Wall clock time and date at job start Mon Mar 30 2020 01:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21254 * 119.99574 * 2 1 4 4 C 1.47186 * 120.00262 * 179.97438 * 2 1 3 5 5 C 1.39929 * 120.12869 * 0.04647 * 4 2 1 6 6 C 1.37953 * 120.00842 * 179.97438 * 5 4 2 7 7 C 1.38235 * 120.26910 * 359.97438 * 6 5 4 8 8 C 1.39186 * 120.26215 * 359.97438 * 7 6 5 9 9 N 1.39334 * 120.00800 * 180.02562 * 8 7 6 10 10 C 1.36845 * 120.00195 * 359.97438 * 9 8 7 11 11 H 1.08004 * 119.99412 * 359.97438 * 10 9 8 12 12 C 1.38792 * 120.00553 * 180.02562 * 10 9 8 13 13 N 1.31599 * 119.99803 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00213 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.46863 * 60.00039 * 14 12 10 16 16 H 1.48497 * 109.47017 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47093 * 299.99819 * 14 12 10 18 18 C 1.38785 * 119.98741 * 0.02562 * 8 7 6 19 19 H 1.08999 * 109.47298 * 270.00575 * 1 2 3 20 20 H 1.09004 * 109.47161 * 30.00952 * 1 2 3 21 21 H 1.09003 * 109.46888 * 150.00192 * 1 2 3 22 22 H 1.08004 * 119.99506 * 359.97438 * 5 4 2 23 23 H 1.07995 * 119.86500 * 179.97438 * 6 5 4 24 24 H 1.07999 * 119.86874 * 180.02562 * 7 6 5 25 25 H 0.97003 * 120.00480 * 179.97438 * 9 8 7 26 26 H 0.97002 * 119.99800 * 180.02562 * 13 12 10 27 27 H 1.07998 * 120.13138 * 179.73045 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 6 2.2430 -1.2746 0.0006 5 6 1.5461 -2.4881 0.0001 6 6 2.2384 -3.6813 0.0001 7 6 3.6208 -3.6848 0.0000 8 6 4.3253 -2.4844 -0.0006 9 7 5.7186 -2.4941 -0.0012 10 6 6.3946 -3.6840 -0.0007 11 1 5.8480 -4.6155 0.0006 12 6 7.7824 -3.6938 -0.0008 13 7 8.4484 -2.5587 -0.0019 14 14 8.7051 -5.3180 0.0006 15 1 8.3408 -6.0952 -1.2111 16 1 10.1669 -5.0569 -0.0003 17 1 8.3410 -6.0930 1.2139 18 6 3.6397 -1.2777 -0.0006 19 1 -0.3634 0.0001 1.0276 20 1 -0.3634 0.8899 -0.5140 21 1 -0.3633 -0.8900 -0.5138 22 1 0.4661 -2.4904 -0.0002 23 1 1.6983 -4.6164 0.0002 24 1 4.1562 -4.6227 -0.0004 25 1 6.2095 -1.6575 -0.0021 26 1 9.4184 -2.5656 -0.0024 27 1 4.1840 -0.3449 0.0033 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083963679.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:48 Heat of formation + Delta-G solvation = -16.230044 kcal Electronic energy + Delta-G solvation = -12375.989673 eV Core-core repulsion = 10098.500212 eV Total energy + Delta-G solvation = -2277.489461 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.28038 -37.74801 -35.01251 -32.10498 -30.74722 -29.59283 -27.64667 -24.79795 -22.76192 -21.24175 -19.11599 -17.63488 -16.81735 -15.26637 -15.01734 -14.70407 -14.56046 -14.21486 -13.82217 -12.81851 -12.73850 -12.44845 -12.11984 -11.89681 -11.68805 -11.23582 -11.09266 -10.53545 -10.44285 -10.27418 -10.03791 -9.24054 -8.81845 -8.12940 -6.83758 -6.62046 -3.79927 1.44450 2.46232 3.04621 3.12892 3.14699 3.21698 3.99496 4.54623 4.62271 5.15249 5.21089 5.33101 5.56116 5.59195 5.78463 5.99744 6.10121 6.26092 6.45109 6.72200 6.81248 7.14539 7.20372 7.36661 7.42799 7.63581 7.93382 8.02002 8.68917 9.27396 9.46977 10.54342 Molecular weight = 205.08amu Principal moments of inertia in cm(-1) A = 0.060461 B = 0.007460 C = 0.006664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.997048 B = 3752.680719 C = 4200.533836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.395 3.605 3 O -0.475 6.475 4 C -0.120 4.120 5 C -0.209 4.209 6 C -0.072 4.072 7 C -0.203 4.203 8 C 0.194 3.806 9 N -0.559 5.559 10 C -0.302 4.302 11 H 0.103 0.897 12 C 0.020 3.980 13 N -0.890 5.890 14 Si 0.933 3.067 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.272 1.272 18 C -0.172 4.172 19 H 0.091 0.909 20 H 0.078 0.922 21 H 0.087 0.913 22 H 0.108 0.892 23 H 0.107 0.893 24 H 0.117 0.883 25 H 0.400 0.600 26 H 0.276 0.724 27 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.110 -1.282 0.049 10.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.275 3.725 3 O -0.352 6.352 4 C -0.122 4.122 5 C -0.232 4.232 6 C -0.092 4.092 7 C -0.228 4.228 8 C 0.073 3.927 9 N -0.161 5.161 10 C -0.432 4.432 11 H 0.120 0.880 12 C -0.184 4.184 13 N -0.527 5.527 14 Si 0.760 3.240 15 H -0.197 1.197 16 H -0.207 1.207 17 H -0.197 1.197 18 C -0.197 4.197 19 H 0.110 0.890 20 H 0.097 0.903 21 H 0.105 0.895 22 H 0.126 0.874 23 H 0.125 0.875 24 H 0.135 0.865 25 H 0.235 0.765 26 H 0.086 0.914 27 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.262 -0.854 0.048 9.302 hybrid contribution 0.770 -0.530 0.014 0.934 sum -8.493 -1.384 0.061 8.605 Atomic orbital electron populations 1.22201 0.94778 1.04269 1.04180 1.22630 0.91287 0.88239 0.70315 1.90479 1.72364 1.34816 1.37543 1.19841 0.93557 0.93629 1.05188 1.20549 0.98007 0.91536 1.13099 1.20571 0.93641 0.96774 0.98184 1.20619 0.93566 0.96790 1.11850 1.17762 0.84508 0.93302 0.97108 1.41035 1.01010 1.09036 1.65009 1.19697 0.89404 0.86366 1.47706 0.87978 1.25326 0.96717 0.99018 0.97333 1.69684 1.08901 1.25894 1.48176 0.85865 0.78290 0.80777 0.79100 1.19704 1.20688 1.19701 1.20535 0.93069 0.96304 1.09747 0.89024 0.90292 0.89461 0.87362 0.87514 0.86474 0.76463 0.91373 0.86789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.33 9.75 36.01 0.35 -1.98 15 2 C 0.40 6.78 7.23 -30.68 -0.22 6.56 15 3 O -0.47 -9.66 17.09 5.58 0.10 -9.56 15 4 C -0.12 -2.28 5.87 -105.10 -0.62 -2.89 15 5 C -0.21 -3.54 9.36 -39.05 -0.37 -3.91 15 6 C -0.07 -1.29 10.02 -39.69 -0.40 -1.68 15 7 C -0.20 -4.24 9.30 -39.23 -0.36 -4.60 15 8 C 0.19 4.44 6.61 -83.90 -0.55 3.88 15 9 N -0.56 -13.97 5.43 -9.64 -0.05 -14.03 15 10 C -0.30 -7.73 9.55 -15.11 -0.14 -7.88 15 11 H 0.10 2.48 5.67 -52.48 -0.30 2.18 15 12 C 0.02 0.50 5.50 -17.45 -0.10 0.41 15 13 N -0.89 -23.92 13.05 55.49 0.72 -23.19 15 14 Si 0.93 19.71 29.55 -169.99 -5.02 14.68 15 15 H -0.27 -5.63 7.11 56.52 0.40 -5.23 15 16 H -0.28 -5.93 7.11 56.52 0.40 -5.53 15 17 H -0.27 -5.63 7.11 56.52 0.40 -5.23 15 18 C -0.17 -3.72 9.45 -38.84 -0.37 -4.09 15 19 H 0.09 0.93 8.14 -51.93 -0.42 0.51 15 20 H 0.08 0.85 8.14 -51.93 -0.42 0.43 15 21 H 0.09 0.89 6.46 -51.93 -0.34 0.55 15 22 H 0.11 1.46 6.35 -52.48 -0.33 1.13 15 23 H 0.11 1.56 8.06 -52.49 -0.42 1.14 15 24 H 0.12 2.42 5.94 -52.49 -0.31 2.11 15 25 H 0.40 10.27 7.89 -40.82 -0.32 9.95 15 26 H 0.28 7.02 8.31 -40.82 -0.34 6.68 15 27 H 0.11 2.51 7.65 -52.49 -0.40 2.11 15 LS Contribution 241.70 15.07 3.64 3.64 Total: -1.00 -28.05 241.70 -5.80 -33.85 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -2.40 Total: 10.79 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: -2.78 Total: -16.18 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.67 Total: -37.22 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.10 Total: -9.56 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.68 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -28.05 -5.80 -33.85 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083963679.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.615 kcal (2) G-P(sol) polarization free energy of solvation -28.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds