Wall clock time and date at job start Mon Mar 30 2020 02:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.38595 * 120.00318 * 66.76689 * 3 2 1 5 5 C 1.38612 * 119.99653 * 174.17872 * 4 3 2 6 6 H 1.08001 * 119.99121 * 152.21660 * 5 4 3 7 7 C 1.41057 * 120.00666 * 332.21612 * 5 4 3 8 8 N 1.30275 * 120.00128 * 341.25605 * 7 5 4 9 9 Si 1.86803 * 120.00246 * 161.25219 * 7 5 4 10 10 H 1.48499 * 109.46779 * 85.00030 * 9 7 5 11 11 H 1.48500 * 109.47187 * 204.99589 * 9 7 5 12 12 H 1.48491 * 109.47096 * 324.99902 * 9 7 5 13 13 C 1.50693 * 119.99884 * 354.18354 * 4 3 2 14 14 C 1.53002 * 109.46964 * 240.00189 * 13 4 3 15 15 C 1.52999 * 109.47046 * 180.02562 * 14 13 4 16 16 C 1.52996 * 109.47562 * 59.99611 * 15 14 13 17 17 C 1.53002 * 109.47258 * 300.00260 * 16 15 14 18 18 C 1.52996 * 109.47459 * 119.99914 * 13 4 3 19 19 H 1.08004 * 120.00143 * 246.76064 * 3 2 1 20 20 H 0.96994 * 120.00655 * 180.02562 * 8 7 5 21 21 H 1.09003 * 109.47214 * 359.97438 * 13 4 3 22 22 H 1.08998 * 109.47125 * 59.99744 * 14 13 4 23 23 H 1.09003 * 109.46662 * 299.99735 * 14 13 4 24 24 H 1.09003 * 109.47029 * 299.99334 * 15 14 13 25 25 H 1.09000 * 109.47167 * 179.97438 * 15 14 13 26 26 H 1.09003 * 109.47175 * 59.99812 * 16 15 14 27 27 H 1.08994 * 109.47296 * 180.02562 * 16 15 14 28 28 H 1.08996 * 109.47459 * 180.02562 * 17 16 15 29 29 H 1.09003 * 109.46662 * 299.99866 * 17 16 15 30 30 H 1.09003 * 109.47175 * 59.99648 * 18 13 4 31 31 H 1.09000 * 109.46903 * 300.00026 * 18 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2612 -0.4725 -1.1029 5 6 4.6419 -0.3612 -1.1536 6 1 5.2202 -1.0722 -1.7249 7 6 5.2916 0.6807 -0.4593 8 7 4.6190 1.7308 -0.0823 9 14 7.1164 0.5548 -0.0802 10 1 7.8986 1.0365 -1.2469 11 1 7.4340 1.3885 1.1070 12 1 7.4670 -0.8605 0.2007 13 6 2.5138 -1.1079 -2.2469 14 6 2.9941 -2.5487 -2.4322 15 6 2.2358 -3.1936 -3.5941 16 6 2.4963 -2.4003 -4.8761 17 6 2.0160 -0.9594 -4.6908 18 6 2.7738 -0.3147 -3.5291 19 1 3.1078 0.3699 0.8594 20 1 5.0657 2.4474 0.3948 21 1 1.4459 -1.1065 -2.0286 22 1 2.8089 -3.1137 -1.5187 23 1 4.0621 -2.5504 -2.6503 24 1 1.1678 -3.1918 -3.3764 25 1 2.5783 -4.2199 -3.7264 26 1 3.5644 -2.4020 -5.0938 27 1 1.9558 -2.8594 -5.7037 28 1 2.2012 -0.3944 -5.6042 29 1 0.9480 -0.9577 -4.4731 30 1 3.8418 -0.3164 -3.7472 31 1 2.4316 0.7117 -3.3970 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000207421012.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:56 Heat of formation + Delta-G solvation = -4.672580 kcal Electronic energy + Delta-G solvation = -13206.628705 eV Core-core repulsion = 11065.473507 eV Total energy + Delta-G solvation = -2141.155197 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.25835 -35.24094 -34.24337 -31.87328 -30.15323 -28.36100 -26.07927 -22.43719 -21.92876 -19.92099 -19.18597 -16.77822 -15.65742 -14.87610 -14.28604 -13.88368 -13.57081 -13.20726 -12.92105 -12.22764 -11.86723 -11.71080 -11.63208 -11.58788 -11.26700 -11.18073 -10.68818 -10.66787 -10.50374 -10.34333 -10.08866 -9.60003 -9.52260 -9.22369 -9.13999 -7.38856 -6.94820 -4.50477 2.78819 3.01832 3.04572 3.32497 3.82358 4.52866 4.67716 5.23202 5.24788 5.32415 5.46005 5.85786 5.89308 6.06090 6.08970 6.10304 6.17420 6.26838 6.43657 6.46865 6.58845 6.65989 6.79073 6.84436 6.86877 6.99445 7.12235 7.18649 7.79801 8.12740 8.50047 8.75223 8.90897 9.51656 10.01035 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.026273 B = 0.012403 C = 0.009622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.480661 B = 2256.905241 C = 2909.369932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C 0.285 3.715 3 C -0.330 4.330 4 C 0.127 3.873 5 C -0.437 4.437 6 H 0.082 0.918 7 C 0.082 3.918 8 N -0.749 5.749 9 Si 0.902 3.098 10 H -0.268 1.268 11 H -0.275 1.275 12 H -0.258 1.258 13 C -0.060 4.060 14 C -0.105 4.105 15 C -0.120 4.120 16 C -0.115 4.115 17 C -0.121 4.121 18 C -0.099 4.099 19 H 0.126 0.874 20 H 0.286 0.714 21 H 0.057 0.943 22 H 0.057 0.943 23 H 0.065 0.935 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.521 -4.546 -6.218 8.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.267 5.267 2 C -0.017 4.017 3 C -0.358 4.358 4 C 0.120 3.880 5 C -0.465 4.465 6 H 0.100 0.900 7 C -0.143 4.143 8 N -0.371 5.371 9 Si 0.725 3.275 10 H -0.193 1.193 11 H -0.200 1.200 12 H -0.181 1.181 13 C -0.079 4.079 14 C -0.142 4.142 15 C -0.157 4.157 16 C -0.153 4.153 17 C -0.158 4.158 18 C -0.136 4.136 19 H 0.144 0.856 20 H 0.097 0.903 21 H 0.076 0.924 22 H 0.076 0.924 23 H 0.084 0.916 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.785 -4.296 -6.090 7.956 hybrid contribution 1.316 0.236 0.300 1.370 sum 4.100 -4.061 -5.790 8.175 Atomic orbital electron populations 1.80952 1.13577 1.19869 1.12258 1.26905 0.93832 0.90245 0.90730 1.19098 0.81547 1.32384 1.02770 1.18830 0.92875 0.87881 0.88411 1.19221 0.92336 1.09724 1.25260 0.90034 1.26140 1.00707 0.94172 0.93249 1.69626 1.38897 1.04211 1.24360 0.86430 0.82162 0.79973 0.78910 1.19287 1.20004 1.18147 1.20381 0.98811 0.94026 0.94643 1.21492 0.99981 0.95679 0.97061 1.21569 1.00394 0.98186 0.95594 1.21502 1.00883 0.95835 0.97066 1.21575 1.00019 0.95687 0.98543 1.21428 1.00407 0.98630 0.93152 0.85628 0.90299 0.92419 0.92410 0.91595 0.92634 0.92817 0.92155 0.93104 0.92798 0.92719 0.91416 0.92448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.58 -15.58 18.54 41.83 0.78 -14.81 16 2 C 0.28 7.45 13.83 -22.48 -0.31 7.14 16 3 C -0.33 -8.40 8.61 -37.53 -0.32 -8.72 16 4 C 0.13 2.99 4.60 -104.36 -0.48 2.51 16 5 C -0.44 -10.06 8.02 -38.38 -0.31 -10.36 16 6 H 0.08 1.76 6.95 -52.49 -0.36 1.40 16 7 C 0.08 1.85 5.04 -17.14 -0.09 1.76 16 8 N -0.75 -17.89 11.29 55.61 0.63 -17.26 16 9 Si 0.90 16.83 29.61 -169.99 -5.03 11.79 16 10 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 11 H -0.28 -5.12 7.11 56.52 0.40 -4.72 16 12 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 13 C -0.06 -1.24 2.21 -91.78 -0.20 -1.44 16 14 C -0.10 -1.87 5.02 -26.73 -0.13 -2.00 16 15 C -0.12 -1.82 5.92 -26.73 -0.16 -1.98 16 16 C -0.12 -1.64 5.92 -26.73 -0.16 -1.80 16 17 C -0.12 -1.90 5.92 -26.76 -0.16 -2.06 16 18 C -0.10 -1.86 5.01 -26.76 -0.13 -2.00 16 19 H 0.13 3.32 6.59 -52.48 -0.35 2.98 16 20 H 0.29 6.20 8.28 -40.82 -0.34 5.86 16 21 H 0.06 1.31 6.44 -51.93 -0.33 0.97 16 22 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 23 H 0.07 1.15 7.08 -51.93 -0.37 0.79 16 24 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.07 1.27 7.74 -51.93 -0.40 0.87 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 259.08 15.07 3.90 3.90 Total: -1.00 -26.06 259.08 -6.51 -32.57 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -4.33 Total: 2.76 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: -2.45 Total: -18.95 kcal Atomic # 7 Polarization: -33.47 SS G_CDS: 1.40 Total: -32.07 kcal Atomic # 14 Polarization: 16.83 SS G_CDS: -5.03 Total: 11.79 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -26.06 -6.51 -32.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000207421012.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.895 kcal (2) G-P(sol) polarization free energy of solvation -26.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds