Wall clock time and date at job start Mon Mar 30 2020 02:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38529 * 119.78863 * 2 1 4 4 C 1.37646 * 120.32431 * 180.27299 * 3 2 1 5 5 C 1.50698 * 120.05331 * 179.73838 * 4 3 2 6 6 C 1.40793 * 119.89151 * 359.49619 * 4 3 2 7 7 C 1.41412 * 120.20568 * 180.25411 * 6 4 3 8 8 H 1.07996 * 119.99664 * 227.99923 * 7 6 4 9 9 C 1.39930 * 119.99852 * 47.99591 * 7 6 4 10 10 N 1.30825 * 120.00035 * 19.76448 * 9 7 6 11 11 Si 1.86799 * 119.99813 * 199.75865 * 9 7 6 12 12 H 1.48499 * 109.47211 * 90.00512 * 11 9 7 13 13 H 1.48496 * 109.47035 * 210.00361 * 11 9 7 14 14 H 1.48503 * 109.47386 * 330.00281 * 11 9 7 15 15 C 1.40563 * 119.58443 * 0.49246 * 6 4 3 16 16 C 1.50705 * 120.16130 * 179.77811 * 15 6 4 17 17 C 1.38318 * 119.67706 * 359.76078 * 15 6 4 18 18 N 1.39683 * 119.95530 * 179.97438 * 17 15 6 19 19 H 1.09006 * 109.46713 * 90.00054 * 1 2 3 20 20 H 1.08995 * 109.47769 * 210.00249 * 1 2 3 21 21 H 1.09007 * 109.47128 * 330.01339 * 1 2 3 22 22 H 1.08001 * 119.83535 * 359.97438 * 3 2 1 23 23 H 1.09002 * 109.46410 * 90.92304 * 5 4 3 24 24 H 1.08994 * 109.47478 * 210.91887 * 5 4 3 25 25 H 1.08996 * 109.47201 * 330.92808 * 5 4 3 26 26 H 0.97001 * 120.00047 * 184.74986 * 10 9 7 27 27 H 1.09002 * 109.46995 * 269.98641 * 16 15 6 28 28 H 1.08999 * 109.46760 * 29.97752 * 16 15 6 29 29 H 1.08999 * 109.46959 * 149.98154 * 16 15 6 30 30 H 0.96993 * 120.00589 * 180.02562 * 18 17 15 31 31 H 0.97008 * 119.99404 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.2022 0.0000 4 6 3.5716 1.2151 -0.0057 5 6 4.3140 2.5265 -0.0116 6 6 4.2846 0.0011 -0.0007 7 6 5.6988 0.0066 -0.0011 8 1 6.2410 -0.6200 -0.6937 9 6 6.3954 0.8241 0.8959 10 7 5.7976 1.2774 1.9676 11 14 8.1791 1.2679 0.5630 12 1 8.2373 2.5185 -0.2356 13 1 8.8877 1.4705 1.8522 14 1 8.8305 0.1675 -0.1922 15 6 3.5821 -1.2163 -0.0006 16 6 4.3323 -2.5234 -0.0004 17 6 2.1990 -1.2089 -0.0002 18 7 1.4950 -2.4153 -0.0006 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3634 -0.8899 0.5138 21 1 -0.3634 0.8902 0.5137 22 1 1.6491 2.1340 -0.0004 23 1 4.5116 2.8367 1.0145 24 1 5.2580 2.4072 -0.5432 25 1 3.7094 3.2841 -0.5101 26 1 6.2575 1.8989 2.5533 27 1 4.5129 -2.8388 -1.0281 28 1 5.2852 -2.3953 0.5131 29 1 3.7414 -3.2814 0.5138 30 1 0.5250 -2.4109 -0.0007 31 1 1.9762 -3.2576 -0.0007 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000143761432.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:48 Heat of formation + Delta-G solvation = 1.756463 kcal Electronic energy + Delta-G solvation = -13407.871063 eV Core-core repulsion = 11266.994650 eV Total energy + Delta-G solvation = -2140.876413 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.36778 -34.78406 -32.95484 -31.79168 -29.79281 -27.24141 -26.65395 -24.55240 -23.19635 -19.52459 -19.00489 -17.11925 -16.26284 -15.14042 -14.56694 -13.36176 -13.17381 -13.06712 -12.69674 -12.26546 -12.05399 -11.85941 -11.72796 -11.41036 -11.16523 -10.98801 -10.72104 -10.54966 -10.44210 -10.28064 -9.61667 -9.25143 -8.98224 -8.48776 -6.96740 -6.52520 -6.03614 -4.26940 2.89062 3.14520 3.19517 3.22459 3.29922 4.12147 4.77859 4.92154 5.51320 5.94975 6.10302 6.31905 6.35985 6.38409 6.53666 6.66835 6.73142 6.80809 6.98233 7.04606 7.15358 7.20979 7.35739 7.44421 7.62768 7.90023 8.01078 8.10792 8.28621 8.58863 8.76096 8.79584 9.07259 9.13592 10.46457 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.041870 B = 0.011919 C = 0.009855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.568486 B = 2348.538265 C = 2840.405737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.254 4.254 3 C -0.071 4.071 4 C -0.162 4.162 5 C -0.079 4.079 6 C 0.156 3.844 7 C -0.481 4.481 8 H 0.075 0.925 9 C 0.087 3.913 10 N -0.802 5.802 11 Si 0.887 3.113 12 H -0.270 1.270 13 H -0.282 1.282 14 H -0.265 1.265 15 C -0.234 4.234 16 C -0.074 4.074 17 C 0.220 3.780 18 N -0.894 5.894 19 H 0.040 0.960 20 H 0.041 0.959 21 H 0.046 0.954 22 H 0.088 0.912 23 H 0.061 0.939 24 H 0.054 0.946 25 H 0.019 0.981 26 H 0.275 0.725 27 H 0.035 0.965 28 H 0.065 0.935 29 H 0.030 0.970 30 H 0.382 0.618 31 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.766 -2.074 -2.115 4.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.259 4.259 3 C -0.089 4.089 4 C -0.164 4.164 5 C -0.135 4.135 6 C 0.154 3.846 7 C -0.512 4.512 8 H 0.093 0.907 9 C -0.128 4.128 10 N -0.430 5.430 11 Si 0.712 3.288 12 H -0.195 1.195 13 H -0.208 1.208 14 H -0.189 1.189 15 C -0.239 4.239 16 C -0.131 4.131 17 C 0.119 3.881 18 N -0.437 5.437 19 H 0.059 0.941 20 H 0.060 0.940 21 H 0.065 0.935 22 H 0.106 0.894 23 H 0.080 0.920 24 H 0.073 0.927 25 H 0.038 0.962 26 H 0.085 0.915 27 H 0.054 0.946 28 H 0.084 0.916 29 H 0.049 0.951 30 H 0.210 0.790 31 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -3.663 -1.924 -1.868 4.540 hybrid contribution 0.615 0.015 0.017 0.615 sum -3.048 -1.908 -1.851 4.045 Atomic orbital electron populations 1.20271 0.93888 1.00032 0.99417 1.18712 0.93484 0.91992 1.21690 1.20178 0.93746 0.94910 1.00113 1.19764 0.92007 0.95124 1.09536 1.20506 0.98609 0.93462 1.00924 1.17053 0.92905 0.88862 0.85818 1.19192 0.91060 1.23492 1.17502 0.90698 1.25550 0.99197 0.94610 0.93471 1.69886 1.39185 1.25117 1.08800 0.86666 0.83835 0.79861 0.78452 1.19530 1.20752 1.18928 1.19486 0.90334 0.95534 1.18571 1.20211 0.99870 0.93977 0.99065 1.17162 0.90625 0.84861 0.95425 1.42507 1.07684 1.05566 1.87922 0.94117 0.94045 0.93490 0.89378 0.92026 0.92728 0.96190 0.91455 0.94611 0.91642 0.95092 0.79012 0.78623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.39 9.56 36.00 0.34 -1.05 16 2 C -0.25 -5.65 5.92 -104.12 -0.62 -6.26 16 3 C -0.07 -1.67 9.31 -39.69 -0.37 -2.04 16 4 C -0.16 -4.15 5.59 -103.87 -0.58 -4.73 16 5 C -0.08 -1.88 8.30 36.00 0.30 -1.58 16 6 C 0.16 4.16 5.20 -106.85 -0.56 3.60 16 7 C -0.48 -12.77 6.79 -37.74 -0.26 -13.02 16 8 H 0.08 1.96 7.86 -52.49 -0.41 1.54 16 9 C 0.09 2.21 3.52 -17.35 -0.06 2.15 16 10 N -0.80 -21.25 10.88 55.55 0.60 -20.64 16 11 Si 0.89 19.22 29.61 -169.99 -5.03 14.19 16 12 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 13 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 14 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 15 C -0.23 -5.73 5.96 -103.71 -0.62 -6.35 16 16 C -0.07 -1.58 9.13 36.01 0.33 -1.25 16 17 C 0.22 4.94 6.70 -83.86 -0.56 4.38 16 18 N -0.89 -15.85 8.88 32.37 0.29 -15.57 16 19 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 20 H 0.04 0.65 6.52 -51.93 -0.34 0.32 16 21 H 0.05 0.78 8.08 -51.93 -0.42 0.36 16 22 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 23 H 0.06 1.52 6.64 -51.93 -0.34 1.18 16 24 H 0.05 1.33 6.49 -51.93 -0.34 0.99 16 25 H 0.02 0.41 8.08 -51.93 -0.42 -0.01 16 26 H 0.27 6.73 8.30 -40.82 -0.34 6.39 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.06 1.47 7.12 -51.93 -0.37 1.10 16 29 H 0.03 0.57 6.54 -51.93 -0.34 0.23 16 30 H 0.38 5.86 6.80 -40.82 -0.28 5.59 16 31 H 0.39 6.21 6.81 -40.82 -0.28 5.93 16 LS Contribution 250.24 15.07 3.77 3.77 Total: -1.00 -28.15 250.24 -6.96 -35.11 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -3.94 Total: 9.30 kcal Atomic # 6 Polarization: -23.51 SS G_CDS: -2.65 Total: -26.16 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: 0.89 Total: -36.21 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.19 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -28.15 -6.96 -35.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000143761432.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.867 kcal (2) G-P(sol) polarization free energy of solvation -28.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds