Wall clock time and date at job start Mon Mar 30 2020 02:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00016 * 2 1 4 4 H 1.48497 * 109.46889 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47345 * 239.99901 * 3 2 1 6 6 H 1.48504 * 109.47084 * 120.00226 * 3 2 1 7 7 C 1.37884 * 120.00167 * 180.02562 * 2 1 3 8 8 H 1.07989 * 120.00047 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99533 * 359.97438 * 7 2 1 10 10 H 1.08998 * 110.64757 * 59.30211 * 9 7 2 11 11 C 1.54595 * 110.72968 * 296.14619 * 9 7 2 12 12 C 1.53989 * 105.14276 * 219.68805 * 11 9 7 13 13 N 1.47894 * 107.05888 * 358.77345 * 12 11 9 14 14 C 1.46903 * 111.00260 * 145.84411 * 13 12 11 15 15 C 1.52997 * 109.47521 * 183.74972 * 14 13 12 16 16 F 1.39900 * 109.46875 * 305.83284 * 15 14 13 17 17 F 1.39891 * 109.47395 * 65.83255 * 15 14 13 18 18 C 1.48728 * 105.94470 * 25.20415 * 13 12 11 19 19 H 0.97000 * 119.99719 * 179.97438 * 1 2 3 20 20 H 1.09003 * 110.30477 * 338.60472 * 11 9 7 21 21 H 1.09006 * 110.30828 * 100.76800 * 11 9 7 22 22 H 1.08999 * 109.91651 * 118.12610 * 12 11 9 23 23 H 1.09001 * 109.91721 * 239.22155 * 12 11 9 24 24 H 1.09007 * 109.47067 * 303.74866 * 14 13 12 25 25 H 1.09004 * 109.46762 * 63.74384 * 14 13 12 26 26 H 1.08999 * 109.47198 * 185.83710 * 15 14 13 27 27 H 1.09003 * 110.84001 * 202.57444 * 18 13 12 28 28 H 1.09001 * 110.58871 * 79.38179 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1029 1.6965 -1.2125 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6076 -2.5714 -0.8773 11 6 0.4261 -2.6547 1.2977 12 6 0.5690 -4.1369 1.6898 13 7 1.4016 -4.7821 0.6517 14 6 2.2458 -5.8346 1.2327 15 6 3.1576 -6.4135 0.1490 16 9 2.3822 -6.8354 -0.9363 17 9 4.0589 -5.4315 -0.2757 18 6 2.2307 -3.6979 0.0608 19 1 -0.4850 -0.8401 -0.0004 20 1 0.8310 -2.0151 2.0820 21 1 -0.6202 -2.4114 1.1125 22 1 1.0571 -4.2187 2.6610 23 1 -0.4135 -4.6074 1.7275 24 1 2.8546 -5.4121 2.0321 25 1 1.6138 -6.6256 1.6366 26 1 3.7090 -7.2623 0.5534 27 1 2.5692 -3.9697 -0.9390 28 1 3.0788 -3.4690 0.7062 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000212575337.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:58 Heat of formation + Delta-G solvation = -129.332085 kcal Electronic energy + Delta-G solvation = -13912.863049 eV Core-core repulsion = 11212.072681 eV Total energy + Delta-G solvation = -2700.790369 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.83915 -47.84621 -39.82579 -35.65734 -32.87910 -30.14110 -28.97269 -26.23180 -23.70826 -21.92590 -21.65756 -19.09542 -18.39836 -18.16255 -17.31882 -16.50781 -15.86644 -15.63235 -15.31206 -14.89302 -14.37597 -14.21392 -14.05085 -13.68436 -13.41758 -13.15582 -12.80440 -12.39223 -12.30826 -11.94507 -11.82905 -11.51828 -11.30737 -10.60542 -10.50591 -9.48796 -8.61643 -6.34645 1.52559 1.60514 1.80119 2.56291 2.87483 3.01783 3.18890 3.39438 3.65918 3.83927 4.04008 4.20959 4.25774 4.40482 4.51411 4.62994 4.70374 4.84104 5.00707 5.08579 5.31315 5.57018 5.68258 6.00856 6.12068 6.19955 6.63475 7.46398 8.77543 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.050276 B = 0.009314 C = 0.008439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.794480 B = 3005.561607 C = 3317.146540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.029 4.029 3 Si 1.115 2.885 4 H -0.283 1.283 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.612 4.612 8 H 0.044 0.956 9 C 0.021 3.979 10 H -0.007 1.007 11 C -0.114 4.114 12 C 0.050 3.950 13 N -0.532 5.532 14 C -0.012 4.012 15 C 0.257 3.743 16 F -0.216 7.216 17 F -0.225 7.225 18 C 0.066 3.934 19 H 0.261 0.739 20 H 0.042 0.958 21 H 0.040 0.960 22 H 0.058 0.942 23 H 0.087 0.913 24 H 0.073 0.927 25 H 0.131 0.869 26 H 0.167 0.833 27 H 0.058 0.942 28 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.765 -12.489 4.803 14.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.227 4.227 3 Si 0.936 3.064 4 H -0.208 1.208 5 H -0.199 1.199 6 H -0.195 1.195 7 C -0.650 4.650 8 H 0.062 0.938 9 C 0.002 3.998 10 H 0.011 0.989 11 C -0.153 4.153 12 C -0.078 4.078 13 N -0.257 5.257 14 C -0.141 4.141 15 C 0.204 3.796 16 F -0.198 7.198 17 F -0.207 7.207 18 C -0.061 4.061 19 H 0.072 0.928 20 H 0.061 0.939 21 H 0.059 0.941 22 H 0.076 0.924 23 H 0.106 0.894 24 H 0.091 0.909 25 H 0.149 0.851 26 H 0.184 0.816 27 H 0.077 0.923 28 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 5.247 -11.122 4.385 13.056 hybrid contribution 0.425 -1.071 0.247 1.178 sum 5.672 -12.192 4.632 14.223 Atomic orbital electron populations 1.70895 1.07763 1.30477 1.48088 1.27251 0.96638 1.06233 0.92616 0.82965 0.74149 0.71431 0.77831 1.20828 1.19866 1.19498 1.22284 0.94060 0.92856 1.55778 0.93766 1.19716 0.93645 0.93661 0.92802 0.98912 1.22415 0.99001 0.95033 0.98831 1.22811 0.98445 0.93439 0.93086 1.64804 1.20823 1.10779 1.29269 1.23624 0.97045 0.97664 0.95722 1.22578 0.84234 0.89755 0.83023 1.92951 1.77134 1.90375 1.59294 1.92961 1.69503 1.66490 1.91708 1.23113 0.94549 0.90325 0.98159 0.92808 0.93915 0.94119 0.92399 0.89449 0.90856 0.85060 0.81578 0.92343 0.94524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.83 13.45 21.45 0.29 -57.54 15 2 C -0.03 -1.68 5.34 84.66 0.45 -1.22 15 3 Si 1.11 50.96 29.90 68.60 2.05 53.01 15 4 H -0.28 -12.87 7.11 99.48 0.71 -12.17 15 5 H -0.27 -11.76 7.11 99.48 0.71 -11.06 15 6 H -0.27 -11.42 7.11 99.48 0.71 -10.71 15 7 C -0.61 -35.57 8.40 25.60 0.22 -35.35 15 8 H 0.04 2.55 7.78 -2.92 -0.02 2.52 15 9 C 0.02 1.11 2.57 -10.33 -0.03 1.09 15 10 H -0.01 -0.43 8.00 -2.39 -0.02 -0.45 15 11 C -0.11 -5.38 5.47 31.47 0.17 -5.21 15 12 C 0.05 1.78 6.70 86.45 0.58 2.36 15 13 N -0.53 -19.52 5.17 -882.47 -4.56 -24.08 15 14 C -0.01 -0.29 5.22 86.30 0.45 0.16 15 15 C 0.26 6.21 5.39 71.98 0.39 6.60 15 16 F -0.22 -6.57 17.15 44.97 0.77 -5.80 15 17 F -0.23 -7.15 14.38 44.97 0.65 -6.50 15 18 C 0.07 2.95 4.26 86.61 0.37 3.32 15 19 H 0.26 16.27 5.66 -92.71 -0.52 15.74 15 20 H 0.04 2.13 7.84 -2.39 -0.02 2.11 15 21 H 0.04 1.98 7.07 -2.38 -0.02 1.97 15 22 H 0.06 1.80 7.67 -2.39 -0.02 1.79 15 23 H 0.09 2.81 8.14 -2.39 -0.02 2.79 15 24 H 0.07 1.71 7.98 -2.38 -0.02 1.69 15 25 H 0.13 2.44 8.14 -2.38 -0.02 2.42 15 26 H 0.17 2.08 8.14 -2.39 -0.02 2.06 15 27 H 0.06 2.73 7.11 -2.39 -0.02 2.71 15 28 H 0.04 1.65 7.63 -2.39 -0.02 1.63 15 Total: -1.00 -69.31 235.91 3.18 -66.13 By element: Atomic # 1 Polarization: 1.65 SS G_CDS: 1.39 Total: 3.04 kcal Atomic # 6 Polarization: -30.86 SS G_CDS: 2.60 Total: -28.26 kcal Atomic # 7 Polarization: -77.35 SS G_CDS: -4.27 Total: -81.62 kcal Atomic # 9 Polarization: -13.72 SS G_CDS: 1.42 Total: -12.30 kcal Atomic # 14 Polarization: 50.96 SS G_CDS: 2.05 Total: 53.01 kcal Total: -69.31 3.18 -66.13 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212575337.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.204 kcal (2) G-P(sol) polarization free energy of solvation -69.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds