Wall clock time and date at job start Mon Mar 30 2020 02:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38236 * 119.99772 * 2 1 4 4 C 1.38229 * 119.99925 * 180.24702 * 3 2 1 5 5 C 1.38240 * 120.00279 * 359.77495 * 4 3 2 6 6 C 1.38237 * 119.99387 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.99648 * 179.97438 * 6 5 4 8 8 C 1.38231 * 120.00088 * 179.78970 * 2 1 3 9 9 C 1.50696 * 119.99969 * 359.97438 * 8 2 1 10 10 H 1.09003 * 109.47322 * 118.00408 * 9 8 2 11 11 N 1.46899 * 109.47239 * 358.00186 * 9 8 2 12 12 C 1.50707 * 109.47374 * 238.00187 * 9 8 2 13 13 H 1.08005 * 119.99321 * 359.97438 * 12 9 8 14 14 C 1.37869 * 120.00229 * 180.02562 * 12 9 8 15 15 N 1.31516 * 120.00260 * 359.97438 * 14 12 9 16 16 Si 1.86800 * 120.00060 * 180.02562 * 14 12 9 17 17 H 1.48499 * 109.47314 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47356 * 120.00047 * 16 14 12 19 19 H 1.48507 * 109.47004 * 240.00053 * 16 14 12 20 20 H 1.09005 * 109.47149 * 255.46401 * 1 2 3 21 21 H 1.08994 * 109.47485 * 15.46354 * 1 2 3 22 22 H 1.09000 * 109.47099 * 135.46925 * 1 2 3 23 23 H 1.08001 * 119.99984 * 0.04776 * 3 2 1 24 24 H 1.08005 * 120.00229 * 179.79462 * 4 3 2 25 25 H 1.08001 * 120.00191 * 179.97438 * 5 4 3 26 26 H 1.08997 * 109.47504 * 269.98100 * 7 6 5 27 27 H 1.09005 * 109.47421 * 29.98231 * 7 6 5 28 28 H 1.09001 * 109.47298 * 149.97605 * 7 6 5 29 29 H 1.00899 * 111.00102 * 161.93199 * 11 9 8 30 30 H 1.00899 * 111.00168 * 285.88299 * 11 9 8 31 31 H 0.96997 * 120.00656 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1972 -0.0052 5 6 4.2717 0.0001 -0.0056 6 6 3.5805 -1.1971 -0.0015 7 6 4.3341 -2.5021 -0.0025 8 6 2.1982 -1.1971 0.0044 9 6 1.4447 -2.5022 0.0098 10 1 1.6806 -3.0616 -0.8955 11 7 0.0012 -2.2340 0.0576 12 6 1.8460 -3.3090 1.2177 13 1 2.5742 -2.9161 1.9119 14 6 1.2844 -4.5490 1.4361 15 7 0.3980 -5.0277 0.5906 16 14 1.7813 -5.5488 2.9338 17 1 2.7870 -4.7926 3.7224 18 1 0.5853 -5.8081 3.7749 19 1 2.3671 -6.8407 2.4944 20 1 -0.3634 -0.2579 0.9948 21 1 -0.3634 0.9904 -0.2740 22 1 -0.3633 -0.7326 -0.7207 23 1 1.6581 2.1325 0.0008 24 1 4.1204 2.1326 -0.0085 25 1 5.3517 0.0001 -0.0101 26 1 4.5116 -2.8184 -1.0304 27 1 5.2886 -2.3711 0.5073 28 1 3.7471 -3.2610 0.5149 29 1 -0.5269 -3.0444 -0.2296 30 1 -0.2793 -1.9268 0.9768 31 1 0.0025 -5.8999 0.7444 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095659838.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:24 Heat of formation + Delta-G solvation = 24.786804 kcal Electronic energy + Delta-G solvation = -13489.994978 eV Core-core repulsion = 11350.117235 eV Total energy + Delta-G solvation = -2139.877743 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.57040 -36.65034 -34.55960 -33.55587 -31.10069 -28.97554 -27.82515 -26.60544 -23.98758 -21.36176 -21.27689 -18.67886 -17.19316 -16.56317 -16.28359 -15.75894 -15.22451 -14.59622 -14.35483 -14.01678 -13.79439 -13.47874 -13.24712 -13.07973 -12.89683 -12.70292 -12.43736 -12.25947 -12.11653 -11.58656 -11.52374 -10.96399 -10.73664 -9.24124 -9.16291 -8.68597 -7.97959 -6.28382 0.71582 0.77595 1.35429 1.40453 1.50013 2.37573 3.07351 3.10887 4.19086 4.24459 4.32637 4.41992 4.61654 4.74204 4.90450 4.96726 4.98882 5.10608 5.19043 5.31565 5.33544 5.53783 5.64643 5.66816 5.78768 5.91630 6.03109 6.16271 6.24780 6.48887 6.72681 6.90414 7.09922 7.40452 8.84667 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.036718 B = 0.012158 C = 0.010080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.389325 B = 2302.483470 C = 2777.081056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.086 4.086 3 C -0.147 4.147 4 C -0.132 4.132 5 C -0.146 4.146 6 C -0.096 4.096 7 C -0.133 4.133 8 C -0.081 4.081 9 C 0.245 3.755 10 H 0.009 0.991 11 N -0.814 5.814 12 C -0.537 4.537 13 H 0.050 0.950 14 C 0.023 3.977 15 N -0.913 5.913 16 Si 0.950 3.050 17 H -0.273 1.273 18 H -0.281 1.281 19 H -0.281 1.281 20 H 0.051 0.949 21 H 0.038 0.962 22 H 0.124 0.876 23 H 0.134 0.866 24 H 0.144 0.856 25 H 0.133 0.867 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.088 0.912 29 H 0.327 0.673 30 H 0.326 0.674 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.427 7.854 -0.162 8.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.086 4.086 3 C -0.165 4.165 4 C -0.150 4.150 5 C -0.164 4.164 6 C -0.096 4.096 7 C -0.189 4.189 8 C -0.081 4.081 9 C 0.135 3.865 10 H 0.027 0.973 11 N -0.342 5.342 12 C -0.576 4.576 13 H 0.068 0.932 14 C -0.177 4.177 15 N -0.553 5.553 16 Si 0.777 3.223 17 H -0.197 1.197 18 H -0.207 1.207 19 H -0.207 1.207 20 H 0.070 0.930 21 H 0.057 0.943 22 H 0.141 0.859 23 H 0.152 0.848 24 H 0.161 0.839 25 H 0.151 0.849 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.106 0.894 29 H 0.141 0.859 30 H 0.138 0.862 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.463 8.243 -0.756 8.973 hybrid contribution 0.238 -1.682 1.426 2.218 sum 3.701 6.561 0.670 7.563 Atomic orbital electron populations 1.21492 0.90178 1.00946 1.04162 1.20200 0.97754 0.92152 0.98499 1.21283 0.94763 0.97425 1.03042 1.21283 0.94273 0.98216 1.01184 1.21171 1.00101 0.91894 1.03238 1.19965 0.93529 0.96118 1.00022 1.21182 0.99787 0.96180 1.01784 1.20248 0.93528 0.95865 0.98502 1.17703 0.86495 0.88040 0.94248 0.97336 1.60864 1.06154 1.36987 1.30183 1.21888 1.24152 1.02411 1.09153 0.93206 1.25635 0.95076 0.98262 0.98719 1.69892 1.29002 1.19285 1.37110 0.85617 0.78101 0.78596 0.79987 1.19721 1.20718 1.20724 0.93041 0.94293 0.85907 0.84774 0.83861 0.84893 0.92461 0.91552 0.89370 0.85929 0.86154 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.03 8.11 71.24 0.58 -3.45 16 2 C -0.09 -3.43 5.88 -19.87 -0.12 -3.55 16 3 C -0.15 -4.99 9.67 22.27 0.22 -4.77 16 4 C -0.13 -4.15 10.05 22.27 0.22 -3.92 16 5 C -0.15 -5.06 9.70 22.27 0.22 -4.84 16 6 C -0.10 -3.97 5.66 -19.87 -0.11 -4.08 16 7 C -0.13 -5.30 9.40 71.24 0.67 -4.63 16 8 C -0.08 -3.63 5.31 -19.87 -0.11 -3.73 16 9 C 0.25 12.16 2.53 43.42 0.11 12.27 16 10 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 11 N -0.81 -37.00 4.71 -174.95 -0.82 -37.82 16 12 C -0.54 -28.07 5.93 25.60 0.15 -27.92 16 13 H 0.05 2.68 6.90 -2.91 -0.02 2.66 16 14 C 0.02 1.22 5.39 84.65 0.46 1.68 16 15 N -0.91 -49.18 11.80 21.44 0.25 -48.93 16 16 Si 0.95 42.23 29.54 68.60 2.03 44.26 16 17 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 18 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 19 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 20 H 0.05 1.88 6.56 -2.38 -0.02 1.86 16 21 H 0.04 1.20 7.96 -2.39 -0.02 1.18 16 22 H 0.12 4.82 5.59 -24.59 -0.14 4.68 16 23 H 0.13 3.74 8.00 -2.91 -0.02 3.71 16 24 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 25 H 0.13 3.81 8.06 -2.91 -0.02 3.79 16 26 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.07 2.26 8.09 -2.38 -0.02 2.24 16 28 H 0.09 4.07 4.31 -2.39 -0.01 4.06 16 29 H 0.33 15.88 7.58 -89.69 -0.68 15.20 16 30 H 0.33 14.65 6.69 -89.69 -0.60 14.05 16 31 H 0.27 13.68 8.31 -92.71 -0.77 12.91 16 Total: -1.00 -55.15 247.40 3.48 -51.67 By element: Atomic # 1 Polarization: 38.03 SS G_CDS: -0.26 Total: 37.77 kcal Atomic # 6 Polarization: -49.23 SS G_CDS: 2.29 Total: -46.94 kcal Atomic # 7 Polarization: -86.18 SS G_CDS: -0.57 Total: -86.75 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -55.15 3.48 -51.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095659838.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.454 kcal (2) G-P(sol) polarization free energy of solvation -55.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds