Wall clock time and date at job start Mon Mar 30 2020 02:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34510 * 126.53866 * 2 1 4 4 N 1.34288 * 108.42873 * 180.02562 * 3 2 1 5 5 C 1.31615 * 109.37045 * 359.97438 * 4 3 2 6 6 N 1.37990 * 143.59496 * 180.02562 * 5 4 3 7 7 H 0.97002 * 126.17457 * 0.02562 * 6 5 4 8 8 C 1.39122 * 107.64643 * 179.29261 * 6 5 4 9 9 C 1.40259 * 126.28478 * 180.08692 * 8 6 5 10 10 H 1.07996 * 119.99877 * 180.52963 * 9 8 6 11 11 C 1.39958 * 120.00038 * 0.53069 * 9 8 6 12 12 N 1.30907 * 119.99922 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 119.99547 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47301 * 60.00374 * 13 11 9 15 15 H 1.48504 * 109.47003 * 179.97438 * 13 11 9 16 16 H 1.48489 * 109.47564 * 299.99887 * 13 11 9 17 17 C 1.38085 * 107.42489 * 0.53466 * 8 6 5 18 18 C 1.50702 * 125.98516 * 179.57231 * 17 8 6 19 19 N 1.36365 * 108.21896 * 359.73430 * 5 4 3 20 20 H 1.09002 * 109.47152 * 90.02745 * 1 2 3 21 21 H 1.09001 * 109.46980 * 330.02846 * 1 2 3 22 22 H 1.09004 * 109.47113 * 210.02827 * 1 2 3 23 23 H 1.08000 * 125.78390 * 359.97438 * 3 2 1 24 24 H 0.96996 * 119.99630 * 179.97438 * 12 11 9 25 25 H 1.08998 * 109.47126 * 269.99892 * 18 17 8 26 26 H 1.08994 * 109.46568 * 30.00411 * 18 17 8 27 27 H 1.09000 * 109.46930 * 150.00027 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3079 1.0807 0.0000 4 7 3.5842 0.6633 -0.0006 5 6 3.6132 -0.6525 -0.0004 6 7 4.4564 -1.7448 -0.0003 7 1 5.4260 -1.7196 0.0000 8 6 3.6647 -2.8887 0.0163 9 6 4.1220 -4.2146 0.0237 10 1 3.4139 -5.0300 0.0282 11 6 5.4960 -4.4810 0.0255 12 7 6.3543 -3.4926 0.0196 13 14 6.1049 -6.2469 0.0361 14 1 5.6046 -6.9503 -1.1723 15 1 7.5899 -6.2585 0.0357 16 1 5.6044 -6.9358 1.2526 17 6 2.3460 -2.4790 0.0138 18 6 1.1386 -3.3808 0.0191 19 7 2.3276 -1.1073 0.0063 20 1 -0.3633 -0.0005 -1.0277 21 1 -0.3633 0.8903 0.5134 22 1 -0.3633 -0.8898 0.5143 23 1 1.9799 2.1097 -0.0004 24 1 7.3065 -3.6772 0.0212 25 1 0.8475 -3.6042 -1.0073 26 1 1.3801 -4.3081 0.5384 27 1 0.3149 -2.8821 0.5299 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214078217.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:00 Heat of formation + Delta-G solvation = 68.522667 kcal Electronic energy + Delta-G solvation = -13062.402186 eV Core-core repulsion = 10820.880630 eV Total energy + Delta-G solvation = -2241.521557 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.51929 -38.88661 -35.44766 -34.26273 -31.75592 -31.46195 -29.10087 -26.45306 -25.69518 -22.45835 -22.04826 -19.87050 -19.15305 -17.30237 -16.80161 -16.71162 -16.26889 -15.27632 -14.33579 -14.27114 -14.08127 -13.76029 -13.50068 -13.43818 -13.11759 -13.09997 -12.69161 -12.40263 -12.29112 -11.95001 -11.41008 -11.17665 -10.64385 -9.14318 -8.96545 -8.08912 -6.51271 1.11718 1.42001 1.56643 1.60284 1.90209 2.10096 2.16170 2.41742 2.69890 3.13664 4.10350 4.32208 4.49172 4.53781 4.65599 4.84818 4.91120 4.98768 5.07725 5.14891 5.27971 5.40291 5.47398 5.79045 6.04525 6.20167 6.43573 6.63403 6.99591 7.23044 7.64462 8.12255 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.054601 B = 0.010358 C = 0.008762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.684052 B = 2702.618531 C = 3194.848988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 C -0.109 4.109 3 C -0.015 4.015 4 N -0.567 5.567 5 C 0.305 3.695 6 N -0.585 5.585 7 H 0.434 0.566 8 C 0.266 3.734 9 C -0.461 4.461 10 H 0.119 0.881 11 C 0.032 3.968 12 N -0.855 5.855 13 Si 1.015 2.985 14 H -0.254 1.254 15 H -0.271 1.271 16 H -0.254 1.254 17 C -0.268 4.268 18 C -0.017 4.017 19 N -0.356 5.356 20 H 0.067 0.933 21 H 0.099 0.901 22 H 0.053 0.947 23 H 0.199 0.801 24 H 0.303 0.697 25 H 0.045 0.955 26 H 0.071 0.929 27 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.181 -2.873 0.148 5.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.225 4.225 3 C -0.166 4.166 4 N -0.297 5.297 5 C -0.043 4.043 6 N -0.217 5.217 7 H 0.284 0.716 8 C 0.156 3.844 9 C -0.494 4.494 10 H 0.137 0.863 11 C -0.181 4.181 12 N -0.485 5.485 13 Si 0.834 3.166 14 H -0.178 1.178 15 H -0.196 1.196 16 H -0.178 1.178 17 C -0.371 4.371 18 C -0.075 4.075 19 N -0.031 5.031 20 H 0.086 0.914 21 H 0.117 0.883 22 H 0.072 0.928 23 H 0.216 0.784 24 H 0.115 0.885 25 H 0.064 0.936 26 H 0.090 0.910 27 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.350 -2.378 0.142 4.959 hybrid contribution 0.497 -0.661 -0.021 0.827 sum -3.853 -3.038 0.122 4.908 Atomic orbital electron populations 1.20026 0.85020 1.03191 1.02305 1.21183 0.95509 0.83796 1.21984 1.22286 0.86469 0.99159 1.08652 1.70002 1.23987 1.03672 1.32088 1.21076 0.82279 0.88954 1.11958 1.42505 1.09036 1.00413 1.69729 0.71592 1.18192 0.85881 0.87138 0.93141 1.19238 0.93662 0.90095 1.46362 0.86329 1.27109 0.95839 1.05477 0.89690 1.68866 1.05511 1.36224 1.37903 0.84705 0.77298 0.74047 0.80507 1.17815 1.19552 1.17759 1.20300 0.95999 0.79643 1.41182 1.19545 0.91408 0.96265 1.00316 1.43027 1.07608 1.05933 1.46554 0.91393 0.88280 0.92762 0.78398 0.88512 0.93637 0.91012 0.93015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.48 10.44 71.24 0.74 -0.74 15 2 C -0.11 -4.78 7.26 40.77 0.30 -4.49 15 3 C -0.01 -0.64 11.76 83.46 0.98 0.34 15 4 N -0.57 -29.88 11.29 -197.79 -2.23 -32.12 15 5 C 0.30 16.89 9.59 260.28 2.50 19.39 15 6 N -0.59 -32.24 5.92 -189.05 -1.12 -33.36 15 7 H 0.43 23.66 6.34 -92.71 -0.59 23.07 15 8 C 0.27 14.12 6.69 38.44 0.26 14.38 15 9 C -0.46 -22.38 9.03 23.18 0.21 -22.17 15 10 H 0.12 5.21 7.20 -2.91 -0.02 5.19 15 11 C 0.03 1.45 5.50 85.25 0.47 1.92 15 12 N -0.86 -40.66 10.70 21.84 0.23 -40.43 15 13 Si 1.02 33.77 29.56 68.60 2.03 35.80 15 14 H -0.25 -8.14 7.11 99.48 0.71 -7.44 15 15 H -0.27 -8.71 7.11 99.48 0.71 -8.00 15 16 H -0.25 -8.10 7.11 99.48 0.71 -7.40 15 17 C -0.27 -13.44 7.30 41.68 0.30 -13.13 15 18 C -0.02 -0.69 10.17 71.24 0.72 0.04 15 19 N -0.36 -18.27 3.45 -326.25 -1.12 -19.39 15 20 H 0.07 1.92 8.14 -2.39 -0.02 1.90 15 21 H 0.10 2.42 8.14 -2.39 -0.02 2.40 15 22 H 0.05 1.67 7.03 -2.38 -0.02 1.66 15 23 H 0.20 6.75 8.06 -2.91 -0.02 6.72 15 24 H 0.30 12.94 8.30 -92.71 -0.77 12.18 15 25 H 0.04 1.67 8.14 -2.39 -0.02 1.65 15 26 H 0.07 2.62 7.45 -2.39 -0.02 2.60 15 27 H 0.05 1.85 7.03 -2.39 -0.02 1.83 15 Total: -1.00 -62.48 235.81 4.88 -57.60 By element: Atomic # 1 Polarization: 35.75 SS G_CDS: 0.61 Total: 36.36 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: 6.48 Total: -4.46 kcal Atomic # 7 Polarization: -121.06 SS G_CDS: -4.24 Total: -125.30 kcal Atomic # 14 Polarization: 33.77 SS G_CDS: 2.03 Total: 35.80 kcal Total: -62.48 4.88 -57.60 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214078217.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.125 kcal (2) G-P(sol) polarization free energy of solvation -62.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds