Wall clock time and date at job start Mon Mar 30 2020 02:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46903 * 111.00296 * 2 1 4 4 H 1.09004 * 109.46866 * 37.40806 * 3 2 1 5 5 C 1.50694 * 109.47567 * 157.40963 * 3 2 1 6 6 H 1.08005 * 119.99477 * 114.52715 * 5 3 2 7 7 C 1.37873 * 120.00475 * 294.53095 * 5 3 2 8 8 N 1.31519 * 119.99475 * 358.62075 * 7 5 3 9 9 Si 1.86799 * 120.00346 * 178.61885 * 7 5 3 10 10 H 1.48504 * 109.47039 * 179.97438 * 9 7 5 11 11 H 1.48497 * 109.47019 * 300.00168 * 9 7 5 12 12 H 1.48497 * 109.46952 * 59.99797 * 9 7 5 13 13 C 1.50704 * 109.47151 * 277.41466 * 3 2 1 14 14 C 1.38231 * 119.99747 * 312.20815 * 13 3 2 15 15 C 1.38233 * 119.99794 * 179.78949 * 14 13 3 16 16 C 1.38239 * 119.99960 * 0.43850 * 15 14 13 17 17 C 1.50707 * 119.99891 * 179.83710 * 16 15 14 18 18 C 1.38236 * 120.00134 * 359.80892 * 16 15 14 19 19 C 1.38235 * 119.99690 * 359.97438 * 18 16 15 20 20 H 1.09002 * 109.47405 * 184.95857 * 1 2 3 21 21 H 1.09003 * 109.47131 * 304.95710 * 1 2 3 22 22 H 1.08997 * 109.47610 * 64.95470 * 1 2 3 23 23 H 1.00899 * 111.00152 * 236.04760 * 2 1 3 24 24 H 0.97000 * 120.00140 * 355.33979 * 8 7 5 25 25 H 1.08003 * 120.00148 * 359.97438 * 14 13 3 26 26 H 1.08003 * 120.00357 * 180.27289 * 15 14 13 27 27 H 1.08993 * 109.46831 * 269.97449 * 17 16 15 28 28 H 1.09001 * 109.47011 * 29.97358 * 17 16 15 29 29 H 1.09005 * 109.46742 * 149.97584 * 17 16 15 30 30 H 1.07995 * 120.00093 * 180.02562 * 18 16 15 31 31 H 1.07998 * 119.99587 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3636 2.0032 0.6243 5 6 3.4001 1.3703 0.5458 6 1 4.2282 1.6374 -0.0941 7 6 3.6282 1.0284 1.8618 8 7 2.6172 0.7295 2.6481 9 14 5.3729 0.9896 2.5279 10 1 5.3476 0.5957 3.9596 11 1 6.1752 0.0058 1.7574 12 1 5.9830 2.3371 2.3965 13 6 2.0043 1.9061 -1.4090 14 6 2.5252 1.1407 -2.4354 15 6 2.5294 1.6293 -3.7284 16 6 2.0209 2.8872 -3.9936 17 6 2.0289 3.4214 -5.4028 18 6 1.5047 3.6547 -2.9664 19 6 1.4964 3.1642 -1.6740 20 1 -0.3634 -1.0238 0.0888 21 1 -0.3633 0.5888 0.8423 22 1 -0.3634 0.4350 -0.9310 23 1 1.8305 -0.5261 -0.7814 24 1 1.7076 0.8148 2.3223 25 1 2.9262 0.1596 -2.2275 26 1 2.9324 1.0296 -4.5312 27 1 2.9594 3.9598 -5.5820 28 1 1.9475 2.5926 -6.1061 29 1 1.1853 4.0981 -5.5395 30 1 1.1071 4.6372 -3.1736 31 1 1.0935 3.7640 -0.8714 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000148523048.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:29 Heat of formation + Delta-G solvation = 13.160228 kcal Electronic energy + Delta-G solvation = -13085.879758 eV Core-core repulsion = 10945.497850 eV Total energy + Delta-G solvation = -2140.381909 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.00574 -35.75295 -32.12309 -31.86995 -30.36869 -27.97135 -25.23279 -23.65055 -22.43730 -21.54601 -19.90876 -16.85639 -16.07281 -14.87503 -14.56496 -14.00184 -13.65977 -13.53621 -13.09544 -12.86815 -12.77633 -12.36892 -11.92259 -11.86311 -11.37125 -10.98512 -10.89725 -10.67728 -10.35581 -10.08275 -9.88589 -8.83277 -8.38467 -8.31910 -7.76032 -7.19269 -6.22083 -3.99345 1.94934 1.95411 3.49511 3.51314 3.69685 4.33203 4.62649 5.21529 5.23182 5.31148 5.49148 5.61836 5.72949 5.79571 5.81230 5.97461 6.08444 6.14850 6.18891 6.26933 6.51320 6.57134 6.65438 6.86449 7.03436 7.04835 7.37598 7.60124 8.02114 8.32966 8.54151 8.67473 8.99601 9.81010 11.17407 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.036713 B = 0.009763 C = 0.008597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.494422 B = 2867.343111 C = 3256.036504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.672 5.672 3 C 0.233 3.767 4 H 0.037 0.963 5 C -0.593 4.593 6 H 0.047 0.953 7 C 0.038 3.962 8 N -0.890 5.890 9 Si 1.065 2.935 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.290 1.290 13 C -0.066 4.066 14 C -0.114 4.114 15 C -0.123 4.123 16 C -0.117 4.117 17 C -0.105 4.105 18 C -0.123 4.123 19 C -0.122 4.122 20 H 0.048 0.952 21 H 0.054 0.946 22 H 0.001 0.999 23 H 0.322 0.678 24 H 0.279 0.721 25 H 0.119 0.881 26 H 0.111 0.889 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.111 0.889 31 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.219 2.891 -10.977 11.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.302 5.302 3 C 0.127 3.873 4 H 0.054 0.946 5 C -0.632 4.632 6 H 0.065 0.935 7 C -0.171 4.171 8 N -0.523 5.523 9 Si 0.894 3.106 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.217 1.217 13 C -0.068 4.068 14 C -0.133 4.133 15 C -0.141 4.141 16 C -0.117 4.117 17 C -0.162 4.162 18 C -0.141 4.141 19 C -0.141 4.141 20 H 0.067 0.933 21 H 0.073 0.927 22 H 0.019 0.981 23 H 0.140 0.860 24 H 0.090 0.910 25 H 0.137 0.863 26 H 0.130 0.870 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.129 0.871 31 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.307 2.447 -8.921 9.343 hybrid contribution -1.076 0.649 -2.345 2.661 sum -2.382 3.096 -11.267 11.925 Atomic orbital electron populations 1.22157 0.91610 1.00003 0.98473 1.61330 1.04041 1.16528 1.48295 1.18540 0.97143 0.85350 0.86306 0.94557 1.21696 0.90763 1.52655 0.98101 0.93462 1.25663 1.05187 0.92743 0.93466 1.70615 1.00760 1.41691 1.39274 0.83630 0.74539 0.76289 0.76183 1.20873 1.21536 1.21686 1.21281 0.93129 0.93847 0.98537 1.20962 0.99715 1.00445 0.92166 1.20918 1.00937 0.95590 0.96644 1.19707 1.01474 0.95200 0.95343 1.20683 1.01648 1.00667 0.93212 1.20899 1.01190 0.99059 0.92943 1.21081 1.00816 0.96173 0.96000 0.93297 0.92711 0.98066 0.85984 0.90990 0.86297 0.87046 0.91884 0.92199 0.92227 0.87103 0.86787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.52 60.06 0.63 1.20 16 2 N -0.67 -15.76 5.79 -116.50 -0.67 -16.43 16 3 C 0.23 5.81 1.63 -70.02 -0.11 5.70 16 4 H 0.04 0.98 7.07 -51.93 -0.37 0.61 16 5 C -0.59 -16.60 8.60 -34.44 -0.30 -16.90 16 6 H 0.05 1.34 7.74 -52.48 -0.41 0.94 16 7 C 0.04 1.09 5.41 -17.82 -0.10 0.99 16 8 N -0.89 -26.83 13.53 55.43 0.75 -26.08 16 9 Si 1.06 25.39 29.90 -169.99 -5.08 20.31 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 13 C -0.07 -1.44 4.60 -104.62 -0.48 -1.92 16 14 C -0.11 -2.27 8.95 -39.59 -0.35 -2.63 16 15 C -0.12 -2.10 9.70 -39.58 -0.38 -2.48 16 16 C -0.12 -1.89 5.88 -104.62 -0.62 -2.50 16 17 C -0.11 -1.27 10.01 36.01 0.36 -0.91 16 18 C -0.12 -2.09 9.70 -39.58 -0.38 -2.48 16 19 C -0.12 -2.42 9.67 -39.58 -0.38 -2.80 16 20 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 21 H 0.05 1.13 7.94 -51.93 -0.41 0.72 16 22 H 0.00 0.02 8.00 -51.93 -0.42 -0.40 16 23 H 0.32 7.11 6.87 -39.29 -0.27 6.84 16 24 H 0.28 8.40 6.65 -40.82 -0.27 8.13 16 25 H 0.12 2.33 6.95 -52.48 -0.36 1.97 16 26 H 0.11 1.61 8.06 -52.48 -0.42 1.18 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 29 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 30 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 31 H 0.11 2.17 7.99 -52.49 -0.42 1.75 16 LS Contribution 263.01 15.07 3.96 3.96 Total: -1.00 -30.31 263.01 -7.41 -37.72 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -4.25 Total: 5.25 kcal Atomic # 6 Polarization: -22.61 SS G_CDS: -2.12 Total: -24.73 kcal Atomic # 7 Polarization: -42.59 SS G_CDS: 0.08 Total: -42.52 kcal Atomic # 14 Polarization: 25.39 SS G_CDS: -5.08 Total: 20.31 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.31 -7.41 -37.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148523048.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.883 kcal (2) G-P(sol) polarization free energy of solvation -30.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds