Wall clock time and date at job start Mon Mar 30 2020 02:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38236 * 119.99772 * 2 1 4 4 C 1.38229 * 119.99925 * 180.24702 * 3 2 1 5 5 C 1.38240 * 120.00279 * 359.77495 * 4 3 2 6 6 C 1.38237 * 119.99387 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.99648 * 179.97438 * 6 5 4 8 8 C 1.38231 * 120.00088 * 179.78970 * 2 1 3 9 9 C 1.50696 * 119.99969 * 359.97438 * 8 2 1 10 10 H 1.09003 * 109.47322 * 118.00408 * 9 8 2 11 11 N 1.46899 * 109.47239 * 358.00186 * 9 8 2 12 12 C 1.50707 * 109.47374 * 238.00187 * 9 8 2 13 13 H 1.08005 * 119.99321 * 359.97438 * 12 9 8 14 14 C 1.37869 * 120.00229 * 180.02562 * 12 9 8 15 15 N 1.31516 * 120.00260 * 359.97438 * 14 12 9 16 16 Si 1.86800 * 120.00060 * 180.02562 * 14 12 9 17 17 H 1.48499 * 109.47314 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47356 * 120.00047 * 16 14 12 19 19 H 1.48507 * 109.47004 * 240.00053 * 16 14 12 20 20 H 1.09005 * 109.47149 * 255.46401 * 1 2 3 21 21 H 1.08994 * 109.47485 * 15.46354 * 1 2 3 22 22 H 1.09000 * 109.47099 * 135.46925 * 1 2 3 23 23 H 1.08001 * 119.99984 * 0.04776 * 3 2 1 24 24 H 1.08005 * 120.00229 * 179.79462 * 4 3 2 25 25 H 1.08001 * 120.00191 * 179.97438 * 5 4 3 26 26 H 1.08997 * 109.47504 * 269.98100 * 7 6 5 27 27 H 1.09005 * 109.47421 * 29.98231 * 7 6 5 28 28 H 1.09001 * 109.47298 * 149.97605 * 7 6 5 29 29 H 1.00899 * 111.00102 * 161.93199 * 11 9 8 30 30 H 1.00899 * 111.00168 * 285.88299 * 11 9 8 31 31 H 0.96997 * 120.00656 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1972 -0.0052 5 6 4.2717 0.0001 -0.0056 6 6 3.5805 -1.1971 -0.0015 7 6 4.3341 -2.5021 -0.0025 8 6 2.1982 -1.1971 0.0044 9 6 1.4447 -2.5022 0.0098 10 1 1.6806 -3.0616 -0.8955 11 7 0.0012 -2.2340 0.0576 12 6 1.8460 -3.3090 1.2177 13 1 2.5742 -2.9161 1.9119 14 6 1.2844 -4.5490 1.4361 15 7 0.3980 -5.0277 0.5906 16 14 1.7813 -5.5488 2.9338 17 1 2.7870 -4.7926 3.7224 18 1 0.5853 -5.8081 3.7749 19 1 2.3671 -6.8407 2.4944 20 1 -0.3634 -0.2579 0.9948 21 1 -0.3634 0.9904 -0.2740 22 1 -0.3633 -0.7326 -0.7207 23 1 1.6581 2.1325 0.0008 24 1 4.1204 2.1326 -0.0085 25 1 5.3517 0.0001 -0.0101 26 1 4.5116 -2.8184 -1.0304 27 1 5.2886 -2.3711 0.5073 28 1 3.7471 -3.2610 0.5149 29 1 -0.5269 -3.0444 -0.2296 30 1 -0.2793 -1.9268 0.9768 31 1 0.0025 -5.8999 0.7444 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095659838.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:25 Heat of formation + Delta-G solvation = 38.749286 kcal Electronic energy + Delta-G solvation = -13489.389519 eV Core-core repulsion = 11350.117235 eV Total energy + Delta-G solvation = -2139.272284 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.01718 -34.88915 -32.95909 -31.75412 -29.46958 -27.30026 -26.15852 -24.92169 -22.27167 -19.80120 -19.68909 -16.71299 -15.53440 -14.89138 -14.62047 -14.09766 -13.61816 -12.95216 -12.63232 -12.37663 -12.12775 -11.98599 -11.53123 -11.42672 -11.14482 -10.95646 -10.81525 -10.56016 -10.46830 -10.07471 -9.74679 -9.18759 -8.76090 -7.72673 -7.56175 -6.84402 -6.07444 -4.26343 2.22421 2.29194 3.17990 3.27711 3.32422 4.27605 4.63901 5.07197 5.59921 5.68670 5.78595 5.95994 6.15660 6.24825 6.48073 6.52494 6.54193 6.64946 6.69855 6.85038 7.00312 7.22744 7.24205 7.31441 7.49695 7.62457 7.69636 7.81575 7.99838 8.09181 8.67001 8.82446 9.00155 9.40126 10.83137 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.036718 B = 0.012158 C = 0.010080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.389325 B = 2302.483470 C = 2777.081056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.068 4.068 3 C -0.145 4.145 4 C -0.140 4.140 5 C -0.143 4.143 6 C -0.074 4.074 7 C -0.138 4.138 8 C -0.046 4.046 9 C 0.238 3.762 10 H 0.047 0.953 11 N -0.833 5.833 12 C -0.535 4.535 13 H 0.062 0.938 14 C 0.065 3.935 15 N -0.891 5.891 16 Si 0.893 3.107 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.283 1.283 20 H 0.055 0.945 21 H 0.014 0.986 22 H 0.138 0.862 23 H 0.106 0.894 24 H 0.105 0.895 25 H 0.106 0.894 26 H 0.053 0.947 27 H 0.043 0.957 28 H 0.118 0.882 29 H 0.338 0.662 30 H 0.326 0.674 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.515 6.103 -0.693 6.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.068 4.068 3 C -0.163 4.163 4 C -0.158 4.158 5 C -0.162 4.162 6 C -0.075 4.075 7 C -0.194 4.194 8 C -0.047 4.047 9 C 0.129 3.871 10 H 0.065 0.935 11 N -0.362 5.362 12 C -0.575 4.575 13 H 0.080 0.920 14 C -0.138 4.138 15 N -0.530 5.530 16 Si 0.721 3.279 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.209 1.209 20 H 0.074 0.926 21 H 0.033 0.967 22 H 0.155 0.845 23 H 0.124 0.876 24 H 0.123 0.877 25 H 0.124 0.876 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.136 0.864 29 H 0.152 0.848 30 H 0.138 0.862 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.549 6.481 -1.288 7.082 hybrid contribution 0.476 -1.219 1.628 2.089 sum 3.025 5.261 0.340 6.079 Atomic orbital electron populations 1.21670 0.90963 0.99968 1.04875 1.19937 0.96881 0.91859 0.98169 1.20933 0.94010 0.97216 1.04189 1.20819 0.94364 0.97034 1.03626 1.20847 0.98629 0.92478 1.04197 1.19728 0.93704 0.94821 0.99222 1.21304 0.99340 0.97094 1.01686 1.20274 0.92669 0.96154 0.95569 1.17930 0.85525 0.87105 0.96576 0.93483 1.60729 1.07150 1.37925 1.30350 1.21797 1.24690 1.01997 1.08990 0.91985 1.25022 0.94912 0.97378 0.96471 1.69803 1.28243 1.19019 1.35907 0.86509 0.78580 0.80043 0.82799 1.19628 1.20975 1.20880 0.92645 0.96743 0.84501 0.87619 0.87707 0.87586 0.92845 0.93816 0.86362 0.84758 0.86234 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.20 8.11 36.01 0.29 -1.91 16 2 C -0.07 -1.41 5.88 -104.63 -0.62 -2.02 16 3 C -0.15 -2.70 9.67 -39.59 -0.38 -3.08 16 4 C -0.14 -2.49 10.05 -39.58 -0.40 -2.89 16 5 C -0.14 -2.69 9.70 -39.58 -0.38 -3.07 16 6 C -0.07 -1.56 5.66 -104.62 -0.59 -2.16 16 7 C -0.14 -2.76 9.40 36.01 0.34 -2.42 16 8 C -0.05 -1.03 5.31 -104.63 -0.56 -1.58 16 9 C 0.24 5.72 2.53 -70.02 -0.18 5.55 16 10 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 11 N -0.83 -18.42 4.71 -6.65 -0.03 -18.45 16 12 C -0.54 -13.67 5.93 -34.44 -0.20 -13.87 16 13 H 0.06 1.64 6.90 -52.48 -0.36 1.27 16 14 C 0.07 1.67 5.39 -17.82 -0.10 1.58 16 15 N -0.89 -23.49 11.80 55.43 0.65 -22.83 16 16 Si 0.89 20.35 29.54 -169.99 -5.02 15.32 16 17 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H 0.05 1.03 6.56 -51.93 -0.34 0.69 16 21 H 0.01 0.23 7.96 -51.93 -0.41 -0.18 16 22 H 0.14 2.69 5.59 -63.17 -0.35 2.33 16 23 H 0.11 1.71 8.00 -52.49 -0.42 1.29 16 24 H 0.10 1.55 8.06 -52.48 -0.42 1.12 16 25 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 26 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.04 0.77 8.09 -51.93 -0.42 0.35 16 28 H 0.12 2.66 4.31 -51.93 -0.22 2.44 16 29 H 0.34 7.92 7.58 -39.29 -0.30 7.62 16 30 H 0.33 7.18 6.69 -39.29 -0.26 6.91 16 31 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 247.40 15.07 3.73 3.73 Total: -1.00 -25.75 247.40 -7.36 -33.12 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -3.92 Total: 14.99 kcal Atomic # 6 Polarization: -23.10 SS G_CDS: -2.77 Total: -25.88 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: 0.62 Total: -41.28 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -25.75 -7.36 -33.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095659838.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.867 kcal (2) G-P(sol) polarization free energy of solvation -25.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds