Wall clock time and date at job start Mon Mar 30 2020 02:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38529 * 119.78863 * 2 1 4 4 C 1.37646 * 120.32431 * 180.27299 * 3 2 1 5 5 C 1.50698 * 120.05331 * 179.73838 * 4 3 2 6 6 C 1.40793 * 119.89151 * 359.49619 * 4 3 2 7 7 C 1.41412 * 120.20568 * 180.25411 * 6 4 3 8 8 H 1.07996 * 119.99664 * 227.99923 * 7 6 4 9 9 C 1.39930 * 119.99852 * 47.99591 * 7 6 4 10 10 N 1.30825 * 120.00035 * 19.76448 * 9 7 6 11 11 Si 1.86799 * 119.99813 * 199.75865 * 9 7 6 12 12 H 1.48499 * 109.47211 * 90.00512 * 11 9 7 13 13 H 1.48496 * 109.47035 * 210.00361 * 11 9 7 14 14 H 1.48503 * 109.47386 * 330.00281 * 11 9 7 15 15 C 1.40563 * 119.58443 * 0.49246 * 6 4 3 16 16 C 1.50705 * 120.16130 * 179.77811 * 15 6 4 17 17 C 1.38318 * 119.67706 * 359.76078 * 15 6 4 18 18 N 1.39683 * 119.95530 * 179.97438 * 17 15 6 19 19 H 1.09006 * 109.46713 * 90.00054 * 1 2 3 20 20 H 1.08995 * 109.47769 * 210.00249 * 1 2 3 21 21 H 1.09007 * 109.47128 * 330.01339 * 1 2 3 22 22 H 1.08001 * 119.83535 * 359.97438 * 3 2 1 23 23 H 1.09002 * 109.46410 * 90.92304 * 5 4 3 24 24 H 1.08994 * 109.47478 * 210.91887 * 5 4 3 25 25 H 1.08996 * 109.47201 * 330.92808 * 5 4 3 26 26 H 0.97001 * 120.00047 * 184.74986 * 10 9 7 27 27 H 1.09002 * 109.46995 * 269.98641 * 16 15 6 28 28 H 1.08999 * 109.46760 * 29.97752 * 16 15 6 29 29 H 1.08999 * 109.46959 * 149.98154 * 16 15 6 30 30 H 0.96993 * 120.00589 * 180.02562 * 18 17 15 31 31 H 0.97008 * 119.99404 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.2022 0.0000 4 6 3.5716 1.2151 -0.0057 5 6 4.3140 2.5265 -0.0116 6 6 4.2846 0.0011 -0.0007 7 6 5.6988 0.0066 -0.0011 8 1 6.2410 -0.6200 -0.6937 9 6 6.3954 0.8241 0.8959 10 7 5.7976 1.2774 1.9676 11 14 8.1791 1.2679 0.5630 12 1 8.2373 2.5185 -0.2356 13 1 8.8877 1.4705 1.8522 14 1 8.8305 0.1675 -0.1922 15 6 3.5821 -1.2163 -0.0006 16 6 4.3323 -2.5234 -0.0004 17 6 2.1990 -1.2089 -0.0002 18 7 1.4950 -2.4153 -0.0006 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3634 -0.8899 0.5138 21 1 -0.3634 0.8902 0.5137 22 1 1.6491 2.1340 -0.0004 23 1 4.5116 2.8367 1.0145 24 1 5.2580 2.4072 -0.5432 25 1 3.7094 3.2841 -0.5101 26 1 6.2575 1.8989 2.5533 27 1 4.5129 -2.8388 -1.0281 28 1 5.2852 -2.3953 0.5131 29 1 3.7414 -3.2814 0.5138 30 1 0.5250 -2.4109 -0.0007 31 1 1.9762 -3.2576 -0.0007 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000143761432.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:48 Heat of formation + Delta-G solvation = -14.462348 kcal Electronic energy + Delta-G solvation = -13408.574364 eV Core-core repulsion = 11266.994650 eV Total energy + Delta-G solvation = -2141.579714 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.12620 -36.55371 -34.70788 -33.57317 -31.47787 -29.04407 -28.34968 -26.31895 -25.00309 -21.27850 -20.81416 -18.94321 -17.87102 -16.98362 -16.28947 -15.09236 -14.84604 -14.81102 -14.44584 -13.86296 -13.74726 -13.64124 -13.35384 -13.17202 -12.96061 -12.65340 -12.55271 -12.16276 -12.14349 -12.03726 -11.39603 -11.06153 -10.79143 -10.30309 -8.83146 -8.40632 -7.74611 -6.23376 1.08076 1.33398 1.42022 1.50966 1.53848 2.31831 2.90645 3.41993 3.65305 4.40770 4.50159 4.67128 4.74758 4.88532 4.97032 4.99109 5.06080 5.10777 5.21805 5.25599 5.31948 5.40684 5.48703 5.63579 5.88853 6.13096 6.19521 6.27933 6.43711 6.79009 6.96936 7.16417 7.25193 7.37513 8.58657 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.041870 B = 0.011919 C = 0.009855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.568486 B = 2348.538265 C = 2840.405737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.257 4.257 3 C -0.083 4.083 4 C -0.194 4.194 5 C -0.068 4.068 6 C 0.120 3.880 7 C -0.506 4.506 8 H 0.065 0.935 9 C 0.054 3.946 10 N -0.837 5.837 11 Si 0.948 3.052 12 H -0.265 1.265 13 H -0.276 1.276 14 H -0.263 1.263 15 C -0.260 4.260 16 C -0.067 4.067 17 C 0.215 3.785 18 N -0.876 5.876 19 H 0.058 0.942 20 H 0.061 0.939 21 H 0.057 0.943 22 H 0.106 0.894 23 H 0.048 0.952 24 H 0.040 0.960 25 H 0.041 0.959 26 H 0.279 0.721 27 H 0.046 0.954 28 H 0.043 0.957 29 H 0.056 0.944 30 H 0.398 0.602 31 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.017 -2.625 -2.425 6.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.262 4.262 3 C -0.102 4.102 4 C -0.197 4.197 5 C -0.124 4.124 6 C 0.118 3.882 7 C -0.538 4.538 8 H 0.083 0.917 9 C -0.158 4.158 10 N -0.465 5.465 11 Si 0.771 3.229 12 H -0.190 1.190 13 H -0.201 1.201 14 H -0.187 1.187 15 C -0.266 4.266 16 C -0.124 4.124 17 C 0.112 3.888 18 N -0.420 5.420 19 H 0.076 0.924 20 H 0.079 0.921 21 H 0.076 0.924 22 H 0.124 0.876 23 H 0.066 0.934 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.089 0.911 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.228 0.772 31 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -4.942 -2.508 -2.185 5.957 hybrid contribution 0.841 0.112 0.091 0.853 sum -4.102 -2.396 -2.094 5.191 Atomic orbital electron populations 1.20314 0.90401 1.01606 1.00996 1.19287 0.96152 0.91406 1.19397 1.20491 0.93287 0.96508 0.99899 1.20055 0.93232 0.95376 1.11004 1.20371 0.98268 0.93736 1.00059 1.17425 0.93421 0.90201 0.87187 1.19284 0.91631 1.24740 1.18128 0.91710 1.26152 1.02733 0.94151 0.92809 1.69936 1.40938 1.26050 1.09623 0.85721 0.79177 0.79594 0.78402 1.18960 1.20128 1.18721 1.19911 0.91824 0.96087 1.18760 1.20149 0.98954 0.93509 0.99777 1.17285 0.90302 0.86632 0.94574 1.42358 1.08458 1.04488 1.86699 0.92372 0.92052 0.92447 0.87586 0.93381 0.94106 0.94047 0.91111 0.93536 0.93763 0.92478 0.77214 0.77479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.40 9.56 71.24 0.68 -1.72 16 2 C -0.26 -10.90 5.92 -19.54 -0.12 -11.01 16 3 C -0.08 -3.85 9.31 22.20 0.21 -3.64 16 4 C -0.19 -10.06 5.59 -19.38 -0.11 -10.17 16 5 C -0.07 -3.29 8.30 71.24 0.59 -2.70 16 6 C 0.12 6.51 5.20 -21.31 -0.11 6.40 16 7 C -0.51 -27.65 6.79 23.46 0.16 -27.49 16 8 H 0.06 3.52 7.86 -2.91 -0.02 3.50 16 9 C 0.05 2.78 3.52 85.25 0.30 3.08 16 10 N -0.84 -45.35 10.88 21.82 0.24 -45.12 16 11 Si 0.95 40.13 29.61 68.60 2.03 42.16 16 12 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 13 H -0.28 -11.31 7.11 99.48 0.71 -10.61 16 14 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 15 C -0.26 -12.69 5.96 -19.28 -0.11 -12.81 16 16 C -0.07 -2.82 9.13 71.24 0.65 -2.17 16 17 C 0.22 9.25 6.70 38.16 0.26 9.51 16 18 N -0.88 -28.27 8.88 -51.49 -0.46 -28.72 16 19 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 20 H 0.06 1.68 6.52 -2.39 -0.02 1.66 16 21 H 0.06 1.70 8.08 -2.38 -0.02 1.68 16 22 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 23 H 0.05 2.43 6.64 -2.39 -0.02 2.41 16 24 H 0.04 2.03 6.49 -2.39 -0.02 2.01 16 25 H 0.04 1.74 8.08 -2.39 -0.02 1.72 16 26 H 0.28 13.95 8.30 -92.71 -0.77 13.18 16 27 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.04 2.02 7.12 -2.39 -0.02 2.00 16 29 H 0.06 2.03 6.54 -2.39 -0.02 2.01 16 30 H 0.40 10.58 6.80 -92.71 -0.63 9.95 16 31 H 0.40 11.44 6.81 -92.70 -0.63 10.81 16 Total: -1.00 -60.77 250.24 4.09 -56.67 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: -0.11 Total: 27.73 kcal Atomic # 6 Polarization: -55.12 SS G_CDS: 2.39 Total: -52.72 kcal Atomic # 7 Polarization: -73.62 SS G_CDS: -0.22 Total: -73.84 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 2.03 Total: 42.16 kcal Total: -60.77 4.09 -56.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000143761432.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.211 kcal (2) G-P(sol) polarization free energy of solvation -60.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds