1.9353 -0.0838 4.6795 13 6 3.8733 -0.9737 4.4679 14 7 3.7823 -1.6653 5.5840 15 14 5.4132 -1.0943 3.4172 16 1 6.3879 -0.0598 3.8471 17 1 6.0176 -2.4412 3.5777 18 1 5.0580 -0.8779 1.9917 19 1 -0.3633 0.5139 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 1.8934 -0.5139 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 2.2578 1.5015 -2.1247 25 1 3.0694 3.8259 -2.1255 26 1 3.3047 5.0489 -0.0011 27 1 2.7284 3.9470 2.1240 28 1 1.6365 2.1879 3.2579 29 1 0.9145 0.8319 2.3588 30 1 3.7196 0.5028 2.3650 31 1 4.5144 -2.2384 5.8604 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082774701.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:52 Heat of formation + Delta-G solvation = 6.670632 kcal Electronic energy + Delta-G solvation = -13036.325725 eV Core-core repulsion = 10895.662406 eV Total energy + Delta-G solvation = -2140.663319 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.57138 -36.76015 -34.97128 -33.77045 -31.79534 -30.24306 -27.45908 -24.84373 -24.05882 -22.63912 -21.36537 -19.78894 -17.21763 -16.74015 -16.66053 -16.09819 -15.52121 -14.83588 -14.65563 -14.38376 -14.08344 -13.96663 -13.68702 -13.27829 -12.91835 -12.83125 -12.58062 -12.22989 -11.99984 -11.84159 -11.65177 -11.45320 -11.02153 -9.70561 -9.49278 -9.32177 -8.05218 -5.38479 0.45564 0.53062 1.35266 1.37288 1.45142 2.45360 2.85680 3.26061 3.83353 3.88854 3.96501 4.10190 4.20600 4.35783 4.48812 4.57681 4.68541 4.71207 4.88329 4.89632 5.05365 5.15262 5.17877 5.33592 5.42922 5.63785 5.63969 5.73435 5.88377 6.16654 6.19725 7.03914 7.79219 8.00419 9.16258 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.033729 B = 0.010052 C = 0.009300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.944775 B = 2784.795802 C = 3009.914634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.096 4.096 3 C -0.078 4.078 4 C -0.127 4.127 5 C -0.117 4.117 6 C -0.130 4.130 7 C -0.119 4.119 8 C -0.109 4.109 9 C 0.192 3.808 10 N -0.748 5.748 11 C -0.233 4.233 12 H 0.059 0.941 13 C -0.059 4.059 14 N -0.981 5.981 15 Si 0.951 3.049 16 H -0.279 1.279 17 H -0.291 1.291 18 H -0.257 1.257 19 H 0.043 0.957 20 H 0.068 0.932 21 H 0.063 0.937 22 H 0.081 0.919 23 H 0.056 0.944 24 H 0.142 0.858 25 H 0.151 0.849 26 H 0.146 0.854 27 H 0.122 0.878 28 H 0.027 0.973 29 H 0.037 0.963 30 H 0.364 0.636 31 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.890 9.589 -16.858 19.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.133 4.133 3 C -0.079 4.079 4 C -0.145 4.145 5 C -0.135 4.135 6 C -0.148 4.148 7 C -0.137 4.137 8 C -0.110 4.110 9 C 0.066 3.934 10 N -0.393 5.393 11 C -0.364 4.364 12 H 0.077 0.923 13 C -0.250 4.250 14 N -0.632 5.632 15 Si 0.779 3.221 16 H -0.205 1.205 17 H -0.218 1.218 18 H -0.182 1.182 19 H 0.062 0.938 20 H 0.087 0.913 21 H 0.082 0.918 22 H 0.100 0.900 23 H 0.075 0.925 24 H 0.160 0.840 25 H 0.169 0.831 26 H 0.163 0.837 27 H 0.140 0.860 28 H 0.045 0.955 29 H 0.055 0.945 30 H 0.197 0.803 31 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.018 9.517 -16.656 19.419 hybrid contribution 0.913 -0.439 0.266 1.047 sum -2.106 9.078 -16.390 18.854 Atomic orbital electron populations 1.21664 0.93762 1.02094 1.01858 1.20636 0.97224 0.92677 1.02790 1.19981 0.98563 0.96364 0.92956 1.21305 0.99978 0.95859 0.97345 1.21482 0.98675 0.94369 0.98970 1.21406 1.00387 1.01031 0.91964 1.21274 0.98849 0.94271 0.99342 1.19993 1.01330 0.95161 0.94475 1.19684 0.90579 0.91801 0.91307 1.42674 1.18122 1.53275 1.25256 1.19038 1.01529 1.17864 0.97962 0.92327 1.25424 1.01583 0.99360 0.98672 1.69870 1.34133 1.33710 1.25466 0.85460 0.80150 0.76971 0.79556 1.20500 1.21788 1.18229 0.93751 0.91289 0.91846 0.90016 0.92486 0.84017 0.83104 0.83650 0.85989 0.95476 0.94503 0.80310 0.93237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.58 9.75 71.98 0.70 -2.88 16 2 C -0.10 -2.90 5.40 29.85 0.16 -2.74 16 3 C -0.08 -2.39 5.13 -19.87 -0.10 -2.49 16 4 C -0.13 -3.10 9.68 22.27 0.22 -2.88 16 5 C -0.12 -2.52 10.05 22.27 0.22 -2.30 16 6 C -0.13 -3.07 10.05 22.27 0.22 -2.85 16 7 C -0.12 -3.54 9.67 22.27 0.22 -3.33 16 8 C -0.11 -3.74 5.25 -19.87 -0.10 -3.84 16 9 C 0.19 7.89 5.54 85.63 0.47 8.37 16 10 N -0.75 -36.76 4.74 -347.17 -1.64 -38.40 16 11 C -0.23 -13.69 10.47 84.03 0.88 -12.81 16 12 H 0.06 3.74 8.06 -2.91 -0.02 3.72 16 13 C -0.06 -3.54 5.50 84.86 0.47 -3.07 16 14 N -0.98 -63.79 13.97 21.65 0.30 -63.49 16 15 Si 0.95 46.91 27.74 68.60 1.90 48.82 16 16 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 17 H -0.29 -14.33 7.11 99.48 0.71 -13.63 16 18 H -0.26 -11.75 6.52 99.48 0.65 -11.10 16 19 H 0.04 1.27 6.74 -2.39 -0.02 1.26 16 20 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 21 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 22 H 0.08 2.11 8.05 -2.38 -0.02 2.09 16 23 H 0.06 2.15 6.59 -2.39 -0.02 2.14 16 24 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 25 H 0.15 2.20 8.06 -2.91 -0.02 2.17 16 26 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 27 H 0.12 3.50 8.04 -2.91 -0.02 3.48 16 28 H 0.03 1.13 8.00 -2.39 -0.02 1.12 16 29 H 0.04 1.54 5.86 -2.39 -0.01 1.52 16 30 H 0.36 17.53 5.52 -92.71 -0.51 17.01 16 31 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 Total: -1.00 -67.92 259.30 4.46 -63.46 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: 0.54 Total: 20.44 kcal Atomic # 6 Polarization: -34.18 SS G_CDS: 3.36 Total: -30.82 kcal Atomic # 7 Polarization: -100.55 SS G_CDS: -1.34 Total: -101.89 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 1.90 Total: 48.82 kcal Total: -67.92 4.46 -63.46 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082774701.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.131 kcal (2) G-P(sol) polarization free energy of solvation -67.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds