Wall clock time and date at job start Mon Mar 30 2020 02:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.38595 * 120.00318 * 66.76689 * 3 2 1 5 5 C 1.38612 * 119.99653 * 174.17872 * 4 3 2 6 6 H 1.08001 * 119.99121 * 152.21660 * 5 4 3 7 7 C 1.41057 * 120.00666 * 332.21612 * 5 4 3 8 8 N 1.30275 * 120.00128 * 341.25605 * 7 5 4 9 9 Si 1.86803 * 120.00246 * 161.25219 * 7 5 4 10 10 H 1.48499 * 109.46779 * 85.00030 * 9 7 5 11 11 H 1.48500 * 109.47187 * 204.99589 * 9 7 5 12 12 H 1.48491 * 109.47096 * 324.99902 * 9 7 5 13 13 C 1.50693 * 119.99884 * 354.18354 * 4 3 2 14 14 C 1.53002 * 109.46964 * 240.00189 * 13 4 3 15 15 C 1.52999 * 109.47046 * 180.02562 * 14 13 4 16 16 C 1.52996 * 109.47562 * 59.99611 * 15 14 13 17 17 C 1.53002 * 109.47258 * 300.00260 * 16 15 14 18 18 C 1.52996 * 109.47459 * 119.99914 * 13 4 3 19 19 H 1.08004 * 120.00143 * 246.76064 * 3 2 1 20 20 H 0.96994 * 120.00655 * 180.02562 * 8 7 5 21 21 H 1.09003 * 109.47214 * 359.97438 * 13 4 3 22 22 H 1.08998 * 109.47125 * 59.99744 * 14 13 4 23 23 H 1.09003 * 109.46662 * 299.99735 * 14 13 4 24 24 H 1.09003 * 109.47029 * 299.99334 * 15 14 13 25 25 H 1.09000 * 109.47167 * 179.97438 * 15 14 13 26 26 H 1.09003 * 109.47175 * 59.99812 * 16 15 14 27 27 H 1.08994 * 109.47296 * 180.02562 * 16 15 14 28 28 H 1.08996 * 109.47459 * 180.02562 * 17 16 15 29 29 H 1.09003 * 109.46662 * 299.99866 * 17 16 15 30 30 H 1.09003 * 109.47175 * 59.99648 * 18 13 4 31 31 H 1.09000 * 109.46903 * 300.00026 * 18 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2612 -0.4725 -1.1029 5 6 4.6419 -0.3612 -1.1536 6 1 5.2202 -1.0722 -1.7249 7 6 5.2916 0.6807 -0.4593 8 7 4.6190 1.7308 -0.0823 9 14 7.1164 0.5548 -0.0802 10 1 7.8986 1.0365 -1.2469 11 1 7.4340 1.3885 1.1070 12 1 7.4670 -0.8605 0.2007 13 6 2.5138 -1.1079 -2.2469 14 6 2.9941 -2.5487 -2.4322 15 6 2.2358 -3.1936 -3.5941 16 6 2.4963 -2.4003 -4.8761 17 6 2.0160 -0.9594 -4.6908 18 6 2.7738 -0.3147 -3.5291 19 1 3.1078 0.3699 0.8594 20 1 5.0657 2.4474 0.3948 21 1 1.4459 -1.1065 -2.0286 22 1 2.8089 -3.1137 -1.5187 23 1 4.0621 -2.5504 -2.6503 24 1 1.1678 -3.1918 -3.3764 25 1 2.5783 -4.2199 -3.7264 26 1 3.5644 -2.4020 -5.0938 27 1 1.9558 -2.8594 -5.7037 28 1 2.2012 -0.3944 -5.6042 29 1 0.9480 -0.9577 -4.4731 30 1 3.8418 -0.3164 -3.7472 31 1 2.4316 0.7117 -3.3970 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000207421012.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:56 Heat of formation + Delta-G solvation = -16.930258 kcal Electronic energy + Delta-G solvation = -13207.160238 eV Core-core repulsion = 11065.473507 eV Total energy + Delta-G solvation = -2141.686730 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.76258 -37.05765 -36.15514 -33.55868 -31.51145 -29.97119 -27.97845 -23.98897 -23.29241 -21.61235 -20.61956 -18.65156 -17.29011 -16.60239 -15.82614 -15.38709 -14.93908 -14.69835 -14.50775 -13.98525 -13.67634 -13.41116 -13.32153 -12.97999 -12.92145 -12.70222 -12.46921 -12.08770 -11.94296 -11.85500 -11.64107 -11.16166 -11.07443 -10.84346 -10.70000 -9.26952 -8.73125 -6.42774 1.09410 1.48611 1.60409 1.69254 2.23184 2.46907 2.80797 3.42241 3.92318 4.02799 4.08060 4.43515 4.44850 4.53106 4.67590 4.75368 4.75771 4.82694 4.90501 5.13752 5.17960 5.21860 5.34193 5.39309 5.42210 5.45837 5.62842 5.68354 5.95664 6.16778 6.62806 6.85854 7.04131 7.49573 8.24823 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.026273 B = 0.012403 C = 0.009622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.480661 B = 2256.905241 C = 2909.369932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.609 5.609 2 C 0.285 3.715 3 C -0.369 4.369 4 C 0.125 3.875 5 C -0.441 4.441 6 H 0.100 0.900 7 C 0.043 3.957 8 N -0.777 5.777 9 Si 0.977 3.023 10 H -0.257 1.257 11 H -0.274 1.274 12 H -0.251 1.251 13 C -0.060 4.060 14 C -0.100 4.100 15 C -0.117 4.117 16 C -0.111 4.111 17 C -0.117 4.117 18 C -0.094 4.094 19 H 0.110 0.890 20 H 0.295 0.705 21 H 0.030 0.970 22 H 0.047 0.953 23 H 0.074 0.926 24 H 0.045 0.955 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.785 -5.621 -7.793 11.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.297 5.297 2 C -0.014 4.014 3 C -0.397 4.397 4 C 0.118 3.882 5 C -0.468 4.468 6 H 0.118 0.882 7 C -0.180 4.180 8 N -0.398 5.398 9 Si 0.797 3.203 10 H -0.181 1.181 11 H -0.199 1.199 12 H -0.175 1.175 13 C -0.079 4.079 14 C -0.138 4.138 15 C -0.154 4.154 16 C -0.148 4.148 17 C -0.155 4.155 18 C -0.132 4.132 19 H 0.127 0.873 20 H 0.106 0.894 21 H 0.048 0.952 22 H 0.066 0.934 23 H 0.092 0.908 24 H 0.064 0.936 25 H 0.098 0.902 26 H 0.090 0.910 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 5.029 -5.373 -7.672 10.631 hybrid contribution 0.729 0.641 0.784 1.247 sum 5.757 -4.732 -6.888 10.148 Atomic orbital electron populations 1.80909 1.13970 1.21811 1.12968 1.27092 0.94013 0.89961 0.90348 1.18979 0.81172 1.35902 1.03643 1.19229 0.93629 0.86794 0.88579 1.19654 0.92314 1.09809 1.25003 0.88178 1.27089 1.05409 0.93345 0.92166 1.69699 1.41244 1.05008 1.23860 0.85281 0.75978 0.80161 0.78866 1.18123 1.19885 1.17458 1.20373 0.96814 0.96284 0.94441 1.21455 1.00720 0.93513 0.98111 1.21559 0.99438 0.99572 0.94871 1.21500 1.01927 0.94183 0.97211 1.21554 0.98906 0.97220 0.97788 1.21375 1.00973 0.97179 0.93637 0.87266 0.89382 0.95167 0.93386 0.90778 0.93587 0.90165 0.90997 0.90520 0.90698 0.93733 0.91036 0.95151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.61 -34.02 18.54 19.00 0.35 -33.67 16 2 C 0.29 15.62 13.83 88.33 1.22 16.84 16 3 C -0.37 -19.51 8.61 23.60 0.20 -19.31 16 4 C 0.12 5.96 4.60 -19.69 -0.09 5.87 16 5 C -0.44 -19.86 8.02 23.05 0.18 -19.67 16 6 H 0.10 4.09 6.95 -2.91 -0.02 4.07 16 7 C 0.04 1.90 5.04 85.62 0.43 2.33 16 8 N -0.78 -37.09 11.29 22.02 0.25 -36.84 16 9 Si 0.98 32.81 29.61 68.60 2.03 34.84 16 10 H -0.26 -8.22 7.11 99.48 0.71 -7.51 16 11 H -0.27 -9.14 7.11 99.48 0.71 -8.43 16 12 H -0.25 -8.18 7.11 99.48 0.71 -7.47 16 13 C -0.06 -2.52 2.21 -11.54 -0.03 -2.54 16 14 C -0.10 -3.45 5.02 30.59 0.15 -3.30 16 15 C -0.12 -3.25 5.92 30.59 0.18 -3.07 16 16 C -0.11 -2.76 5.92 30.59 0.18 -2.58 16 17 C -0.12 -3.48 5.92 30.58 0.18 -3.30 16 18 C -0.09 -3.51 5.01 30.58 0.15 -3.36 16 19 H 0.11 6.05 6.59 -2.91 -0.02 6.03 16 20 H 0.29 12.70 8.28 -92.71 -0.77 11.93 16 21 H 0.03 1.41 6.44 -2.39 -0.02 1.40 16 22 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 23 H 0.07 2.41 7.08 -2.39 -0.02 2.39 16 24 H 0.05 1.36 8.14 -2.39 -0.02 1.35 16 25 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.07 1.91 8.14 -2.39 -0.02 1.90 16 29 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.07 2.58 7.74 -2.39 -0.02 2.56 16 31 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -56.72 259.08 6.52 -50.20 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 1.11 Total: 17.53 kcal Atomic # 6 Polarization: -34.85 SS G_CDS: 2.78 Total: -32.07 kcal Atomic # 7 Polarization: -71.11 SS G_CDS: 0.60 Total: -70.50 kcal Atomic # 14 Polarization: 32.81 SS G_CDS: 2.03 Total: 34.84 kcal Total: -56.72 6.52 -50.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000207421012.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.270 kcal (2) G-P(sol) polarization free energy of solvation -56.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds