Wall clock time and date at job start Mon Mar 30 2020 02:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30836 * 1 3 3 Si 1.86797 * 120.00452 * 2 1 4 4 H 1.48504 * 109.46937 * 274.98748 * 3 2 1 5 5 H 1.48504 * 109.47103 * 34.98558 * 3 2 1 6 6 H 1.48494 * 109.47172 * 154.98655 * 3 2 1 7 7 C 1.39928 * 119.99674 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00501 * 196.20876 * 7 2 1 9 9 C 1.41409 * 120.00019 * 16.20212 * 7 2 1 10 10 C 1.40784 * 120.21175 * 212.45921 * 9 7 2 11 11 C 1.37640 * 119.89006 * 179.97438 * 10 9 7 12 12 C 1.38530 * 120.32447 * 0.02562 * 11 10 9 13 13 C 1.39268 * 120.42503 * 359.95667 * 12 11 10 14 14 N 1.39881 * 119.94777 * 180.02562 * 13 12 11 15 15 C 1.37657 * 120.00020 * 37.52487 * 14 13 12 16 16 N 1.30330 * 120.00389 * 5.89819 * 15 14 13 17 17 N 1.37508 * 119.99871 * 185.90479 * 15 14 13 18 18 C 1.38291 * 120.10126 * 0.29124 * 13 12 11 19 19 H 0.97001 * 119.99004 * 0.02562 * 1 2 3 20 20 H 1.07999 * 120.05402 * 0.02562 * 10 9 7 21 21 H 1.08001 * 119.83875 * 180.02562 * 11 10 9 22 22 H 1.07996 * 119.79047 * 179.97438 * 12 11 10 23 23 H 0.96998 * 119.99844 * 217.52174 * 14 13 12 24 24 H 0.97000 * 119.99471 * 6.30208 * 16 15 14 25 25 H 0.96994 * 119.99950 * 179.97438 * 17 15 14 26 26 H 0.96998 * 119.99867 * 359.71954 * 17 15 14 27 27 H 1.07993 * 120.16017 * 179.70342 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2425 1.6176 0.0000 4 1 2.3846 2.1071 -1.3948 5 1 1.4966 2.6199 0.8028 6 1 3.5887 1.4119 0.5920 7 6 2.0079 -1.2119 0.0005 8 1 3.0558 -1.2305 0.2616 9 6 1.3429 -2.4123 -0.3406 10 6 1.7233 -3.6279 0.2590 11 6 1.0712 -4.7924 -0.0776 12 6 0.0419 -4.7747 -1.0045 13 6 -0.3456 -3.5796 -1.6055 14 7 -1.3866 -3.5732 -2.5398 15 6 -2.4794 -4.3905 -2.3583 16 7 -2.5995 -5.0840 -1.2614 17 7 -3.4442 -4.4752 -3.3344 18 6 0.3010 -2.4002 -1.2842 19 1 -0.4849 0.8401 -0.0004 20 1 2.5250 -3.6466 0.9824 21 1 1.3634 -5.7244 0.3832 22 1 -0.4637 -5.6935 -1.2625 23 1 -1.3385 -2.9929 -3.3155 24 1 -1.9689 -4.9563 -0.5354 25 1 -4.2140 -5.0514 -3.2067 26 1 -3.3568 -3.9561 -4.1490 27 1 0.0045 -1.4737 -1.7532 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000115436252.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:05 Heat of formation + Delta-G solvation = 32.078995 kcal Electronic energy + Delta-G solvation = -12687.449883 eV Core-core repulsion = 10444.348011 eV Total energy + Delta-G solvation = -2243.101873 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.51520 -38.27485 -35.56446 -34.26691 -32.23788 -31.28998 -29.70605 -27.14497 -23.14900 -22.98987 -21.30153 -19.44966 -18.60521 -18.04855 -17.05393 -16.56679 -16.08671 -15.47454 -15.40436 -14.61880 -14.34052 -14.04038 -13.54236 -12.98214 -12.82131 -12.53733 -12.19465 -11.76432 -11.61209 -11.11410 -10.65630 -10.40795 -9.37941 -9.28584 -8.66641 -8.45924 -6.39304 0.86894 1.01620 1.40033 1.49486 1.53226 2.11041 2.19846 2.22993 2.75232 3.35158 3.67196 4.41498 4.60255 4.84357 5.03750 5.11208 5.17907 5.22559 5.38527 5.77903 5.86898 5.96142 6.05798 6.17685 6.39358 6.67797 6.76390 6.93318 6.94514 7.16487 7.89718 8.36601 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.041372 B = 0.009562 C = 0.008143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.617121 B = 2927.587474 C = 3437.647771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.038 3.962 3 Si 0.981 3.019 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.258 1.258 7 C -0.505 4.505 8 H 0.079 0.921 9 C 0.103 3.897 10 C -0.245 4.245 11 C -0.074 4.074 12 C -0.264 4.264 13 C 0.171 3.829 14 N -0.704 5.704 15 C 0.627 3.373 16 N -0.861 5.861 17 N -0.830 5.830 18 C -0.200 4.200 19 H 0.286 0.714 20 H 0.103 0.897 21 H 0.125 0.875 22 H 0.111 0.889 23 H 0.403 0.597 24 H 0.344 0.656 25 H 0.422 0.578 26 H 0.415 0.585 27 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.413 -1.275 -6.490 7.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.176 4.176 3 Si 0.802 3.198 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.182 1.182 7 C -0.535 4.535 8 H 0.097 0.903 9 C 0.100 3.900 10 C -0.265 4.265 11 C -0.093 4.093 12 C -0.286 4.286 13 C 0.076 3.924 14 N -0.341 5.341 15 C 0.258 3.742 16 N -0.514 5.514 17 N -0.388 5.388 18 C -0.223 4.223 19 H 0.096 0.904 20 H 0.121 0.879 21 H 0.143 0.857 22 H 0.129 0.871 23 H 0.239 0.761 24 H 0.164 0.836 25 H 0.255 0.745 26 H 0.246 0.754 27 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.235 -1.890 -6.060 7.125 hybrid contribution 0.850 1.547 -0.289 1.789 sum -2.385 -0.342 -6.349 6.791 Atomic orbital electron populations 1.69894 1.08950 1.30375 1.36520 1.26686 0.95422 1.04281 0.91212 0.85207 0.79138 0.76129 0.79312 1.18654 1.19634 1.18200 1.19777 0.97855 0.92045 1.43854 0.90336 1.17761 0.90627 0.93212 0.88416 1.21295 1.05936 0.93617 1.05644 1.20760 0.94667 0.97493 0.96369 1.20599 1.04622 0.95692 1.07652 1.17453 0.88976 0.93631 0.92327 1.42820 1.18351 1.45972 1.26969 1.19120 0.82109 0.83920 0.89025 1.69538 1.42091 1.35028 1.04737 1.41394 1.24190 1.53864 1.19304 1.20820 1.04029 0.94593 1.02846 0.90386 0.87881 0.85664 0.87122 0.76108 0.83571 0.74484 0.75392 0.88443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.60 11.44 21.82 0.25 -43.35 15 2 C 0.04 1.92 5.11 85.25 0.44 2.36 15 3 Si 0.98 37.91 29.59 68.60 2.03 39.94 15 4 H -0.26 -9.72 7.11 99.48 0.71 -9.02 15 5 H -0.27 -10.10 7.11 99.48 0.71 -9.40 15 6 H -0.26 -9.73 7.11 99.48 0.71 -9.02 15 7 C -0.51 -26.95 9.02 23.46 0.21 -26.73 15 8 H 0.08 4.04 7.90 -2.91 -0.02 4.01 15 9 C 0.10 5.49 5.47 -21.31 -0.12 5.37 15 10 C -0.24 -11.95 9.79 22.75 0.22 -11.73 15 11 C -0.07 -3.27 10.02 22.20 0.22 -3.04 15 12 C -0.26 -11.75 7.59 22.59 0.17 -11.58 15 13 C 0.17 7.81 6.01 38.12 0.23 8.04 15 14 N -0.70 -26.03 5.44 -189.33 -1.03 -27.06 15 15 C 0.63 21.96 8.68 260.44 2.26 24.22 15 16 N -0.86 -35.14 13.03 -58.41 -0.76 -35.90 15 17 N -0.83 -19.19 9.02 -58.45 -0.53 -19.71 15 18 C -0.20 -10.25 8.57 22.85 0.20 -10.05 15 19 H 0.29 13.64 8.30 -92.71 -0.77 12.87 15 20 H 0.10 4.73 8.06 -2.91 -0.02 4.70 15 21 H 0.13 4.64 8.06 -2.91 -0.02 4.62 15 22 H 0.11 4.75 6.51 -2.91 -0.02 4.73 15 23 H 0.40 12.58 8.93 -92.71 -0.83 11.75 15 24 H 0.34 15.46 5.54 -92.71 -0.51 14.95 15 25 H 0.42 8.54 8.94 -92.71 -0.83 7.71 15 26 H 0.41 6.75 8.94 -92.71 -0.83 5.93 15 27 H 0.10 5.17 6.73 -2.91 -0.02 5.15 15 Total: -1.00 -62.28 237.98 2.04 -60.24 By element: Atomic # 1 Polarization: 50.75 SS G_CDS: -1.76 Total: 49.00 kcal Atomic # 6 Polarization: -26.99 SS G_CDS: 3.83 Total: -23.15 kcal Atomic # 7 Polarization: -123.96 SS G_CDS: -2.07 Total: -126.03 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 2.03 Total: 39.94 kcal Total: -62.28 2.04 -60.24 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115436252.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.323 kcal (2) G-P(sol) polarization free energy of solvation -62.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds