Wall clock time and date at job start Mon Mar 30 2020 02:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34510 * 126.53866 * 2 1 4 4 N 1.34288 * 108.42873 * 180.02562 * 3 2 1 5 5 C 1.31615 * 109.37045 * 359.97438 * 4 3 2 6 6 N 1.37990 * 143.59496 * 180.02562 * 5 4 3 7 7 H 0.97002 * 126.17457 * 0.02562 * 6 5 4 8 8 C 1.39122 * 107.64643 * 179.29261 * 6 5 4 9 9 C 1.40259 * 126.28478 * 180.08692 * 8 6 5 10 10 H 1.07996 * 119.99877 * 180.52963 * 9 8 6 11 11 C 1.39958 * 120.00038 * 0.53069 * 9 8 6 12 12 N 1.30907 * 119.99922 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 119.99547 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47301 * 60.00374 * 13 11 9 15 15 H 1.48504 * 109.47003 * 179.97438 * 13 11 9 16 16 H 1.48489 * 109.47564 * 299.99887 * 13 11 9 17 17 C 1.38085 * 107.42489 * 0.53466 * 8 6 5 18 18 C 1.50702 * 125.98516 * 179.57231 * 17 8 6 19 19 N 1.36365 * 108.21896 * 359.73430 * 5 4 3 20 20 H 1.09002 * 109.47152 * 90.02745 * 1 2 3 21 21 H 1.09001 * 109.46980 * 330.02846 * 1 2 3 22 22 H 1.09004 * 109.47113 * 210.02827 * 1 2 3 23 23 H 1.08000 * 125.78390 * 359.97438 * 3 2 1 24 24 H 0.96996 * 119.99630 * 179.97438 * 12 11 9 25 25 H 1.08998 * 109.47126 * 269.99892 * 18 17 8 26 26 H 1.08994 * 109.46568 * 30.00411 * 18 17 8 27 27 H 1.09000 * 109.46930 * 150.00027 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3079 1.0807 0.0000 4 7 3.5842 0.6633 -0.0006 5 6 3.6132 -0.6525 -0.0004 6 7 4.4564 -1.7448 -0.0003 7 1 5.4260 -1.7196 0.0000 8 6 3.6647 -2.8887 0.0163 9 6 4.1220 -4.2146 0.0237 10 1 3.4139 -5.0300 0.0282 11 6 5.4960 -4.4810 0.0255 12 7 6.3543 -3.4926 0.0196 13 14 6.1049 -6.2469 0.0361 14 1 5.6046 -6.9503 -1.1723 15 1 7.5899 -6.2585 0.0357 16 1 5.6044 -6.9358 1.2526 17 6 2.3460 -2.4790 0.0138 18 6 1.1386 -3.3808 0.0191 19 7 2.3276 -1.1073 0.0063 20 1 -0.3633 -0.0005 -1.0277 21 1 -0.3633 0.8903 0.5134 22 1 -0.3633 -0.8898 0.5143 23 1 1.9799 2.1097 -0.0004 24 1 7.3065 -3.6772 0.0212 25 1 0.8475 -3.6042 -1.0073 26 1 1.3801 -4.3081 0.5384 27 1 0.3149 -2.8821 0.5299 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214078217.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:00 Heat of formation + Delta-G solvation = 82.905834 kcal Electronic energy + Delta-G solvation = -13061.778485 eV Core-core repulsion = 10820.880630 eV Total energy + Delta-G solvation = -2240.897856 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.67269 -37.05025 -33.66843 -32.46426 -30.12111 -29.66937 -27.35500 -24.75087 -23.93710 -20.65485 -20.13321 -18.06179 -17.36170 -15.54385 -14.95616 -14.93292 -14.46545 -13.64277 -12.66621 -12.64284 -12.57565 -12.19539 -12.01553 -11.82438 -11.56945 -11.45696 -10.93878 -10.86448 -10.60431 -10.41181 -9.53320 -9.48422 -8.76646 -7.28577 -7.24767 -6.24366 -4.67014 2.72444 2.90007 2.93369 3.25342 3.66328 3.66412 3.96286 4.29323 4.48520 4.95262 5.79187 5.89919 6.04264 6.11470 6.18506 6.29856 6.41985 6.55866 6.62158 6.83286 6.90827 7.16256 7.24021 7.63495 7.83842 7.98010 8.26279 8.44530 8.87651 9.08422 9.54828 9.82391 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.054601 B = 0.010358 C = 0.008762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.684052 B = 2702.618531 C = 3194.848988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C -0.103 4.103 3 C -0.003 4.003 4 N -0.540 5.540 5 C 0.348 3.652 6 N -0.574 5.574 7 H 0.439 0.561 8 C 0.297 3.703 9 C -0.438 4.438 10 H 0.105 0.895 11 C 0.072 3.928 12 N -0.830 5.830 13 Si 0.939 3.061 14 H -0.261 1.261 15 H -0.276 1.276 16 H -0.261 1.261 17 C -0.245 4.245 18 C -0.024 4.024 19 N -0.347 5.347 20 H 0.052 0.948 21 H 0.065 0.935 22 H 0.052 0.948 23 H 0.159 0.841 24 H 0.295 0.705 25 H 0.035 0.965 26 H 0.060 0.940 27 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.025 -1.941 0.112 4.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.220 4.220 3 C -0.156 4.156 4 N -0.269 5.269 5 C 0.000 4.000 6 N -0.205 5.205 7 H 0.290 0.710 8 C 0.187 3.813 9 C -0.472 4.472 10 H 0.123 0.877 11 C -0.144 4.144 12 N -0.460 5.460 13 Si 0.763 3.237 14 H -0.185 1.185 15 H -0.201 1.201 16 H -0.185 1.185 17 C -0.348 4.348 18 C -0.082 4.082 19 N -0.022 5.022 20 H 0.070 0.930 21 H 0.084 0.916 22 H 0.071 0.929 23 H 0.177 0.823 24 H 0.107 0.893 25 H 0.054 0.946 26 H 0.079 0.921 27 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -3.162 -1.472 0.107 3.489 hybrid contribution 0.135 -1.050 -0.006 1.059 sum -3.026 -2.522 0.101 3.941 Atomic orbital electron populations 1.19867 0.88939 1.01444 1.00762 1.20160 0.93046 0.84771 1.23974 1.21519 0.87590 0.97112 1.09349 1.70049 1.21847 1.03741 1.31304 1.20686 0.81188 0.88359 1.09773 1.42430 1.09144 0.99961 1.68975 0.70991 1.17568 0.85086 0.86471 0.92160 1.18823 0.92313 0.90321 1.45715 0.87748 1.26082 0.96277 1.01056 0.91011 1.68822 1.04789 1.34081 1.38297 0.85821 0.77842 0.79819 0.80215 1.18537 1.20080 1.18541 1.19572 0.94832 0.79204 1.41198 1.19501 0.92743 0.96605 0.99374 1.42679 1.07621 1.05202 1.46671 0.92971 0.91630 0.92934 0.82335 0.89344 0.94611 0.92093 0.94420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.89 10.44 36.01 0.38 -0.52 15 2 C -0.10 -2.33 7.26 -81.22 -0.59 -2.92 15 3 C 0.00 -0.07 11.76 -17.80 -0.21 -0.28 15 4 N -0.54 -14.05 11.29 -13.87 -0.16 -14.21 15 5 C 0.35 9.42 9.59 -319.35 -3.06 6.35 15 6 N -0.57 -15.26 5.92 -11.10 -0.07 -15.32 15 7 H 0.44 11.43 6.34 -40.82 -0.26 11.17 15 8 C 0.30 7.74 6.69 -83.85 -0.56 7.18 15 9 C -0.44 -10.61 9.03 -38.18 -0.34 -10.96 15 10 H 0.10 2.33 7.20 -52.49 -0.38 1.95 15 11 C 0.07 1.63 5.50 -17.30 -0.10 1.54 15 12 N -0.83 -19.49 10.70 55.55 0.59 -18.90 15 13 Si 0.94 17.01 29.56 -169.99 -5.02 11.98 15 14 H -0.26 -4.67 7.11 56.52 0.40 -4.27 15 15 H -0.28 -4.92 7.11 56.52 0.40 -4.52 15 16 H -0.26 -4.66 7.11 56.52 0.40 -4.26 15 17 C -0.24 -6.12 7.30 -80.25 -0.59 -6.71 15 18 C -0.02 -0.49 10.17 36.01 0.37 -0.13 15 19 N -0.35 -8.90 3.45 -54.47 -0.19 -9.08 15 20 H 0.05 0.83 8.14 -51.93 -0.42 0.40 15 21 H 0.06 0.94 8.14 -51.93 -0.42 0.51 15 22 H 0.05 0.89 7.03 -51.93 -0.36 0.52 15 23 H 0.16 2.90 8.06 -52.49 -0.42 2.48 15 24 H 0.29 6.27 8.30 -40.82 -0.34 5.93 15 25 H 0.04 0.69 8.14 -51.93 -0.42 0.26 15 26 H 0.06 1.15 7.45 -51.93 -0.39 0.77 15 27 H 0.04 0.71 7.03 -51.93 -0.36 0.34 15 LS Contribution 235.81 15.07 3.55 3.55 Total: -1.00 -28.53 235.81 -8.57 -37.10 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -2.58 Total: 11.31 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -4.71 Total: -6.44 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: 0.18 Total: -57.51 kcal Atomic # 14 Polarization: 17.01 SS G_CDS: -5.02 Total: 11.98 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -28.53 -8.57 -37.10 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214078217.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.007 kcal (2) G-P(sol) polarization free energy of solvation -28.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds