Wall clock time and date at job start Mon Mar 30 2020 02:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48500 * 109.47353 * 269.99835 * 3 2 1 5 5 H 1.48494 * 109.47031 * 30.00382 * 3 2 1 6 6 H 1.48504 * 109.46680 * 150.00084 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 0.27482 * 7 2 1 9 9 C 1.50706 * 119.99394 * 179.97438 * 7 2 1 10 10 C 1.53929 * 113.73546 * 278.76330 * 9 7 2 11 11 N 1.48181 * 86.10389 * 221.96025 * 10 9 7 12 12 C 1.46904 * 111.07114 * 137.51831 * 11 10 9 13 13 C 1.53007 * 109.46668 * 90.56996 * 12 11 10 14 14 C 1.53002 * 109.46582 * 180.02562 * 13 12 11 15 15 F 1.39902 * 109.46920 * 175.00158 * 14 13 12 16 16 F 1.39906 * 109.47295 * 294.99422 * 14 13 12 17 17 C 1.47959 * 90.79999 * 24.60296 * 11 10 9 18 18 H 0.97005 * 119.99656 * 359.97438 * 1 2 3 19 19 H 1.09004 * 112.93881 * 50.33534 * 9 7 2 20 20 H 1.09002 * 113.76143 * 336.24436 * 10 9 7 21 21 H 1.09000 * 113.75970 * 107.60487 * 10 9 7 22 22 H 1.09001 * 109.47248 * 210.56324 * 12 11 10 23 23 H 1.09000 * 109.47229 * 330.57166 * 12 11 10 24 24 H 1.09001 * 109.46737 * 299.99640 * 13 12 11 25 25 H 1.09000 * 109.47157 * 60.00126 * 13 12 11 26 26 H 1.08998 * 109.47337 * 54.99732 * 14 13 12 27 27 H 1.08999 * 113.75755 * 221.09101 * 17 11 10 28 28 H 1.08993 * 113.76352 * 89.71798 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0054 9 6 3.5115 -1.1942 -0.0011 10 6 4.1305 -0.9792 -1.3939 11 7 5.0965 -2.0377 -1.0167 12 6 5.3264 -2.9649 -2.1327 13 6 6.5026 -2.4672 -2.9752 14 6 6.7417 -3.4326 -4.1379 15 9 7.7408 -2.9196 -4.9720 16 9 7.1449 -4.6751 -3.6369 17 6 4.1309 -2.6026 -0.0484 18 1 -0.4850 0.8401 0.0004 19 1 3.9366 -0.5536 0.7716 20 1 3.4711 -1.2589 -2.2156 21 1 4.5834 0.0034 -1.5263 22 1 5.5542 -3.9561 -1.7405 23 1 4.4314 -3.0163 -2.7527 24 1 6.2748 -1.4760 -3.3674 25 1 7.3976 -2.4158 -2.3552 26 1 5.8195 -3.5520 -4.7065 27 1 4.5842 -2.9147 0.8925 28 1 3.4717 -3.3582 -0.4755 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000212575656.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:23 Heat of formation + Delta-G solvation = -101.156307 kcal Electronic energy + Delta-G solvation = -13295.913801 eV Core-core repulsion = 10596.345225 eV Total energy + Delta-G solvation = -2699.568576 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.89414 -47.91645 -40.59078 -35.19729 -34.10626 -30.32462 -27.05103 -26.87006 -24.15378 -22.32661 -20.42506 -19.11963 -18.50023 -18.11084 -17.33792 -16.65902 -16.36311 -15.61360 -15.23634 -14.91354 -14.74756 -14.31163 -14.17401 -13.67498 -13.46836 -13.17791 -12.90188 -12.66846 -12.05078 -11.89888 -11.74611 -11.55910 -11.26900 -11.09745 -10.70220 -9.69817 -8.29021 -6.34461 1.37891 1.40820 1.51536 2.37229 2.72770 3.04248 3.20704 3.51878 3.59270 3.70527 4.09186 4.16036 4.26418 4.41263 4.53598 4.65022 4.70924 4.86415 4.88954 4.99146 5.06867 5.43737 5.50724 5.65232 6.22390 6.29491 6.71694 7.32425 8.87088 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.057291 B = 0.007174 C = 0.006835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.614698 B = 3902.023471 C = 4095.626960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.016 3.984 3 Si 0.941 3.059 4 H -0.262 1.262 5 H -0.290 1.290 6 H -0.245 1.245 7 C -0.516 4.516 8 H 0.034 0.966 9 C -0.023 4.023 10 C -0.001 4.001 11 N -0.484 5.484 12 C 0.020 3.980 13 C -0.154 4.154 14 C 0.263 3.737 15 F -0.217 7.217 16 F -0.218 7.218 17 C 0.021 3.979 18 H 0.266 0.734 19 H 0.056 0.944 20 H 0.063 0.937 21 H 0.074 0.926 22 H 0.081 0.919 23 H 0.052 0.948 24 H 0.098 0.902 25 H 0.087 0.913 26 H 0.139 0.861 27 H 0.086 0.914 28 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.872 -3.868 -7.355 15.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.181 4.181 3 Si 0.765 3.235 4 H -0.187 1.187 5 H -0.216 1.216 6 H -0.169 1.169 7 C -0.554 4.554 8 H 0.053 0.947 9 C -0.042 4.042 10 C -0.130 4.130 11 N -0.206 5.206 12 C -0.109 4.109 13 C -0.192 4.192 14 C 0.210 3.790 15 F -0.199 7.199 16 F -0.199 7.199 17 C -0.108 4.108 18 H 0.075 0.925 19 H 0.074 0.926 20 H 0.082 0.918 21 H 0.093 0.907 22 H 0.099 0.901 23 H 0.070 0.930 24 H 0.116 0.884 25 H 0.106 0.894 26 H 0.157 0.843 27 H 0.105 0.895 28 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 13.432 -3.625 -7.165 15.649 hybrid contribution -0.901 0.322 -0.275 0.996 sum 12.531 -3.303 -7.440 14.943 Atomic orbital electron populations 1.70060 1.08338 1.28172 1.52366 1.25874 0.95326 1.03141 0.93787 0.85801 0.79614 0.78574 0.79537 1.18658 1.21613 1.16872 1.21217 0.90863 0.93007 1.50278 0.94739 1.20901 0.93614 0.95284 0.94430 1.24304 0.92951 0.96321 0.99395 1.68375 1.33467 1.08457 1.10352 1.22569 0.97306 0.97353 0.93710 1.22445 1.00824 0.99821 0.96129 1.22150 0.88905 0.78317 0.89670 1.92956 1.65955 1.87360 1.73597 1.92956 1.92620 1.45541 1.88815 1.23787 0.92776 0.97168 0.97048 0.92484 0.92570 0.91839 0.90734 0.90083 0.92951 0.88396 0.89448 0.84330 0.89522 0.92182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.86 13.96 21.45 0.30 -57.56 15 2 C 0.02 0.92 5.47 84.66 0.46 1.38 15 3 Si 0.94 42.59 26.96 68.60 1.85 44.44 15 4 H -0.26 -11.21 7.11 99.48 0.71 -10.50 15 5 H -0.29 -13.13 7.11 99.48 0.71 -12.42 15 6 H -0.25 -10.37 6.29 99.48 0.63 -9.75 15 7 C -0.52 -28.28 9.33 25.60 0.24 -28.05 15 8 H 0.03 2.10 8.06 -2.91 -0.02 2.08 15 9 C -0.02 -1.02 2.90 -10.89 -0.03 -1.05 15 10 C 0.00 -0.02 6.70 86.37 0.58 0.55 15 11 N -0.48 -16.38 6.16 -907.37 -5.59 -21.97 15 12 C 0.02 0.53 4.71 86.30 0.41 0.93 15 13 C -0.15 -3.44 5.75 30.60 0.18 -3.26 15 14 C 0.26 5.22 5.29 71.98 0.38 5.60 15 15 F -0.22 -4.96 17.34 44.97 0.78 -4.18 15 16 F -0.22 -5.14 17.02 44.97 0.77 -4.38 15 17 C 0.02 0.78 7.50 86.41 0.65 1.42 15 18 H 0.27 15.19 8.31 -92.70 -0.77 14.42 15 19 H 0.06 2.54 6.70 -2.39 -0.02 2.52 15 20 H 0.06 2.47 7.44 -2.39 -0.02 2.46 15 21 H 0.07 2.70 7.96 -2.39 -0.02 2.68 15 22 H 0.08 2.09 7.88 -2.39 -0.02 2.07 15 23 H 0.05 1.39 7.39 -2.39 -0.02 1.37 15 24 H 0.10 2.12 8.14 -2.39 -0.02 2.10 15 25 H 0.09 2.05 8.14 -2.39 -0.02 2.03 15 26 H 0.14 1.96 8.14 -2.39 -0.02 1.94 15 27 H 0.09 2.98 8.14 -2.39 -0.02 2.96 15 28 H 0.06 2.27 7.87 -2.39 -0.02 2.25 15 Total: -1.00 -61.93 243.75 2.03 -59.90 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: 1.06 Total: 6.21 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: 2.86 Total: -22.47 kcal Atomic # 7 Polarization: -74.24 SS G_CDS: -5.29 Total: -79.53 kcal Atomic # 9 Polarization: -10.10 SS G_CDS: 1.54 Total: -8.55 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 1.85 Total: 44.44 kcal Total: -61.93 2.03 -59.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212575656.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.257 kcal (2) G-P(sol) polarization free energy of solvation -61.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds