Wall clock time and date at job start Mon Mar 30 2020 02:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38251 * 120.00204 * 2 1 4 4 C 1.38217 * 120.00234 * 179.97438 * 3 2 1 5 5 C 1.38256 * 119.99758 * 359.74751 * 4 3 2 6 6 C 1.38219 * 119.99950 * 0.50408 * 5 4 3 7 7 C 1.50696 * 120.00097 * 179.76615 * 6 5 4 8 8 H 1.08994 * 109.47290 * 159.72695 * 7 6 5 9 9 C 1.53006 * 109.47149 * 279.73360 * 7 6 5 10 10 N 1.46505 * 109.46982 * 39.72764 * 7 6 5 11 11 C 1.36931 * 119.99788 * 155.00096 * 10 7 6 12 12 H 1.08002 * 120.00438 * 0.02562 * 11 10 7 13 13 C 1.38817 * 119.99680 * 179.72358 * 11 10 7 14 14 N 1.31614 * 119.99888 * 0.27479 * 13 11 10 15 15 Si 1.86803 * 119.99862 * 180.27671 * 13 11 10 16 16 H 1.48498 * 109.47174 * 90.00121 * 15 13 11 17 17 H 1.48501 * 109.47062 * 210.00072 * 15 13 11 18 18 H 1.48504 * 109.46913 * 329.99871 * 15 13 11 19 19 C 1.38217 * 119.99881 * 179.97438 * 2 1 3 20 20 H 1.08997 * 109.47725 * 270.02409 * 1 2 3 21 21 H 1.09005 * 109.46629 * 30.02864 * 1 2 3 22 22 H 1.09001 * 109.46783 * 150.02290 * 1 2 3 23 23 H 1.08009 * 120.00058 * 359.97438 * 3 2 1 24 24 H 1.07998 * 119.99629 * 180.02562 * 4 3 2 25 25 H 1.07999 * 120.00290 * 180.27431 * 5 4 3 26 26 H 1.08994 * 109.47567 * 59.99505 * 9 7 6 27 27 H 1.08991 * 109.47054 * 180.02562 * 9 7 6 28 28 H 1.09004 * 109.46242 * 299.99510 * 9 7 6 29 29 H 0.97000 * 119.99792 * 334.99891 * 10 7 6 30 30 H 0.97005 * 119.99715 * 179.97438 * 14 13 11 31 31 H 1.08005 * 120.00005 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 0.0063 6 6 3.5806 -1.1971 0.0011 7 6 4.3340 -2.5022 0.0021 8 1 3.6793 -3.2994 0.3538 9 6 4.8066 -2.8194 -1.4182 10 7 5.4943 -2.3955 0.8903 11 6 6.0263 -3.5215 1.4597 12 1 5.5910 -4.4882 1.2537 13 6 7.1292 -3.4211 2.2967 14 7 7.6600 -2.2431 2.5473 15 14 7.8598 -4.9579 3.0673 16 1 8.9037 -5.5136 2.1692 17 1 8.4668 -4.6137 4.3782 18 1 6.7898 -5.9680 3.2673 19 6 2.1981 -1.1970 0.0005 20 1 -0.3634 0.0004 1.0276 21 1 -0.3633 0.8898 -0.5143 22 1 -0.3633 -0.8902 -0.5135 23 1 1.6583 2.1327 -0.0004 24 1 4.1204 2.1326 0.0010 25 1 5.3517 -0.0001 0.0112 26 1 5.4613 -2.0221 -1.7699 27 1 5.3511 -3.7635 -1.4175 28 1 3.9433 -2.8987 -2.0790 29 1 5.8855 -1.5274 1.0750 30 1 8.4304 -2.1729 3.1326 31 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088162229.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:43 Heat of formation + Delta-G solvation = 4.615005 kcal Electronic energy + Delta-G solvation = -12830.635221 eV Core-core repulsion = 10689.882763 eV Total energy + Delta-G solvation = -2140.752457 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.43441 -37.21374 -34.36990 -33.14993 -31.48999 -29.70003 -27.68060 -26.04401 -23.90253 -22.90991 -20.62959 -19.37916 -17.41364 -16.77373 -16.19695 -15.85192 -15.07730 -15.00703 -14.69560 -14.14311 -14.00733 -13.76324 -13.32782 -12.95924 -12.85031 -12.75942 -12.62239 -12.40447 -12.12161 -11.98510 -11.59914 -11.45080 -11.01298 -9.63652 -9.40880 -9.04168 -7.95182 -5.24164 0.53251 0.55196 1.46331 1.48599 1.56884 2.55355 2.92253 3.38912 3.84364 3.97807 4.09271 4.13558 4.33122 4.46398 4.59519 4.65929 4.75629 4.83441 4.91009 4.98905 5.05539 5.11434 5.26343 5.34839 5.45298 5.48640 5.65973 5.74224 5.86743 6.21848 6.27088 7.32676 8.07388 8.32397 9.28764 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.048669 B = 0.007600 C = 0.007343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.177645 B = 3683.150442 C = 3812.320099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.091 4.091 3 C -0.132 4.132 4 C -0.121 4.121 5 C -0.136 4.136 6 C -0.084 4.084 7 C 0.200 3.800 8 H 0.052 0.948 9 C -0.147 4.147 10 N -0.736 5.736 11 C -0.241 4.241 12 H 0.077 0.923 13 C -0.077 4.077 14 N -0.972 5.972 15 Si 0.975 3.025 16 H -0.286 1.286 17 H -0.296 1.296 18 H -0.269 1.269 19 C -0.129 4.129 20 H 0.075 0.925 21 H 0.082 0.918 22 H 0.073 0.927 23 H 0.148 0.852 24 H 0.137 0.863 25 H 0.100 0.900 26 H 0.039 0.961 27 H 0.044 0.956 28 H 0.068 0.932 29 H 0.374 0.626 30 H 0.251 0.749 31 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.391 4.888 -6.646 15.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.091 4.091 3 C -0.150 4.150 4 C -0.139 4.139 5 C -0.154 4.154 6 C -0.085 4.085 7 C 0.092 3.908 8 H 0.070 0.930 9 C -0.207 4.207 10 N -0.377 5.377 11 C -0.373 4.373 12 H 0.095 0.905 13 C -0.269 4.269 14 N -0.623 5.623 15 Si 0.804 3.196 16 H -0.213 1.213 17 H -0.222 1.222 18 H -0.193 1.193 19 C -0.148 4.148 20 H 0.094 0.906 21 H 0.101 0.899 22 H 0.092 0.908 23 H 0.166 0.834 24 H 0.154 0.846 25 H 0.118 0.882 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.207 0.793 30 H 0.060 0.940 31 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -13.384 4.691 -6.597 15.642 hybrid contribution 1.259 -0.467 0.638 1.487 sum -12.125 4.224 -5.959 14.155 Atomic orbital electron populations 1.20809 0.88779 1.03826 1.02997 1.20260 0.97702 0.92508 0.98674 1.21304 0.93692 0.98544 1.01450 1.21346 0.95213 0.97606 0.99707 1.21001 0.99522 0.93183 1.01713 1.20268 0.94588 0.95107 0.98515 1.19385 0.87913 0.92770 0.90687 0.93038 1.22242 1.00699 1.00643 0.97144 1.42743 1.33523 1.06626 1.54811 1.19671 1.08653 0.88395 1.20595 0.90474 1.25586 0.99741 0.99665 1.01949 1.69831 1.26017 1.23977 1.42448 0.85112 0.78338 0.78972 0.77180 1.21333 1.22235 1.19332 1.21082 0.92647 0.98906 1.02125 0.90614 0.89926 0.90799 0.83436 0.84555 0.88222 0.94172 0.93718 0.91285 0.79280 0.94032 0.85157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.91 10.01 71.24 0.71 -1.20 16 2 C -0.09 -2.39 5.88 -19.87 -0.12 -2.51 16 3 C -0.13 -3.41 9.70 22.27 0.22 -3.19 16 4 C -0.12 -3.66 10.05 22.27 0.22 -3.43 16 5 C -0.14 -5.09 9.06 22.27 0.20 -4.89 16 6 C -0.08 -3.17 4.96 -19.87 -0.10 -3.27 16 7 C 0.20 8.51 3.09 44.24 0.14 8.65 16 8 H 0.05 2.18 7.94 -2.39 -0.02 2.16 16 9 C -0.15 -5.59 9.47 71.98 0.68 -4.91 16 10 N -0.74 -38.99 5.07 -326.49 -1.66 -40.64 16 11 C -0.24 -13.81 9.93 84.04 0.83 -12.98 16 12 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 13 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 14 N -0.97 -61.05 13.06 21.65 0.28 -60.77 16 15 Si 0.98 47.02 29.55 68.60 2.03 49.05 16 16 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 17 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 18 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 19 C -0.13 -4.04 9.33 22.27 0.21 -3.84 16 20 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 21 H 0.08 1.15 8.09 -2.38 -0.02 1.13 16 22 H 0.07 1.18 8.09 -2.39 -0.02 1.16 16 23 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 24 H 0.14 3.46 8.06 -2.91 -0.02 3.43 16 25 H 0.10 4.14 6.90 -2.91 -0.02 4.12 16 26 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.37 21.19 6.05 -92.71 -0.56 20.63 16 30 H 0.25 15.23 8.31 -92.70 -0.77 14.46 16 31 H 0.13 3.60 8.04 -2.91 -0.02 3.58 16 Total: -1.00 -66.35 265.90 4.66 -61.69 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: 0.54 Total: 26.33 kcal Atomic # 6 Polarization: -39.13 SS G_CDS: 3.47 Total: -35.66 kcal Atomic # 7 Polarization: -100.03 SS G_CDS: -1.37 Total: -101.41 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -66.35 4.66 -61.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088162229.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.302 kcal (2) G-P(sol) polarization free energy of solvation -66.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds