Wall clock time and date at job start Mon Mar 30 2020 02:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46903 * 111.00296 * 2 1 4 4 H 1.09004 * 109.46866 * 37.40806 * 3 2 1 5 5 C 1.50694 * 109.47567 * 157.40963 * 3 2 1 6 6 H 1.08005 * 119.99477 * 114.52715 * 5 3 2 7 7 C 1.37873 * 120.00475 * 294.53095 * 5 3 2 8 8 N 1.31519 * 119.99475 * 358.62075 * 7 5 3 9 9 Si 1.86799 * 120.00346 * 178.61885 * 7 5 3 10 10 H 1.48504 * 109.47039 * 179.97438 * 9 7 5 11 11 H 1.48497 * 109.47019 * 300.00168 * 9 7 5 12 12 H 1.48497 * 109.46952 * 59.99797 * 9 7 5 13 13 C 1.50704 * 109.47151 * 277.41466 * 3 2 1 14 14 C 1.38231 * 119.99747 * 312.20815 * 13 3 2 15 15 C 1.38233 * 119.99794 * 179.78949 * 14 13 3 16 16 C 1.38239 * 119.99960 * 0.43850 * 15 14 13 17 17 C 1.50707 * 119.99891 * 179.83710 * 16 15 14 18 18 C 1.38236 * 120.00134 * 359.80892 * 16 15 14 19 19 C 1.38235 * 119.99690 * 359.97438 * 18 16 15 20 20 H 1.09002 * 109.47405 * 184.95857 * 1 2 3 21 21 H 1.09003 * 109.47131 * 304.95710 * 1 2 3 22 22 H 1.08997 * 109.47610 * 64.95470 * 1 2 3 23 23 H 1.00899 * 111.00152 * 236.04760 * 2 1 3 24 24 H 0.97000 * 120.00140 * 355.33979 * 8 7 5 25 25 H 1.08003 * 120.00148 * 359.97438 * 14 13 3 26 26 H 1.08003 * 120.00357 * 180.27289 * 15 14 13 27 27 H 1.08993 * 109.46831 * 269.97449 * 17 16 15 28 28 H 1.09001 * 109.47011 * 29.97358 * 17 16 15 29 29 H 1.09005 * 109.46742 * 149.97584 * 17 16 15 30 30 H 1.07995 * 120.00093 * 180.02562 * 18 16 15 31 31 H 1.07998 * 119.99587 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3636 2.0032 0.6243 5 6 3.4001 1.3703 0.5458 6 1 4.2282 1.6374 -0.0941 7 6 3.6282 1.0284 1.8618 8 7 2.6172 0.7295 2.6481 9 14 5.3729 0.9896 2.5279 10 1 5.3476 0.5957 3.9596 11 1 6.1752 0.0058 1.7574 12 1 5.9830 2.3371 2.3965 13 6 2.0043 1.9061 -1.4090 14 6 2.5252 1.1407 -2.4354 15 6 2.5294 1.6293 -3.7284 16 6 2.0209 2.8872 -3.9936 17 6 2.0289 3.4214 -5.4028 18 6 1.5047 3.6547 -2.9664 19 6 1.4964 3.1642 -1.6740 20 1 -0.3634 -1.0238 0.0888 21 1 -0.3633 0.5888 0.8423 22 1 -0.3634 0.4350 -0.9310 23 1 1.8305 -0.5261 -0.7814 24 1 1.7076 0.8148 2.3223 25 1 2.9262 0.1596 -2.2275 26 1 2.9324 1.0296 -4.5312 27 1 2.9594 3.9598 -5.5820 28 1 1.9475 2.5926 -6.1061 29 1 1.1853 4.0981 -5.5395 30 1 1.1071 4.6372 -3.1736 31 1 1.0935 3.7640 -0.8714 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000148523048.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:29 Heat of formation + Delta-G solvation = -5.652322 kcal Electronic energy + Delta-G solvation = -13086.695532 eV Core-core repulsion = 10945.497850 eV Total energy + Delta-G solvation = -2141.197682 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.48928 -37.49343 -34.14977 -33.33129 -31.79163 -29.58163 -26.81192 -25.55146 -24.04341 -23.11088 -21.48667 -18.92252 -17.68145 -16.35525 -15.99759 -15.74773 -15.46361 -14.98279 -14.50737 -14.45385 -14.24394 -14.23600 -13.49162 -13.02549 -12.80534 -12.70444 -12.56351 -12.43814 -11.94186 -11.80410 -11.66458 -10.81349 -10.48676 -9.81419 -9.31620 -9.00428 -8.44614 -6.24912 0.51181 0.52036 1.55322 1.63183 1.82268 2.62095 2.90185 3.25357 3.89291 3.95850 4.03097 4.16715 4.22507 4.42041 4.51148 4.60304 4.68500 4.82303 4.86835 4.88138 4.91659 4.99794 5.22747 5.32403 5.56249 5.69854 5.81169 5.96389 6.17942 6.21284 6.58182 6.78071 6.80298 7.63527 8.91530 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.036713 B = 0.009763 C = 0.008597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.494422 B = 2867.343111 C = 3256.036504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.689 5.689 3 C 0.240 3.760 4 H 0.003 0.997 5 C -0.603 4.603 6 H 0.036 0.964 7 C -0.011 4.011 8 N -0.917 5.917 9 Si 1.110 2.890 10 H -0.284 1.284 11 H -0.274 1.274 12 H -0.275 1.275 13 C -0.098 4.098 14 C -0.128 4.128 15 C -0.122 4.122 16 C -0.109 4.109 17 C -0.103 4.103 18 C -0.121 4.121 19 C -0.141 4.141 20 H 0.070 0.930 21 H 0.041 0.959 22 H 0.012 0.988 23 H 0.328 0.672 24 H 0.266 0.734 25 H 0.112 0.888 26 H 0.143 0.857 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.142 0.858 31 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.710 3.396 -13.474 14.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.320 5.320 3 C 0.133 3.867 4 H 0.021 0.979 5 C -0.642 4.642 6 H 0.054 0.946 7 C -0.214 4.214 8 N -0.552 5.552 9 Si 0.933 3.067 10 H -0.210 1.210 11 H -0.200 1.200 12 H -0.201 1.201 13 C -0.100 4.100 14 C -0.146 4.146 15 C -0.139 4.139 16 C -0.109 4.109 17 C -0.160 4.160 18 C -0.139 4.139 19 C -0.160 4.160 20 H 0.089 0.911 21 H 0.060 0.940 22 H 0.031 0.969 23 H 0.147 0.853 24 H 0.076 0.924 25 H 0.130 0.870 26 H 0.161 0.839 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.160 0.840 31 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.807 2.957 -11.444 11.847 hybrid contribution -1.291 0.537 -1.699 2.200 sum -2.098 3.493 -13.143 13.760 Atomic orbital electron populations 1.22097 0.89655 1.01209 0.98434 1.61084 1.06024 1.15953 1.48923 1.18189 0.94917 0.85647 0.87994 0.97947 1.22008 0.92144 1.51854 0.98163 0.94565 1.27028 1.08090 0.92043 0.94214 1.70735 1.00599 1.44217 1.39690 0.83032 0.70706 0.77331 0.75599 1.20973 1.20000 1.20078 1.21012 0.96331 0.95376 0.97238 1.20989 1.00252 1.00198 0.93182 1.21269 1.00221 0.96395 0.96053 1.20254 0.98895 0.94366 0.97350 1.20768 1.03132 1.01722 0.90352 1.21240 1.00492 1.00400 0.91751 1.21174 1.01567 0.95679 0.97548 0.91086 0.94037 0.96936 0.85308 0.92378 0.87030 0.83940 0.90477 0.90445 0.90498 0.84024 0.87491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.47 10.52 127.69 1.34 2.82 16 2 N -0.69 -33.22 5.79 -522.48 -3.03 -36.25 16 3 C 0.24 12.42 1.63 43.42 0.07 12.49 16 4 H 0.00 0.15 7.07 -2.39 -0.02 0.13 16 5 C -0.60 -34.74 8.60 25.60 0.22 -34.52 16 6 H 0.04 2.11 7.74 -2.91 -0.02 2.08 16 7 C -0.01 -0.66 5.41 84.65 0.46 -0.21 16 8 N -0.92 -57.01 13.53 21.45 0.29 -56.72 16 9 Si 1.11 51.63 29.90 68.60 2.05 53.69 16 10 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 11 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 12 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 13 C -0.10 -4.32 4.60 -19.86 -0.09 -4.41 16 14 C -0.13 -5.01 8.95 22.27 0.20 -4.81 16 15 C -0.12 -3.83 9.70 22.27 0.22 -3.61 16 16 C -0.11 -3.12 5.88 -19.86 -0.12 -3.23 16 17 C -0.10 -1.97 10.01 71.24 0.71 -1.26 16 18 C -0.12 -3.83 9.70 22.27 0.22 -3.61 16 19 C -0.14 -5.59 9.67 22.27 0.22 -5.38 16 20 H 0.07 2.55 8.14 -2.39 -0.02 2.54 16 21 H 0.04 1.77 7.94 -2.39 -0.02 1.76 16 22 H 0.01 0.47 8.00 -2.39 -0.02 0.45 16 23 H 0.33 14.80 6.87 -89.69 -0.62 14.19 16 24 H 0.27 16.76 6.65 -92.71 -0.62 16.15 16 25 H 0.11 4.41 6.95 -2.91 -0.02 4.39 16 26 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 27 H 0.08 1.33 8.14 -2.39 -0.02 1.32 16 28 H 0.08 1.25 8.09 -2.39 -0.02 1.24 16 29 H 0.08 1.25 8.09 -2.38 -0.02 1.23 16 30 H 0.14 3.55 8.06 -2.91 -0.02 3.52 16 31 H 0.11 4.23 7.99 -2.91 -0.02 4.21 16 Total: -1.00 -66.77 263.01 3.40 -63.37 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: 0.64 Total: 21.65 kcal Atomic # 6 Polarization: -49.18 SS G_CDS: 3.44 Total: -45.73 kcal Atomic # 7 Polarization: -90.23 SS G_CDS: -2.74 Total: -92.97 kcal Atomic # 14 Polarization: 51.63 SS G_CDS: 2.05 Total: 53.69 kcal Total: -66.77 3.40 -63.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148523048.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.720 kcal (2) G-P(sol) polarization free energy of solvation -66.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds