Wall clock time and date at job start Mon Mar 30 2020 02:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50693 * 109.47399 * 2 1 4 4 C 1.38261 * 120.00126 * 264.98036 * 3 2 1 5 5 C 1.38215 * 119.99819 * 180.02562 * 4 3 2 6 6 C 1.38256 * 120.00312 * 359.97112 * 5 4 3 7 7 C 1.38216 * 119.99777 * 359.81316 * 6 5 4 8 8 C 1.38212 * 119.99987 * 84.99466 * 3 2 1 9 9 C 1.50696 * 120.00057 * 359.97438 * 8 3 2 10 10 H 1.09001 * 109.47545 * 325.00103 * 9 8 3 11 11 N 1.46900 * 109.47209 * 204.99800 * 9 8 3 12 12 C 1.50706 * 109.47259 * 84.99762 * 9 8 3 13 13 H 1.08005 * 119.99758 * 0.02562 * 12 9 8 14 14 C 1.37871 * 120.00102 * 180.02562 * 12 9 8 15 15 N 1.31516 * 120.00217 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 119.99766 * 179.97438 * 14 12 9 17 17 H 1.48501 * 109.47057 * 179.97438 * 16 14 12 18 18 H 1.48500 * 109.47389 * 300.00068 * 16 14 12 19 19 H 1.48504 * 109.47102 * 60.00417 * 16 14 12 20 20 H 1.09003 * 109.46669 * 60.00343 * 1 2 3 21 21 H 1.08994 * 109.47254 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47065 * 300.00276 * 1 2 3 23 23 H 1.08996 * 109.47065 * 239.99724 * 2 1 3 24 24 H 1.09002 * 109.46511 * 120.00183 * 2 1 3 25 25 H 1.07999 * 119.99614 * 359.96990 * 4 3 2 26 26 H 1.07999 * 119.99800 * 179.97438 * 5 4 3 27 27 H 1.08005 * 119.99930 * 179.97438 * 6 5 4 28 28 H 1.08002 * 119.99610 * 180.22925 * 7 6 5 29 29 H 1.00900 * 111.00100 * 299.99420 * 11 9 8 30 30 H 1.00898 * 111.00378 * 63.95632 * 11 9 8 31 31 H 0.97001 * 119.99646 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3616 2.0376 -1.1928 5 6 2.8229 3.3405 -1.1926 6 6 2.9545 4.0272 0.0001 7 6 2.6212 3.4120 1.1921 8 6 2.1643 2.1071 1.1924 9 6 1.8052 1.4349 2.4924 10 1 0.9565 0.7692 2.3351 11 7 1.4500 2.4541 3.4889 12 6 2.9840 0.6372 2.9879 13 1 3.9016 0.6193 2.4185 14 6 2.8910 -0.0696 4.1681 15 7 1.7736 -0.0481 4.8612 16 14 4.3519 -1.0588 4.7818 17 1 3.9982 -1.7211 6.0630 18 1 4.7109 -2.0888 3.7741 19 1 5.5084 -0.1523 4.9967 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 1.8933 -0.5139 -0.8899 24 1 1.8932 -0.5139 0.8900 25 1 2.2592 1.5010 -2.1244 26 1 3.0805 3.8222 -2.1243 27 1 3.3154 5.0452 0.0001 28 1 2.7205 3.9497 2.1234 29 1 2.2211 3.0839 3.6527 30 1 0.6228 2.9599 3.2098 31 1 1.0149 0.4653 4.5422 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104525920.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:23 Heat of formation + Delta-G solvation = 7.680332 kcal Electronic energy + Delta-G solvation = -13355.979466 eV Core-core repulsion = 11215.359931 eV Total energy + Delta-G solvation = -2140.619535 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.13358 -34.87445 -33.55292 -31.52671 -29.25202 -28.73482 -25.63532 -23.35733 -22.76387 -20.53636 -19.77400 -16.83660 -15.97246 -15.22600 -14.56205 -14.32750 -13.65429 -13.23156 -13.18722 -13.01252 -12.69589 -11.95736 -11.77763 -11.63052 -11.21375 -10.87078 -10.71953 -10.51241 -10.18172 -10.05481 -9.80734 -8.89169 -8.32860 -8.21408 -7.74450 -7.46773 -6.16046 -3.99207 1.94364 2.03640 3.48591 3.50074 3.68623 4.35928 4.63299 5.31189 5.37854 5.45471 5.50307 5.62285 5.70973 5.90910 5.97981 6.05200 6.12977 6.21866 6.36033 6.51242 6.54757 6.71377 6.88062 6.97083 7.02270 7.22860 7.43705 7.63164 8.02010 8.32977 8.68051 8.78029 9.07281 9.83773 11.23177 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.032569 B = 0.011347 C = 0.010492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.512630 B = 2467.054462 C = 2667.949246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.090 4.090 3 C -0.078 4.078 4 C -0.124 4.124 5 C -0.146 4.146 6 C -0.128 4.128 7 C -0.131 4.131 8 C -0.064 4.064 9 C 0.234 3.766 10 H 0.047 0.953 11 N -0.832 5.832 12 C -0.604 4.604 13 H 0.044 0.956 14 C 0.039 3.961 15 N -0.890 5.890 16 Si 1.062 2.938 17 H -0.284 1.284 18 H -0.290 1.290 19 H -0.290 1.290 20 H 0.044 0.956 21 H 0.052 0.948 22 H 0.057 0.943 23 H 0.057 0.943 24 H 0.097 0.903 25 H 0.110 0.890 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.114 0.886 29 H 0.325 0.675 30 H 0.301 0.699 31 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.330 3.781 -9.372 10.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.127 4.127 3 C -0.079 4.079 4 C -0.142 4.142 5 C -0.164 4.164 6 C -0.146 4.146 7 C -0.150 4.150 8 C -0.066 4.066 9 C 0.125 3.875 10 H 0.065 0.935 11 N -0.360 5.360 12 C -0.643 4.643 13 H 0.063 0.937 14 C -0.171 4.171 15 N -0.524 5.524 16 Si 0.891 3.109 17 H -0.209 1.209 18 H -0.217 1.217 19 H -0.217 1.217 20 H 0.063 0.937 21 H 0.071 0.929 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.115 0.885 25 H 0.128 0.872 26 H 0.127 0.873 27 H 0.128 0.872 28 H 0.131 0.869 29 H 0.139 0.861 30 H 0.112 0.888 31 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.057 2.173 -7.608 7.913 hybrid contribution -0.120 1.899 -2.162 2.881 sum -0.063 4.072 -9.771 10.585 Atomic orbital electron populations 1.21699 0.95609 1.01110 1.01398 1.20575 0.95452 0.93209 1.03433 1.19760 0.99450 0.96232 0.92443 1.20956 1.00846 0.95140 0.97232 1.20864 1.02973 0.95230 0.97381 1.20969 1.01408 0.99302 0.92950 1.20969 1.01001 0.95550 0.97448 1.21379 0.94159 0.93245 0.97807 1.18445 0.97223 0.89628 0.82160 0.93540 1.59455 1.07237 1.19201 1.50100 1.21621 0.98843 1.33119 1.10698 0.93723 1.25594 1.01720 0.96408 0.93402 1.70555 1.03741 1.38785 1.39354 0.83673 0.74892 0.76116 0.76227 1.20912 1.21657 1.21703 0.93653 0.92858 0.92417 0.92425 0.88485 0.87170 0.87264 0.87249 0.86859 0.86098 0.88833 0.89778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.72 37.16 0.36 -1.96 16 2 C -0.09 -1.66 5.38 -27.89 -0.15 -1.81 16 3 C -0.08 -1.54 5.13 -104.63 -0.54 -2.08 16 4 C -0.12 -2.14 9.68 -39.58 -0.38 -2.52 16 5 C -0.15 -2.39 10.05 -39.58 -0.40 -2.78 16 6 C -0.13 -2.19 10.05 -39.58 -0.40 -2.58 16 7 C -0.13 -2.56 9.27 -39.58 -0.37 -2.93 16 8 C -0.06 -1.36 4.98 -104.63 -0.52 -1.89 16 9 C 0.23 5.67 1.80 -70.02 -0.13 5.54 16 10 H 0.05 1.20 5.49 -51.93 -0.28 0.92 16 11 N -0.83 -19.04 7.39 -6.65 -0.05 -19.09 16 12 C -0.60 -16.59 7.91 -34.44 -0.27 -16.86 16 13 H 0.04 1.27 7.74 -52.48 -0.41 0.86 16 14 C 0.04 1.09 5.39 -17.82 -0.10 0.99 16 15 N -0.89 -26.55 13.51 55.43 0.75 -25.80 16 16 Si 1.06 25.24 29.90 -169.99 -5.08 20.16 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 18 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 20 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 21 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 22 H 0.06 1.04 6.80 -51.93 -0.35 0.69 16 23 H 0.06 0.93 8.05 -51.93 -0.42 0.52 16 24 H 0.10 2.10 6.42 -51.93 -0.33 1.76 16 25 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 26 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 27 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 28 H 0.11 2.12 6.29 -52.49 -0.33 1.79 16 29 H 0.33 7.24 7.21 -39.29 -0.28 6.96 16 30 H 0.30 6.12 9.06 -39.29 -0.36 5.77 16 31 H 0.29 8.63 6.40 -40.82 -0.26 8.37 16 LS Contribution 255.38 15.07 3.85 3.85 Total: -1.00 -29.68 255.38 -7.36 -37.03 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -3.94 Total: 12.72 kcal Atomic # 6 Polarization: -25.98 SS G_CDS: -2.89 Total: -28.87 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: 0.70 Total: -44.89 kcal Atomic # 14 Polarization: 25.24 SS G_CDS: -5.08 Total: 20.16 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -29.68 -7.36 -37.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104525920.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.715 kcal (2) G-P(sol) polarization free energy of solvation -29.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds