Wall clock time and date at job start Mon Mar 30 2020 02:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38236 * 119.99930 * 2 1 4 4 C 1.38232 * 119.99964 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.99958 * 180.02562 * 4 3 2 6 6 C 1.38230 * 120.00023 * 359.97438 * 4 3 2 7 7 C 1.38235 * 120.00296 * 359.97438 * 6 4 3 8 8 C 1.50701 * 120.00512 * 180.02562 * 7 6 4 9 9 H 1.09001 * 109.46309 * 340.00439 * 8 7 6 10 10 N 1.46893 * 109.47329 * 220.00052 * 8 7 6 11 11 C 1.50699 * 109.46833 * 100.00060 * 8 7 6 12 12 H 1.08002 * 120.00516 * 359.97438 * 11 8 7 13 13 C 1.37884 * 119.99783 * 180.02562 * 11 8 7 14 14 N 1.31514 * 119.99707 * 0.02562 * 13 11 8 15 15 Si 1.86796 * 119.99956 * 180.27458 * 13 11 8 16 16 H 1.48503 * 109.47407 * 269.72718 * 15 13 11 17 17 H 1.48505 * 109.47281 * 29.72474 * 15 13 11 18 18 H 1.48501 * 109.47274 * 149.72572 * 15 13 11 19 19 C 1.38235 * 119.99778 * 0.27610 * 7 6 4 20 20 H 1.09000 * 109.47541 * 89.99624 * 1 2 3 21 21 H 1.09005 * 109.47263 * 209.99648 * 1 2 3 22 22 H 1.09005 * 109.47343 * 329.99291 * 1 2 3 23 23 H 1.08004 * 119.99885 * 0.02562 * 3 2 1 24 24 H 1.09002 * 109.47101 * 269.98298 * 5 4 3 25 25 H 1.09000 * 109.47193 * 29.97852 * 5 4 3 26 26 H 1.08996 * 109.47289 * 149.98040 * 5 4 3 27 27 H 1.08005 * 120.00250 * 179.97438 * 6 4 3 28 28 H 1.00898 * 111.00203 * 176.04578 * 10 8 7 29 29 H 1.00899 * 111.00326 * 299.99840 * 10 8 7 30 30 H 0.97005 * 119.99656 * 179.97438 * 14 13 11 31 31 H 1.08006 * 120.00464 * 179.72453 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.3340 2.5023 0.0011 6 6 4.2717 0.0001 0.0016 7 6 3.5806 -1.1971 0.0027 8 6 4.3340 -2.5022 0.0044 9 1 5.3521 -2.3343 -0.3468 10 7 3.6604 -3.4578 -0.8850 11 6 4.3709 -3.0590 1.4043 12 1 3.8966 -2.5214 2.2120 13 6 5.0112 -4.2544 1.6541 14 7 5.5900 -4.9083 0.6708 15 14 5.0503 -4.9484 3.3879 16 1 6.2562 -4.4470 4.0948 17 1 3.8324 -4.5184 4.1209 18 1 5.0934 -6.4315 3.3266 19 6 2.1982 -1.1972 -0.0031 20 1 -0.3634 0.0001 -1.0276 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3634 0.8899 0.5140 23 1 1.6581 2.1325 0.0004 24 1 4.5163 2.8170 -1.0264 25 1 3.7445 3.2619 0.5146 26 1 5.2860 2.3720 0.5156 27 1 5.3517 0.0000 0.0016 28 1 4.1815 -4.3192 -0.9514 29 1 2.7141 -3.6302 -0.5803 30 1 6.0408 -5.7491 0.8466 31 1 1.6582 -2.1325 -0.0068 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084332743.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:16 Heat of formation + Delta-G solvation = 0.087080 kcal Electronic energy + Delta-G solvation = -12959.828441 eV Core-core repulsion = 10818.879638 eV Total energy + Delta-G solvation = -2140.948803 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.90403 -34.90035 -32.96543 -31.86859 -29.79593 -26.90866 -26.14797 -25.75567 -22.82865 -20.10869 -19.23009 -16.47414 -15.80679 -15.09186 -14.72611 -13.91297 -13.58392 -13.33153 -12.88142 -12.82429 -12.35382 -12.20781 -12.11563 -11.58874 -11.29349 -11.21961 -10.92756 -10.72768 -10.55203 -10.25352 -9.96143 -9.50493 -8.64914 -7.86360 -7.79628 -7.16651 -6.08258 -4.25118 2.09161 2.20092 3.22358 3.29451 3.33672 4.30249 4.54064 5.13432 5.27530 5.39807 5.55308 5.71824 5.72157 5.87977 5.94799 6.06410 6.14893 6.17325 6.21983 6.43571 6.71728 6.77477 6.87184 7.20522 7.24455 7.33250 7.73980 7.75492 7.88460 8.12652 8.68374 8.94414 9.13031 9.46589 10.88934 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.035037 B = 0.009239 C = 0.008705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.961218 B = 3029.987028 C = 3215.729990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.094 4.094 3 C -0.148 4.148 4 C -0.093 4.093 5 C -0.107 4.107 6 C -0.130 4.130 7 C -0.017 4.017 8 C 0.238 3.762 9 H 0.046 0.954 10 N -0.850 5.850 11 C -0.542 4.542 12 H 0.056 0.944 13 C 0.065 3.935 14 N -0.894 5.894 15 Si 0.897 3.103 16 H -0.279 1.279 17 H -0.274 1.274 18 H -0.285 1.285 19 C -0.113 4.113 20 H 0.063 0.937 21 H 0.062 0.938 22 H 0.057 0.943 23 H 0.107 0.893 24 H 0.062 0.938 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.114 0.886 28 H 0.355 0.645 29 H 0.311 0.689 30 H 0.265 0.735 31 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.555 8.835 -0.893 10.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.094 4.094 3 C -0.166 4.166 4 C -0.093 4.093 5 C -0.164 4.164 6 C -0.148 4.148 7 C -0.018 4.018 8 C 0.129 3.871 9 H 0.064 0.936 10 N -0.379 5.379 11 C -0.581 4.581 12 H 0.074 0.926 13 C -0.137 4.137 14 N -0.533 5.533 15 Si 0.725 3.275 16 H -0.205 1.205 17 H -0.199 1.199 18 H -0.211 1.211 19 C -0.131 4.131 20 H 0.081 0.919 21 H 0.081 0.919 22 H 0.076 0.924 23 H 0.125 0.875 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.132 0.868 28 H 0.171 0.829 29 H 0.121 0.879 30 H 0.075 0.925 31 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.319 9.207 -1.518 10.741 hybrid contribution 0.098 -1.087 1.911 2.201 sum -5.221 8.120 0.394 9.662 Atomic orbital electron populations 1.20708 0.92186 1.01952 1.01553 1.19804 0.95285 0.93475 1.00877 1.20576 0.93388 0.96720 1.05938 1.19741 0.93742 0.94864 1.00935 1.20707 0.99709 0.94444 1.01540 1.20877 0.99463 0.91528 1.02938 1.20443 0.93649 0.96177 0.91531 1.18011 0.92675 0.85452 0.91006 0.93626 1.59533 1.05634 1.18976 1.53791 1.21833 1.35533 1.06020 0.94754 0.92610 1.25031 0.94458 0.96823 0.97401 1.69752 1.36034 1.16279 1.31255 0.86514 0.78581 0.77999 0.84456 1.20526 1.19865 1.21125 1.20782 0.94206 0.96616 1.01496 0.91860 0.91920 0.92384 0.87473 0.91889 0.92329 0.91926 0.86823 0.82912 0.87948 0.92478 0.86656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.48 10.01 36.01 0.36 -1.12 16 2 C -0.09 -1.68 5.88 -104.62 -0.62 -2.29 16 3 C -0.15 -2.52 9.36 -39.58 -0.37 -2.89 16 4 C -0.09 -1.64 5.88 -104.63 -0.62 -2.25 16 5 C -0.11 -1.46 10.01 36.01 0.36 -1.10 16 6 C -0.13 -2.66 9.32 -39.59 -0.37 -3.03 16 7 C -0.02 -0.39 4.89 -104.62 -0.51 -0.91 16 8 C 0.24 6.09 2.95 -70.02 -0.21 5.88 16 9 H 0.05 1.27 8.00 -51.93 -0.42 0.86 16 10 N -0.85 -20.72 9.01 -6.65 -0.06 -20.78 16 11 C -0.54 -14.81 8.70 -34.44 -0.30 -15.11 16 12 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 13 C 0.07 1.77 5.38 -17.82 -0.10 1.68 16 14 N -0.89 -24.83 11.54 55.43 0.64 -24.19 16 15 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 18 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 19 C -0.11 -2.32 8.95 -39.58 -0.35 -2.67 16 20 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 21 H 0.06 0.84 8.09 -51.93 -0.42 0.42 16 22 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 23 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 26 H 0.06 0.82 8.08 -51.93 -0.42 0.40 16 27 H 0.11 2.26 8.04 -52.48 -0.42 1.84 16 28 H 0.35 9.19 7.08 -39.29 -0.28 8.91 16 29 H 0.31 7.19 7.33 -39.29 -0.29 6.90 16 30 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.12 2.33 6.65 -52.48 -0.35 1.99 16 LS Contribution 262.60 15.07 3.96 3.96 Total: -1.00 -28.17 262.60 -7.44 -35.62 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -4.24 Total: 13.08 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: -2.72 Total: -23.82 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: 0.58 Total: -44.97 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -28.17 -7.44 -35.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084332743.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.704 kcal (2) G-P(sol) polarization free energy of solvation -28.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds