Wall clock time and date at job start Mon Mar 30 2020 02:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47315 * 2 1 4 4 H 1.08992 * 109.46877 * 305.67261 * 3 2 1 5 5 C 1.50699 * 109.46559 * 65.67215 * 3 2 1 6 6 H 1.07992 * 120.00667 * 55.02704 * 5 3 2 7 7 C 1.37881 * 119.99513 * 235.02041 * 5 3 2 8 8 N 1.31514 * 120.00053 * 184.85807 * 7 5 3 9 9 Si 1.86799 * 120.00184 * 4.86361 * 7 5 3 10 10 H 1.48501 * 109.47363 * 84.69523 * 9 7 5 11 11 H 1.48498 * 109.47303 * 204.69501 * 9 7 5 12 12 H 1.48502 * 109.47207 * 324.69610 * 9 7 5 13 13 N 1.46497 * 109.47043 * 185.66675 * 3 2 1 14 14 C 1.36245 * 126.49861 * 299.68888 * 13 3 2 15 15 C 1.35383 * 107.07414 * 179.90255 * 14 13 3 16 16 N 1.33264 * 108.40934 * 0.36748 * 15 14 13 17 17 C 1.31668 * 109.22621 * 359.77112 * 16 15 14 18 18 C 1.43198 * 125.86072 * 180.02562 * 17 16 15 19 19 N 4.87894 * 110.63770 * 316.58952 * 2 1 3 20 20 H 1.09009 * 109.46585 * 304.91384 * 1 2 3 21 21 H 1.08993 * 109.47725 * 64.91018 * 1 2 3 22 22 H 1.09000 * 109.46849 * 184.91679 * 1 2 3 23 23 H 1.09002 * 109.46733 * 240.00418 * 2 1 3 24 24 H 1.09005 * 109.47335 * 120.00468 * 2 1 3 25 25 H 0.97000 * 120.00572 * 180.02562 * 8 7 5 26 26 H 1.08000 * 126.46386 * 0.04427 * 14 13 3 27 27 H 1.08002 * 125.79025 * 180.10646 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5961 1.9848 -0.8348 5 6 1.6556 2.1111 1.2947 6 1 1.9383 1.6660 2.2371 7 6 0.9430 3.2913 1.2759 8 7 0.6900 3.9247 2.4004 9 14 0.3367 3.9907 -0.3466 10 1 -0.9597 3.3605 -0.7038 11 1 0.1540 5.4586 -0.2156 12 1 1.3338 3.7090 -1.4105 13 7 3.4986 1.4447 -0.1364 14 6 4.3932 0.8724 0.7171 15 6 5.6283 1.1082 0.2152 16 7 5.4984 1.8116 -0.9092 17 6 4.2202 2.0265 -1.1410 18 6 3.6790 2.7457 -2.2547 19 7 3.2496 3.3169 -3.1377 20 1 -0.3633 0.5882 0.8428 21 1 -0.3634 0.4357 -0.9306 22 1 -0.3633 -1.0239 0.0881 23 1 1.8932 -0.5138 -0.8901 24 1 1.8933 -0.5139 0.8900 25 1 0.1883 4.7548 2.3874 26 1 4.1608 0.3307 1.6221 27 1 6.5607 0.7850 0.6541 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087338547.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:12 Heat of formation + Delta-G solvation = 66.132549 kcal Electronic energy + Delta-G solvation = -13060.842648 eV Core-core repulsion = 10819.217448 eV Total energy + Delta-G solvation = -2241.625200 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.98176 -37.72601 -37.35841 -34.36622 -32.84075 -30.85486 -29.01399 -25.70458 -24.16124 -22.94939 -21.42791 -19.33900 -19.22818 -17.18546 -16.63455 -16.09045 -15.58944 -15.20400 -14.91351 -14.71340 -14.29363 -14.19017 -14.01862 -13.77552 -13.27496 -12.88228 -12.73197 -12.42080 -11.96863 -11.84678 -11.38457 -11.07532 -10.96695 -10.43008 -9.33693 -8.53579 -6.62638 0.41678 1.11804 1.20350 1.26129 1.27852 1.79413 1.94043 2.11309 2.50646 2.64853 3.09727 3.87968 4.07315 4.30571 4.42218 4.52905 4.65576 4.74922 4.92564 5.11125 5.21690 5.26370 5.47279 5.56168 5.78968 5.98513 6.10040 6.30781 6.51199 6.98274 7.06630 8.59514 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.026126 B = 0.015358 C = 0.013431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.479380 B = 1822.755927 C = 2084.172021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.109 4.109 3 C 0.202 3.798 4 H 0.056 0.944 5 C -0.510 4.510 6 H 0.067 0.933 7 C 0.049 3.951 8 N -0.911 5.911 9 Si 0.906 3.094 10 H -0.251 1.251 11 H -0.291 1.291 12 H -0.259 1.259 13 N -0.397 5.397 14 C 0.010 3.990 15 C -0.036 4.036 16 N -0.461 5.461 17 C 0.184 3.816 18 C 0.317 3.683 19 N -0.424 5.424 20 H 0.052 0.948 21 H 0.042 0.958 22 H 0.078 0.922 23 H 0.060 0.940 24 H 0.077 0.923 25 H 0.273 0.727 26 H 0.204 0.796 27 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.907 -8.493 -2.436 9.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.148 4.148 3 C 0.104 3.896 4 H 0.074 0.926 5 C -0.548 4.548 6 H 0.085 0.915 7 C -0.155 4.155 8 N -0.547 5.547 9 Si 0.731 3.269 10 H -0.176 1.176 11 H -0.217 1.217 12 H -0.184 1.184 13 N -0.076 5.076 14 C -0.133 4.133 15 C -0.190 4.190 16 N -0.184 5.184 17 C -0.071 4.071 18 C 0.000 4.000 19 N -0.104 5.104 20 H 0.071 0.929 21 H 0.061 0.939 22 H 0.097 0.903 23 H 0.079 0.921 24 H 0.096 0.904 25 H 0.082 0.918 26 H 0.221 0.779 27 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 2.546 -7.156 -4.236 8.697 hybrid contribution -0.924 0.510 0.418 1.135 sum 1.622 -6.646 -3.818 7.835 Atomic orbital electron populations 1.21650 0.94401 1.02370 1.01448 1.21708 0.97260 0.93744 1.02045 1.20137 0.73954 0.97751 0.97793 0.92585 1.21021 1.34836 1.07119 0.91816 0.91512 1.25640 0.95460 0.96153 0.98255 1.69948 1.39297 1.17317 1.28179 0.86394 0.80679 0.78174 0.81658 1.17554 1.21733 1.18355 1.47202 1.09940 1.34666 1.15832 1.23492 0.89068 1.02410 0.98286 1.22965 0.98836 1.03415 0.93799 1.70127 1.13689 1.16070 1.18496 1.17244 0.87880 1.09288 0.92639 1.23629 0.92847 0.92104 0.91393 1.81155 1.07104 1.10637 1.11502 0.92919 0.93928 0.90304 0.92136 0.90436 0.91784 0.77927 0.76908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.39 9.81 71.98 0.71 -3.68 15 2 C -0.11 -3.53 5.39 30.59 0.16 -3.37 15 3 C 0.20 8.13 2.37 44.25 0.10 8.24 15 4 H 0.06 2.41 3.72 -2.39 -0.01 2.40 15 5 C -0.51 -24.38 7.77 25.60 0.20 -24.18 15 6 H 0.07 3.44 8.06 -2.91 -0.02 3.42 15 7 C 0.05 2.53 5.47 84.66 0.46 2.99 15 8 N -0.91 -50.93 13.96 21.45 0.30 -50.63 15 9 Si 0.91 41.26 27.25 68.60 1.87 43.13 15 10 H -0.25 -10.74 7.11 99.48 0.71 -10.03 15 11 H -0.29 -13.67 7.11 99.48 0.71 -12.96 15 12 H -0.26 -11.77 5.06 99.48 0.50 -11.27 15 13 N -0.40 -15.20 2.63 -501.85 -1.32 -16.52 15 14 C 0.01 0.31 10.83 83.35 0.90 1.21 15 15 C -0.04 -1.06 11.84 83.82 0.99 -0.07 15 16 N -0.46 -17.17 11.27 -193.29 -2.18 -19.35 15 17 C 0.18 7.38 7.66 135.08 1.03 8.41 15 18 C 0.32 13.21 14.19 88.33 1.25 14.47 15 19 N -0.42 -18.05 18.15 19.00 0.34 -17.71 15 20 H 0.05 1.90 7.26 -2.38 -0.02 1.88 15 21 H 0.04 1.30 8.14 -2.39 -0.02 1.28 15 22 H 0.08 1.95 8.14 -2.39 -0.02 1.93 15 23 H 0.06 1.77 8.14 -2.39 -0.02 1.75 15 24 H 0.08 2.33 8.11 -2.38 -0.02 2.31 15 25 H 0.27 14.51 8.31 -92.71 -0.77 13.74 15 26 H 0.20 5.13 8.06 -2.91 -0.02 5.11 15 27 H 0.21 4.36 8.06 -2.91 -0.02 4.34 15 Total: -1.00 -58.96 243.84 5.81 -53.15 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: 0.97 Total: 3.91 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: 5.82 Total: 4.02 kcal Atomic # 7 Polarization: -101.36 SS G_CDS: -2.85 Total: -104.21 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 1.87 Total: 43.13 kcal Total: -58.96 5.81 -53.15 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087338547.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.283 kcal (2) G-P(sol) polarization free energy of solvation -58.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds