Wall clock time and date at job start Mon Mar 30 2020 02:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34516 * 125.78171 * 2 1 4 4 N 1.37819 * 106.91730 * 180.02562 * 3 2 1 5 5 C 1.37188 * 144.23097 * 179.28424 * 4 3 2 6 6 C 1.38083 * 108.02957 * 180.02562 * 5 4 3 7 7 C 1.40258 * 126.28579 * 179.97438 * 6 5 4 8 8 H 1.08003 * 119.99770 * 180.02562 * 7 6 5 9 9 C 1.39957 * 120.00195 * 0.02562 * 7 6 5 10 10 N 1.30911 * 119.99718 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99975 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.46983 * 60.00499 * 11 9 7 13 13 H 1.48504 * 109.46713 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47109 * 299.99971 * 11 9 7 15 15 N 1.39114 * 107.42881 * 359.97438 * 6 5 4 16 16 C 1.46499 * 126.17805 * 180.02562 * 15 6 5 17 17 C 1.36366 * 107.05640 * 359.59541 * 4 3 2 18 18 N 1.31604 * 108.22660 * 0.14637 * 17 4 3 19 19 H 1.08995 * 109.47302 * 270.52012 * 1 2 3 20 20 H 1.08998 * 109.47224 * 30.52071 * 1 2 3 21 21 H 1.09009 * 109.47043 * 150.51770 * 1 2 3 22 22 H 1.08002 * 126.54305 * 359.40549 * 3 2 1 23 23 H 1.08003 * 125.98146 * 0.06637 * 5 4 3 24 24 H 0.96999 * 119.99599 * 179.97438 * 10 9 7 25 25 H 1.09002 * 109.47391 * 90.02200 * 16 15 6 26 26 H 1.09001 * 109.46813 * 330.02256 * 16 15 6 27 27 H 1.09004 * 109.47041 * 210.02383 * 16 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2935 1.0913 0.0000 4 7 3.5977 0.6456 -0.0006 5 6 4.9103 1.0445 -0.0110 6 6 5.7010 -0.0875 -0.0020 7 6 7.1032 -0.1206 -0.0085 8 1 7.6209 -1.0684 -0.0006 9 6 7.8313 1.0745 -0.0251 10 7 7.2037 2.2233 -0.0341 11 14 9.6988 1.0303 -0.0345 12 1 10.1707 0.3060 -1.2418 13 1 10.2266 2.4183 -0.0515 14 1 10.1835 0.3318 1.1831 15 7 4.8515 -1.1890 0.0147 16 6 5.2599 -2.5958 0.0293 17 6 3.5547 -0.7173 0.0083 18 7 2.2923 -1.0893 0.0108 19 1 -0.3633 0.0093 1.0276 20 1 -0.3633 0.8853 -0.5219 21 1 -0.3634 -0.8947 -0.5058 22 1 1.9656 2.1203 -0.0090 23 1 5.2632 2.0652 -0.0233 24 1 7.7084 3.0516 -0.0452 25 1 5.3655 -2.9329 1.0605 26 1 6.2138 -2.7026 -0.4873 27 1 4.5043 -3.1987 -0.4745 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214078449.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:24 Heat of formation + Delta-G solvation = 102.033566 kcal Electronic energy + Delta-G solvation = -12938.949601 eV Core-core repulsion = 10698.881185 eV Total energy + Delta-G solvation = -2240.068415 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.61499 -37.22566 -33.75860 -32.74412 -30.03178 -28.58465 -27.42036 -24.88975 -23.89784 -20.23071 -19.49243 -19.09148 -16.84104 -15.88178 -15.06028 -14.80568 -14.51876 -13.44113 -13.23364 -12.65222 -12.53241 -12.28391 -12.11131 -11.68293 -11.47106 -11.42133 -11.13604 -10.67723 -10.29461 -10.22931 -9.51360 -9.26796 -8.79924 -7.15968 -6.87964 -6.25865 -4.57218 2.81850 2.96596 2.99109 3.24979 3.51580 3.80659 3.99990 4.17518 4.58691 5.05944 5.49273 5.71049 5.95568 5.99807 6.14903 6.16015 6.26279 6.41236 6.49080 6.90054 7.02742 7.14386 7.51030 7.56968 7.91338 8.01795 8.42382 8.59021 8.72682 9.11552 9.44469 10.05843 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.059696 B = 0.009521 C = 0.008261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.928635 B = 2940.014209 C = 3388.476493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 C 0.012 3.988 3 C -0.120 4.120 4 N -0.359 5.359 5 C -0.206 4.206 6 C 0.250 3.750 7 C -0.437 4.437 8 H 0.084 0.916 9 C 0.070 3.930 10 N -0.799 5.799 11 Si 0.935 3.065 12 H -0.264 1.264 13 H -0.276 1.276 14 H -0.264 1.264 15 N -0.508 5.508 16 C 0.117 3.883 17 C 0.347 3.653 18 N -0.538 5.538 19 H 0.056 0.944 20 H 0.059 0.941 21 H 0.060 0.940 22 H 0.154 0.846 23 H 0.200 0.800 24 H 0.284 0.716 25 H 0.051 0.949 26 H 0.076 0.924 27 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.739 -1.790 -0.105 1.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.121 4.121 3 C -0.254 4.254 4 N -0.032 5.032 5 C -0.328 4.328 6 C 0.147 3.853 7 C -0.470 4.470 8 H 0.102 0.898 9 C -0.147 4.147 10 N -0.426 5.426 11 Si 0.759 3.241 12 H -0.189 1.189 13 H -0.201 1.201 14 H -0.189 1.189 15 N -0.212 5.212 16 C -0.026 4.026 17 C 0.001 3.999 18 N -0.269 5.269 19 H 0.075 0.925 20 H 0.078 0.922 21 H 0.079 0.921 22 H 0.172 0.828 23 H 0.216 0.784 24 H 0.095 0.905 25 H 0.069 0.931 26 H 0.095 0.905 27 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.831 -2.363 -0.097 2.507 hybrid contribution 1.145 0.912 0.017 1.464 sum 0.314 -1.452 -0.079 1.487 Atomic orbital electron populations 1.19816 0.88641 1.01416 1.00992 1.20170 0.95153 0.87924 1.08888 1.21369 0.80557 0.99113 1.24393 1.43270 1.05934 1.08283 1.45723 1.22949 0.75574 1.00859 1.33424 1.17899 0.90418 0.80755 0.96230 1.18449 0.87686 0.94420 1.46460 0.89816 1.25718 1.01934 0.94233 0.92849 1.69477 1.37922 0.98858 1.36332 0.85921 0.80029 0.78327 0.79843 1.18902 1.20096 1.18905 1.43456 1.00203 1.06088 1.71461 1.21427 1.00708 0.79111 1.01356 1.20257 0.87611 0.81703 1.10377 1.69877 0.95637 1.29608 1.31743 0.92485 0.92157 0.92120 0.82840 0.78390 0.90452 0.93063 0.90513 0.91430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.84 10.42 36.01 0.38 -0.47 15 2 C 0.01 0.27 7.07 -82.83 -0.59 -0.31 15 3 C -0.12 -2.83 11.95 -16.17 -0.19 -3.02 15 4 N -0.36 -9.62 3.45 -62.78 -0.22 -9.84 15 5 C -0.21 -5.68 10.92 -15.21 -0.17 -5.84 15 6 C 0.25 6.65 6.68 -83.85 -0.56 6.09 15 7 C -0.44 -10.88 9.02 -38.18 -0.34 -11.22 15 8 H 0.08 1.91 7.20 -52.48 -0.38 1.53 15 9 C 0.07 1.65 5.50 -17.30 -0.10 1.55 15 10 N -0.80 -19.68 10.25 55.55 0.57 -19.11 15 11 Si 0.93 17.61 29.56 -169.99 -5.03 12.58 15 12 H -0.26 -4.90 7.11 56.52 0.40 -4.50 15 13 H -0.28 -5.10 7.11 56.52 0.40 -4.70 15 14 H -0.26 -4.91 7.11 56.52 0.40 -4.51 15 15 N -0.51 -12.66 3.28 -122.37 -0.40 -13.06 15 16 C 0.12 2.24 10.97 59.85 0.66 2.90 15 17 C 0.35 9.24 9.14 -319.35 -2.92 6.32 15 18 N -0.54 -13.70 11.29 -10.08 -0.11 -13.81 15 19 H 0.06 0.86 8.14 -51.93 -0.42 0.44 15 20 H 0.06 0.85 8.14 -51.93 -0.42 0.43 15 21 H 0.06 0.96 8.14 -51.92 -0.42 0.54 15 22 H 0.15 3.10 8.06 -52.49 -0.42 2.68 15 23 H 0.20 5.54 5.62 -52.48 -0.29 5.25 15 24 H 0.28 6.34 8.30 -40.82 -0.34 6.00 15 25 H 0.05 0.90 8.14 -51.93 -0.42 0.48 15 26 H 0.08 1.33 7.41 -51.93 -0.38 0.94 15 27 H 0.07 1.20 8.14 -51.93 -0.42 0.78 15 LS Contribution 238.13 15.07 3.59 3.59 Total: -1.00 -30.15 238.13 -8.16 -38.31 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -2.73 Total: 5.35 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -3.83 Total: -4.01 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: -0.16 Total: -55.83 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -5.03 Total: 12.58 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -30.15 -8.16 -38.31 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214078449.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.348 kcal (2) G-P(sol) polarization free energy of solvation -30.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds