Wall clock time and date at job start Mon Mar 30 2020 02:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31044 * 1 3 3 Si 1.86803 * 120.00440 * 2 1 4 4 H 1.48491 * 109.47363 * 240.00100 * 3 2 1 5 5 H 1.48502 * 109.46657 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46946 * 119.99826 * 3 2 1 7 7 C 1.39683 * 120.00093 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00048 * 179.97438 * 7 2 1 9 9 C 1.41348 * 119.99518 * 359.97438 * 7 2 1 10 10 C 1.47100 * 127.11713 * 0.26083 * 9 7 2 11 11 C 1.34061 * 106.24898 * 180.13423 * 10 9 7 12 12 N 1.36112 * 109.76065 * 359.69069 * 11 10 9 13 13 C 1.34899 * 110.41448 * 0.15092 * 12 11 10 14 14 C 1.48129 * 124.26674 * 180.10801 * 12 11 10 15 15 C 1.53315 * 107.33179 * 294.58535 * 14 12 11 16 16 C 1.50833 * 111.40222 * 80.98695 * 15 14 12 17 17 C 1.50991 * 116.34134 * 287.10469 * 16 15 14 18 18 C 1.52206 * 125.76846 * 179.97438 * 11 10 9 19 19 H 0.97009 * 120.00013 * 359.97438 * 1 2 3 20 20 H 1.08006 * 126.87510 * 0.03274 * 10 9 7 21 21 H 1.07996 * 126.09598 * 180.09999 * 13 12 11 22 22 H 1.09003 * 109.87879 * 175.13247 * 14 12 11 23 23 H 1.08999 * 109.94799 * 54.07959 * 14 12 11 24 24 H 1.09000 * 109.09040 * 320.49173 * 15 14 12 25 25 H 1.09000 * 109.03860 * 201.44934 * 15 14 12 26 26 H 1.09007 * 108.08056 * 165.37986 * 16 15 14 27 27 H 1.09003 * 108.08032 * 48.83410 * 16 15 14 28 28 H 1.09008 * 109.16813 * 311.99036 * 17 16 15 29 29 H 1.08994 * 109.13349 * 192.75039 * 17 16 15 30 30 H 1.08996 * 109.92052 * 4.55354 * 18 11 10 31 31 H 1.09002 * 109.92345 * 125.74774 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3104 0.0000 0.0000 3 14 2.2446 1.6177 0.0000 4 1 3.0983 1.6964 -1.2124 5 1 1.2796 2.7464 0.0006 6 1 3.0983 1.6963 1.2125 7 6 2.0089 -1.2097 0.0005 8 1 3.0888 -1.2097 0.0001 9 6 1.3020 -2.4337 0.0016 10 6 -0.1576 -2.6159 -0.0030 11 6 -0.3705 -3.9395 0.0031 12 7 0.8212 -4.5972 0.0043 13 6 1.8440 -3.7178 0.0022 14 6 0.9598 -6.0720 0.0083 15 6 0.3970 -6.5800 1.3409 16 6 -1.1078 -6.6753 1.3023 17 6 -1.8630 -5.3683 1.3367 18 6 -1.7311 -4.6218 0.0021 19 1 -0.4850 0.8401 0.0004 20 1 -0.9077 -1.8388 -0.0085 21 1 2.8954 -3.9647 0.0010 22 1 2.0113 -6.3457 -0.0786 23 1 0.3956 -6.5008 -0.8200 24 1 0.6907 -5.8950 2.1362 25 1 0.8116 -7.5664 1.5490 26 1 -1.4307 -7.2750 2.1534 27 1 -1.3900 -7.2053 0.3925 28 1 -1.4634 -4.7450 2.1367 29 1 -2.9163 -5.5693 1.5319 30 1 -2.5206 -3.8756 -0.0859 31 1 -1.7919 -5.3278 -0.8262 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214083820.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:05 Heat of formation + Delta-G solvation = 28.805014 kcal Electronic energy + Delta-G solvation = -13310.138164 eV Core-core repulsion = 11170.434664 eV Total energy + Delta-G solvation = -2139.703500 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.56800 -35.70047 -33.17364 -32.24394 -29.31412 -26.99907 -26.24560 -23.51847 -22.08461 -20.08074 -19.11191 -17.38546 -16.62639 -15.40663 -14.61051 -14.39315 -13.70666 -13.40437 -13.31370 -12.85121 -12.11271 -11.81964 -11.42636 -11.11965 -10.96549 -10.86018 -10.73152 -10.64248 -10.38167 -10.25132 -10.09967 -9.73039 -9.07417 -9.00462 -6.81883 -6.44934 -6.17468 -3.75693 3.21368 3.28572 3.32387 3.85699 4.26611 4.39049 4.58822 5.01240 5.09589 5.24772 5.58720 5.76574 5.79159 5.87275 5.94490 5.97643 6.10149 6.23182 6.30265 6.39830 6.52682 6.56590 6.76390 6.83673 7.52437 7.63567 7.88929 8.13526 8.52181 8.73125 9.12902 9.18208 9.48274 9.50741 10.78487 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.059591 B = 0.008911 C = 0.008106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.758563 B = 3141.359905 C = 3453.479617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.068 3.932 3 Si 0.905 3.095 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.442 4.442 8 H 0.062 0.938 9 C 0.037 3.963 10 C -0.193 4.193 11 C -0.023 4.023 12 N -0.454 5.454 13 C -0.183 4.183 14 C 0.117 3.883 15 C -0.133 4.133 16 C -0.112 4.112 17 C -0.116 4.116 18 C -0.040 4.040 19 H 0.267 0.733 20 H 0.151 0.849 21 H 0.126 0.874 22 H 0.075 0.925 23 H 0.063 0.937 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.635 -9.409 1.373 9.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.143 4.143 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.476 4.476 8 H 0.081 0.919 9 C 0.031 3.969 10 C -0.221 4.221 11 C -0.132 4.132 12 N -0.137 5.137 13 C -0.307 4.307 14 C -0.006 4.006 15 C -0.171 4.171 16 C -0.149 4.149 17 C -0.154 4.154 18 C -0.078 4.078 19 H 0.077 0.923 20 H 0.168 0.832 21 H 0.144 0.856 22 H 0.093 0.907 23 H 0.081 0.919 24 H 0.089 0.911 25 H 0.082 0.918 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.737 -9.587 1.378 10.065 hybrid contribution 0.582 0.733 0.018 0.936 sum -2.155 -8.854 1.396 9.219 Atomic orbital electron populations 1.69791 1.06895 1.27113 1.42341 1.25643 0.94733 1.00133 0.93773 0.86444 0.79722 0.81497 0.79156 1.19701 1.20875 1.19721 1.18671 0.93219 0.89580 1.46153 0.91947 1.18509 0.91508 0.90338 0.96567 1.22364 0.96964 0.91974 1.10847 1.20074 0.85564 0.92582 1.14936 1.43040 1.05336 1.03033 1.62328 1.21430 0.90393 0.88966 1.29913 1.21860 1.00736 0.81209 0.96789 1.21597 0.95967 1.00884 0.98682 1.20723 0.95074 0.97925 1.01207 1.21290 0.98799 0.96186 0.99105 1.20393 0.93772 0.97971 0.95707 0.92264 0.83180 0.85630 0.90662 0.91857 0.91136 0.91785 0.93034 0.92975 0.91612 0.92602 0.90705 0.92903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.51 10.43 55.54 0.58 -22.93 16 2 C 0.07 1.90 5.49 -17.35 -0.10 1.80 16 3 Si 0.91 20.80 29.56 -169.99 -5.02 15.77 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.44 -12.97 9.41 -37.86 -0.36 -13.33 16 8 H 0.06 1.76 7.84 -52.49 -0.41 1.35 16 9 C 0.04 1.08 6.10 -104.70 -0.64 0.44 16 10 C -0.19 -5.32 9.78 -37.46 -0.37 -5.69 16 11 C -0.02 -0.53 5.83 -81.42 -0.47 -1.01 16 12 N -0.45 -10.26 2.73 -109.90 -0.30 -10.56 16 13 C -0.18 -4.73 11.47 -15.78 -0.18 -4.91 16 14 C 0.12 1.99 6.42 -2.98 -0.02 1.97 16 15 C -0.13 -1.98 5.66 -27.66 -0.16 -2.13 16 16 C -0.11 -1.55 5.10 -28.83 -0.15 -1.70 16 17 C -0.12 -1.83 5.62 -27.49 -0.15 -1.99 16 18 C -0.04 -0.74 5.93 -26.88 -0.16 -0.90 16 19 H 0.27 6.99 8.30 -40.82 -0.34 6.65 16 20 H 0.15 4.32 6.04 -52.48 -0.32 4.00 16 21 H 0.13 3.02 8.06 -52.49 -0.42 2.59 16 22 H 0.07 1.17 8.08 -51.93 -0.42 0.75 16 23 H 0.06 0.99 7.87 -51.93 -0.41 0.58 16 24 H 0.07 1.21 8.08 -51.93 -0.42 0.79 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 27 H 0.05 0.67 7.68 -51.93 -0.40 0.27 16 28 H 0.07 1.18 7.91 -51.92 -0.41 0.77 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.07 1.33 8.12 -51.93 -0.42 0.91 16 31 H 0.05 0.89 7.88 -51.93 -0.41 0.48 16 LS Contribution 251.12 15.07 3.78 3.78 Total: -1.00 -30.67 251.12 -8.15 -38.82 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -4.44 Total: 2.54 kcal Atomic # 6 Polarization: -24.68 SS G_CDS: -2.75 Total: -27.43 kcal Atomic # 7 Polarization: -33.78 SS G_CDS: 0.28 Total: -33.50 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -30.67 -8.15 -38.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214083820.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.627 kcal (2) G-P(sol) polarization free energy of solvation -30.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds