Wall clock time and date at job start Mon Mar 30 2020 02:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38262 * 120.00038 * 2 1 4 4 C 1.38205 * 120.00475 * 179.97438 * 3 2 1 5 5 C 1.38253 * 119.99884 * 0.02562 * 4 3 2 6 6 C 1.38220 * 120.00046 * 359.94758 * 5 4 3 7 7 C 1.38208 * 120.00408 * 179.97438 * 2 1 3 8 8 C 1.50701 * 119.99804 * 0.02562 * 7 2 1 9 9 C 1.52999 * 109.47402 * 85.02067 * 8 7 2 10 10 N 1.46499 * 109.47525 * 179.97438 * 9 8 7 11 11 C 1.36936 * 120.00142 * 179.97438 * 10 9 8 12 12 H 1.07997 * 119.99844 * 359.97438 * 11 10 9 13 13 C 1.38812 * 119.99804 * 179.97438 * 11 10 9 14 14 N 1.31621 * 120.00227 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 119.99994 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.47097 * 0.02562 * 15 13 11 17 17 H 1.48507 * 109.47091 * 120.00160 * 15 13 11 18 18 H 1.48494 * 109.47676 * 240.00447 * 15 13 11 19 19 H 1.08997 * 109.47001 * 270.01980 * 1 2 3 20 20 H 1.08997 * 109.47350 * 30.02356 * 1 2 3 21 21 H 1.08998 * 109.46705 * 150.02574 * 1 2 3 22 22 H 1.08000 * 119.99741 * 359.97438 * 3 2 1 23 23 H 1.08005 * 120.00151 * 179.97438 * 4 3 2 24 24 H 1.08002 * 120.00347 * 179.97438 * 5 4 3 25 25 H 1.08000 * 119.99660 * 180.32192 * 6 5 4 26 26 H 1.09003 * 109.47025 * 205.01748 * 8 7 2 27 27 H 1.08991 * 109.47184 * 325.01693 * 8 7 2 28 28 H 1.08997 * 109.46738 * 300.00295 * 9 8 7 29 29 H 1.08999 * 109.46965 * 59.99689 * 9 8 7 30 30 H 0.97007 * 119.99755 * 359.97438 * 10 9 8 31 31 H 0.96991 * 120.00290 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5803 1.1975 0.0005 5 6 4.2717 0.0002 0.0005 6 6 3.5806 -1.1969 0.0011 7 6 2.1981 -1.1969 0.0005 8 6 1.4446 -2.5020 0.0005 9 6 1.0817 -2.8815 -1.4365 10 7 0.3498 -4.1505 -1.4366 11 6 -0.0815 -4.6921 -2.6181 12 1 0.1175 -4.1834 -3.5497 13 6 -0.7746 -5.8948 -2.6181 14 7 -1.0175 -6.5144 -1.4826 15 14 -1.3637 -6.6332 -4.2296 16 1 -0.9670 -5.7480 -5.3541 17 1 -0.7493 -7.9726 -4.4142 18 1 -2.8423 -6.7664 -4.2019 19 1 -0.3633 0.0004 1.0276 20 1 -0.3634 0.8897 -0.5142 21 1 -0.3633 -0.8902 -0.5134 22 1 1.6582 2.1327 -0.0004 23 1 4.1203 2.1329 0.0001 24 1 5.3517 0.0002 0.0005 25 1 4.1207 -2.1321 0.0064 26 1 2.0693 -3.2822 0.4356 27 1 0.5336 -2.3956 0.5893 28 1 0.4571 -2.1013 -1.8716 29 1 1.9929 -2.9879 -2.0253 30 1 0.1708 -4.6072 -0.5997 31 1 -1.5015 -7.3550 -1.4826 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086763030.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:22 Heat of formation + Delta-G solvation = 0.935127 kcal Electronic energy + Delta-G solvation = -12606.274165 eV Core-core repulsion = 10465.362136 eV Total energy + Delta-G solvation = -2140.912029 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.47060 -37.00749 -34.62351 -33.36365 -32.30787 -29.23080 -27.68757 -25.75881 -23.49634 -22.70824 -21.38454 -19.20016 -17.16610 -16.77261 -16.66939 -15.81980 -15.47737 -15.10847 -14.92038 -14.41012 -13.97650 -13.73522 -13.15732 -13.05147 -12.95797 -12.88467 -12.42376 -12.40362 -12.05485 -11.95182 -11.73195 -11.55630 -10.96977 -9.65161 -9.40872 -9.04167 -7.97670 -5.27736 0.49113 0.53485 1.46580 1.47799 1.58213 2.54352 2.89021 3.35850 3.75101 3.94864 4.11520 4.20390 4.33003 4.38265 4.44172 4.51803 4.68463 4.72513 4.81933 4.88326 5.02749 5.13833 5.17011 5.28972 5.42653 5.46489 5.64892 5.66606 5.85151 6.19182 6.25008 7.30640 8.04272 8.29723 9.26209 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.058436 B = 0.006258 C = 0.006105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.044535 B = 4473.148664 C = 4585.503842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.095 4.095 3 C -0.126 4.126 4 C -0.125 4.125 5 C -0.130 4.130 6 C -0.128 4.128 7 C -0.092 4.092 8 C -0.077 4.077 9 C 0.164 3.836 10 N -0.746 5.746 11 C -0.250 4.250 12 H 0.073 0.927 13 C -0.074 4.074 14 N -0.970 5.970 15 Si 0.976 3.024 16 H -0.267 1.267 17 H -0.291 1.291 18 H -0.290 1.290 19 H 0.077 0.923 20 H 0.080 0.920 21 H 0.054 0.946 22 H 0.142 0.858 23 H 0.148 0.852 24 H 0.143 0.857 25 H 0.123 0.877 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.021 0.979 29 H 0.013 0.987 30 H 0.375 0.625 31 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.903 15.693 3.848 17.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.095 4.095 3 C -0.144 4.144 4 C -0.143 4.143 5 C -0.148 4.148 6 C -0.146 4.146 7 C -0.092 4.092 8 C -0.115 4.115 9 C 0.038 3.962 10 N -0.389 5.389 11 C -0.381 4.381 12 H 0.091 0.909 13 C -0.266 4.266 14 N -0.620 5.620 15 Si 0.805 3.195 16 H -0.191 1.191 17 H -0.218 1.218 18 H -0.217 1.217 19 H 0.096 0.904 20 H 0.099 0.901 21 H 0.073 0.927 22 H 0.160 0.840 23 H 0.166 0.834 24 H 0.161 0.839 25 H 0.141 0.859 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.038 0.962 29 H 0.031 0.969 30 H 0.206 0.794 31 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.886 15.705 3.652 17.949 hybrid contribution -0.482 -1.030 -0.420 1.212 sum 7.403 14.675 3.232 16.752 Atomic orbital electron populations 1.20892 0.90949 1.03056 1.02768 1.20024 0.96661 0.92919 0.99870 1.21307 0.94894 0.97499 1.00717 1.21460 0.94224 0.98892 0.99688 1.21401 1.00940 0.92071 1.00348 1.21262 0.93418 0.99276 1.00662 1.19759 0.94244 0.94185 1.01020 1.20590 0.99834 0.94369 0.96669 1.20670 0.93616 0.86993 0.94931 1.42594 1.66895 1.23359 1.06070 1.19670 1.28016 1.02900 0.87537 0.90861 1.25605 1.02111 0.98512 1.00394 1.69824 1.47337 1.18538 1.26337 0.85033 0.77357 0.77939 0.79176 1.19135 1.21758 1.21681 0.90435 0.90116 0.92677 0.84010 0.83403 0.83926 0.85941 0.91473 0.91042 0.96155 0.96928 0.79354 0.93825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.10 9.22 71.23 0.66 -2.44 16 2 C -0.09 -2.60 5.88 -19.87 -0.12 -2.72 16 3 C -0.13 -2.84 9.70 22.27 0.22 -2.63 16 4 C -0.12 -2.54 10.05 22.27 0.22 -2.32 16 5 C -0.13 -2.89 10.05 22.27 0.22 -2.67 16 6 C -0.13 -3.52 9.68 22.27 0.22 -3.30 16 7 C -0.09 -2.81 5.13 -19.87 -0.10 -2.91 16 8 C -0.08 -2.73 4.76 29.85 0.14 -2.59 16 9 C 0.16 7.10 6.05 86.38 0.52 7.62 16 10 N -0.75 -39.92 5.60 -343.46 -1.92 -41.85 16 11 C -0.25 -14.51 9.99 84.03 0.84 -13.67 16 12 H 0.07 4.12 7.83 -2.91 -0.02 4.10 16 13 C -0.07 -4.35 5.50 84.86 0.47 -3.89 16 14 N -0.97 -60.48 13.06 21.65 0.28 -60.20 16 15 Si 0.98 46.91 29.55 68.60 2.03 48.94 16 16 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 17 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 18 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 19 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 20 H 0.08 1.73 8.09 -2.39 -0.02 1.71 16 21 H 0.05 1.70 5.43 -2.39 -0.01 1.69 16 22 H 0.14 2.43 8.06 -2.91 -0.02 2.40 16 23 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 24 H 0.14 2.38 8.06 -2.91 -0.02 2.35 16 25 H 0.12 3.20 8.06 -2.91 -0.02 3.18 16 26 H 0.07 2.38 8.05 -2.39 -0.02 2.36 16 27 H 0.07 2.52 6.99 -2.39 -0.02 2.51 16 28 H 0.02 0.89 6.91 -2.39 -0.02 0.88 16 29 H 0.01 0.56 8.14 -2.39 -0.02 0.55 16 30 H 0.37 21.03 7.67 -92.70 -0.71 20.32 16 31 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -66.06 263.33 4.07 -61.99 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: 0.40 Total: 22.63 kcal Atomic # 6 Polarization: -34.80 SS G_CDS: 3.29 Total: -31.51 kcal Atomic # 7 Polarization: -100.41 SS G_CDS: -1.64 Total: -102.05 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.94 kcal Total: -66.06 4.07 -61.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086763030.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.925 kcal (2) G-P(sol) polarization free energy of solvation -66.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds