Wall clock time and date at job start Mon Mar 30 2020 02:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38262 * 120.00038 * 2 1 4 4 C 1.38205 * 120.00475 * 179.97438 * 3 2 1 5 5 C 1.38253 * 119.99884 * 0.02562 * 4 3 2 6 6 C 1.38220 * 120.00046 * 359.94758 * 5 4 3 7 7 C 1.38208 * 120.00408 * 179.97438 * 2 1 3 8 8 C 1.50701 * 119.99804 * 0.02562 * 7 2 1 9 9 C 1.52999 * 109.47402 * 85.02067 * 8 7 2 10 10 N 1.46499 * 109.47525 * 179.97438 * 9 8 7 11 11 C 1.36936 * 120.00142 * 179.97438 * 10 9 8 12 12 H 1.07997 * 119.99844 * 359.97438 * 11 10 9 13 13 C 1.38812 * 119.99804 * 179.97438 * 11 10 9 14 14 N 1.31621 * 120.00227 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 119.99994 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.47097 * 0.02562 * 15 13 11 17 17 H 1.48507 * 109.47091 * 120.00160 * 15 13 11 18 18 H 1.48494 * 109.47676 * 240.00447 * 15 13 11 19 19 H 1.08997 * 109.47001 * 270.01980 * 1 2 3 20 20 H 1.08997 * 109.47350 * 30.02356 * 1 2 3 21 21 H 1.08998 * 109.46705 * 150.02574 * 1 2 3 22 22 H 1.08000 * 119.99741 * 359.97438 * 3 2 1 23 23 H 1.08005 * 120.00151 * 179.97438 * 4 3 2 24 24 H 1.08002 * 120.00347 * 179.97438 * 5 4 3 25 25 H 1.08000 * 119.99660 * 180.32192 * 6 5 4 26 26 H 1.09003 * 109.47025 * 205.01748 * 8 7 2 27 27 H 1.08991 * 109.47184 * 325.01693 * 8 7 2 28 28 H 1.08997 * 109.46738 * 300.00295 * 9 8 7 29 29 H 1.08999 * 109.46965 * 59.99689 * 9 8 7 30 30 H 0.97007 * 119.99755 * 359.97438 * 10 9 8 31 31 H 0.96991 * 120.00290 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5803 1.1975 0.0005 5 6 4.2717 0.0002 0.0005 6 6 3.5806 -1.1969 0.0011 7 6 2.1981 -1.1969 0.0005 8 6 1.4446 -2.5020 0.0005 9 6 1.0817 -2.8815 -1.4365 10 7 0.3498 -4.1505 -1.4366 11 6 -0.0815 -4.6921 -2.6181 12 1 0.1175 -4.1834 -3.5497 13 6 -0.7746 -5.8948 -2.6181 14 7 -1.0175 -6.5144 -1.4826 15 14 -1.3637 -6.6332 -4.2296 16 1 -0.9670 -5.7480 -5.3541 17 1 -0.7493 -7.9726 -4.4142 18 1 -2.8423 -6.7664 -4.2019 19 1 -0.3633 0.0004 1.0276 20 1 -0.3634 0.8897 -0.5142 21 1 -0.3633 -0.8902 -0.5134 22 1 1.6582 2.1327 -0.0004 23 1 4.1203 2.1329 0.0001 24 1 5.3517 0.0002 0.0005 25 1 4.1207 -2.1321 0.0064 26 1 2.0693 -3.2822 0.4356 27 1 0.5336 -2.3956 0.5893 28 1 0.4571 -2.1013 -1.8716 29 1 1.9929 -2.9879 -2.0253 30 1 0.1708 -4.6072 -0.5997 31 1 -1.5015 -7.3550 -1.4826 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086763030.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:22 Heat of formation + Delta-G solvation = 19.088206 kcal Electronic energy + Delta-G solvation = -12605.486988 eV Core-core repulsion = 10465.362136 eV Total energy + Delta-G solvation = -2140.124852 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.40261 -35.23160 -33.06212 -32.12466 -30.58270 -27.74271 -26.54277 -23.88054 -21.99785 -21.42041 -20.19813 -17.10972 -16.08717 -15.54374 -14.90647 -14.53846 -13.77706 -13.44867 -13.32356 -13.02493 -12.95858 -12.43722 -11.96050 -11.92165 -11.15714 -11.09049 -10.87403 -10.83336 -10.55289 -10.47797 -10.01373 -9.68766 -8.84837 -8.62117 -8.33083 -6.89403 -5.74276 -3.02890 1.52816 1.55710 3.45102 3.50672 3.53079 3.91858 4.61760 4.97874 5.00918 5.13660 5.18635 5.48747 5.53452 5.61261 5.78379 5.82640 5.91671 5.97421 6.01951 6.10602 6.32211 6.36496 6.40237 6.61826 6.67130 6.78972 6.90278 7.02995 7.20673 7.73210 8.44804 9.55854 10.13798 10.48950 11.48879 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.058436 B = 0.006258 C = 0.006105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.044535 B = 4473.148664 C = 4585.503842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.081 4.081 3 C -0.123 4.123 4 C -0.130 4.130 5 C -0.128 4.128 6 C -0.114 4.114 7 C -0.066 4.066 8 C -0.093 4.093 9 C 0.160 3.840 10 N -0.734 5.734 11 C -0.238 4.238 12 H 0.071 0.929 13 C -0.015 4.015 14 N -0.934 5.934 15 Si 0.907 3.093 16 H -0.280 1.280 17 H -0.291 1.291 18 H -0.291 1.291 19 H 0.067 0.933 20 H 0.062 0.938 21 H 0.081 0.919 22 H 0.117 0.883 23 H 0.116 0.884 24 H 0.117 0.883 25 H 0.121 0.879 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.021 0.979 29 H 0.019 0.981 30 H 0.384 0.616 31 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.108 13.926 4.349 16.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.081 4.081 3 C -0.141 4.141 4 C -0.148 4.148 5 C -0.146 4.146 6 C -0.132 4.132 7 C -0.067 4.067 8 C -0.130 4.130 9 C 0.033 3.967 10 N -0.378 5.378 11 C -0.369 4.369 12 H 0.089 0.911 13 C -0.211 4.211 14 N -0.583 5.583 15 Si 0.738 3.262 16 H -0.206 1.206 17 H -0.219 1.219 18 H -0.218 1.218 19 H 0.086 0.914 20 H 0.081 0.919 21 H 0.100 0.900 22 H 0.135 0.865 23 H 0.134 0.866 24 H 0.135 0.865 25 H 0.139 0.861 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.039 0.961 29 H 0.037 0.963 30 H 0.217 0.783 31 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.070 13.903 4.161 16.143 hybrid contribution -0.300 -0.582 -0.600 0.888 sum 6.771 13.321 3.561 15.361 Atomic orbital electron populations 1.20921 0.91210 1.03541 1.02263 1.19834 0.96202 0.92544 0.99494 1.20982 0.94225 0.97295 1.01599 1.21027 0.94304 0.97764 1.01700 1.21067 0.99514 0.92620 1.01382 1.21101 0.93772 0.98108 1.00235 1.19864 0.93618 0.94894 0.98307 1.20832 0.99714 0.93021 0.99482 1.20601 0.94735 0.89112 0.92266 1.42392 1.66462 1.21887 1.07099 1.19290 1.28361 1.02640 0.86587 0.91143 1.24741 1.01511 0.97924 0.96908 1.69670 1.46329 1.18191 1.24152 0.86112 0.78190 0.78940 0.82949 1.20552 1.21858 1.21848 0.91392 0.91928 0.90018 0.86488 0.86618 0.86506 0.86069 0.91044 0.90743 0.96103 0.96336 0.78298 0.93574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.63 9.22 36.00 0.33 -1.30 16 2 C -0.08 -1.16 5.88 -104.63 -0.62 -1.78 16 3 C -0.12 -1.56 9.70 -39.58 -0.38 -1.94 16 4 C -0.13 -1.55 10.05 -39.59 -0.40 -1.95 16 5 C -0.13 -1.59 10.05 -39.58 -0.40 -1.99 16 6 C -0.11 -1.62 9.68 -39.58 -0.38 -2.01 16 7 C -0.07 -1.03 5.13 -104.63 -0.54 -1.57 16 8 C -0.09 -1.61 4.76 -27.88 -0.13 -1.74 16 9 C 0.16 3.39 6.05 -4.04 -0.02 3.37 16 10 N -0.73 -19.19 5.60 -59.91 -0.34 -19.53 16 11 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 12 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 13 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 14 N -0.93 -28.70 13.06 55.49 0.72 -27.98 16 15 Si 0.91 22.74 29.55 -169.99 -5.02 17.72 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 18 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 19 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 20 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 21 H 0.08 1.25 5.43 -51.93 -0.28 0.97 16 22 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 23 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 24 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 25 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 26 H 0.07 1.23 8.05 -51.93 -0.42 0.81 16 27 H 0.07 1.27 6.99 -51.93 -0.36 0.91 16 28 H 0.02 0.45 6.91 -51.93 -0.36 0.09 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.38 10.43 7.67 -40.82 -0.31 10.11 16 31 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 263.33 15.07 3.97 3.97 Total: -1.00 -31.09 263.33 -7.69 -38.78 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -4.24 Total: 5.47 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -2.79 Total: -18.43 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: 0.39 Total: -47.50 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -31.09 -7.69 -38.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086763030.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.870 kcal (2) G-P(sol) polarization free energy of solvation -31.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds