Wall clock time and date at job start Mon Mar 30 2020 02:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31044 * 1 3 3 Si 1.86803 * 120.00440 * 2 1 4 4 H 1.48491 * 109.47363 * 240.00100 * 3 2 1 5 5 H 1.48502 * 109.46657 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46946 * 119.99826 * 3 2 1 7 7 C 1.39683 * 120.00093 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00048 * 179.97438 * 7 2 1 9 9 C 1.41348 * 119.99518 * 359.97438 * 7 2 1 10 10 C 1.47100 * 127.11713 * 0.26083 * 9 7 2 11 11 C 1.34061 * 106.24898 * 180.13423 * 10 9 7 12 12 N 1.36112 * 109.76065 * 359.69069 * 11 10 9 13 13 C 1.34899 * 110.41448 * 0.15092 * 12 11 10 14 14 C 1.48129 * 124.26674 * 180.10801 * 12 11 10 15 15 C 1.53315 * 107.33179 * 294.58535 * 14 12 11 16 16 C 1.50833 * 111.40222 * 80.98695 * 15 14 12 17 17 C 1.50991 * 116.34134 * 287.10469 * 16 15 14 18 18 C 1.52206 * 125.76846 * 179.97438 * 11 10 9 19 19 H 0.97009 * 120.00013 * 359.97438 * 1 2 3 20 20 H 1.08006 * 126.87510 * 0.03274 * 10 9 7 21 21 H 1.07996 * 126.09598 * 180.09999 * 13 12 11 22 22 H 1.09003 * 109.87879 * 175.13247 * 14 12 11 23 23 H 1.08999 * 109.94799 * 54.07959 * 14 12 11 24 24 H 1.09000 * 109.09040 * 320.49173 * 15 14 12 25 25 H 1.09000 * 109.03860 * 201.44934 * 15 14 12 26 26 H 1.09007 * 108.08056 * 165.37986 * 16 15 14 27 27 H 1.09003 * 108.08032 * 48.83410 * 16 15 14 28 28 H 1.09008 * 109.16813 * 311.99036 * 17 16 15 29 29 H 1.08994 * 109.13349 * 192.75039 * 17 16 15 30 30 H 1.08996 * 109.92052 * 4.55354 * 18 11 10 31 31 H 1.09002 * 109.92345 * 125.74774 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3104 0.0000 0.0000 3 14 2.2446 1.6177 0.0000 4 1 3.0983 1.6964 -1.2124 5 1 1.2796 2.7464 0.0006 6 1 3.0983 1.6963 1.2125 7 6 2.0089 -1.2097 0.0005 8 1 3.0888 -1.2097 0.0001 9 6 1.3020 -2.4337 0.0016 10 6 -0.1576 -2.6159 -0.0030 11 6 -0.3705 -3.9395 0.0031 12 7 0.8212 -4.5972 0.0043 13 6 1.8440 -3.7178 0.0022 14 6 0.9598 -6.0720 0.0083 15 6 0.3970 -6.5800 1.3409 16 6 -1.1078 -6.6753 1.3023 17 6 -1.8630 -5.3683 1.3367 18 6 -1.7311 -4.6218 0.0021 19 1 -0.4850 0.8401 0.0004 20 1 -0.9077 -1.8388 -0.0085 21 1 2.8954 -3.9647 0.0010 22 1 2.0113 -6.3457 -0.0786 23 1 0.3956 -6.5008 -0.8200 24 1 0.6907 -5.8950 2.1362 25 1 0.8116 -7.5664 1.5490 26 1 -1.4307 -7.2750 2.1534 27 1 -1.3900 -7.2053 0.3925 28 1 -1.4634 -4.7450 2.1367 29 1 -2.9163 -5.5693 1.5319 30 1 -2.5206 -3.8756 -0.0859 31 1 -1.7919 -5.3278 -0.8262 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214083820.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:05 Heat of formation + Delta-G solvation = 11.473338 kcal Electronic energy + Delta-G solvation = -13310.889722 eV Core-core repulsion = 11170.434664 eV Total energy + Delta-G solvation = -2140.455058 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.34782 -37.13525 -35.14512 -33.78829 -31.14912 -28.68629 -28.01912 -25.33674 -23.58601 -21.38032 -21.05117 -19.18070 -18.57745 -17.16261 -16.42812 -15.79643 -15.12924 -14.89819 -14.77153 -14.53548 -13.73762 -13.55128 -13.03819 -12.88252 -12.83998 -12.63154 -12.38827 -12.25138 -11.75614 -11.56598 -11.55494 -11.46173 -11.07305 -10.94216 -8.85344 -8.39975 -8.23914 -5.90786 1.37859 1.39705 1.52078 1.95967 2.34479 2.53734 2.70314 3.69304 3.82535 3.93836 4.04601 4.18956 4.42592 4.50077 4.57358 4.67925 4.78858 4.93087 4.97593 5.15436 5.22007 5.28598 5.30215 5.40787 5.50313 5.57041 5.92671 6.07738 6.41770 6.67743 7.08171 7.26082 7.38687 7.45004 8.72522 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.059591 B = 0.008911 C = 0.008106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.758563 B = 3141.359905 C = 3453.479617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.017 3.983 3 Si 0.982 3.018 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.266 1.266 7 C -0.484 4.484 8 H 0.057 0.943 9 C -0.015 4.015 10 C -0.250 4.250 11 C -0.003 4.003 12 N -0.448 5.448 13 C -0.189 4.189 14 C 0.106 3.894 15 C -0.128 4.128 16 C -0.114 4.114 17 C -0.112 4.112 18 C -0.039 4.039 19 H 0.271 0.729 20 H 0.127 0.873 21 H 0.138 0.862 22 H 0.090 0.910 23 H 0.087 0.913 24 H 0.039 0.961 25 H 0.103 0.897 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.034 0.966 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.026 -11.543 1.429 12.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.190 4.190 3 Si 0.804 3.196 4 H -0.190 1.190 5 H -0.196 1.196 6 H -0.191 1.191 7 C -0.518 4.518 8 H 0.076 0.924 9 C -0.021 4.021 10 C -0.278 4.278 11 C -0.115 4.115 12 N -0.129 5.129 13 C -0.314 4.314 14 C -0.015 4.015 15 C -0.166 4.166 16 C -0.152 4.152 17 C -0.149 4.149 18 C -0.077 4.077 19 H 0.081 0.919 20 H 0.145 0.855 21 H 0.156 0.844 22 H 0.109 0.891 23 H 0.105 0.895 24 H 0.058 0.942 25 H 0.121 0.879 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.053 0.947 29 H 0.106 0.894 30 H 0.091 0.909 31 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.124 -11.771 1.437 12.263 hybrid contribution 0.682 1.245 -0.003 1.420 sum -2.442 -10.526 1.433 10.900 Atomic orbital electron populations 1.69943 1.08301 1.28179 1.42547 1.26567 0.95762 1.03720 0.92983 0.85273 0.78383 0.76560 0.79349 1.19005 1.19571 1.19091 1.18993 0.93254 0.91194 1.48393 0.92440 1.19022 0.92811 0.91747 0.98560 1.22228 0.96200 0.93775 1.15566 1.20636 0.88003 0.91829 1.11002 1.43402 1.04153 1.05477 1.59852 1.21605 0.91641 0.88995 1.29196 1.22365 1.02682 0.77266 0.99173 1.21578 0.97069 1.01975 0.95948 1.20746 0.93857 0.96977 1.03585 1.21260 1.01115 0.96474 0.96081 1.20555 0.90311 0.98428 0.98398 0.91867 0.85540 0.84438 0.89122 0.89463 0.94172 0.87863 0.90380 0.90748 0.94707 0.89441 0.90864 0.90340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -50.93 10.43 21.79 0.23 -50.70 16 2 C 0.02 1.01 5.49 85.16 0.47 1.48 16 3 Si 0.98 43.94 29.56 68.60 2.03 45.97 16 4 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 5 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 7 C -0.48 -29.89 9.41 23.38 0.22 -29.67 16 8 H 0.06 3.42 7.84 -2.91 -0.02 3.40 16 9 C -0.01 -0.90 6.10 -19.91 -0.12 -1.02 16 10 C -0.25 -14.46 9.78 23.65 0.23 -14.22 16 11 C 0.00 -0.13 5.83 41.43 0.24 0.11 16 12 N -0.45 -19.97 2.73 -501.61 -1.37 -21.34 16 13 C -0.19 -9.96 11.47 84.50 0.97 -8.99 16 14 C 0.11 3.26 6.42 86.17 0.55 3.81 16 15 C -0.13 -3.31 5.66 30.00 0.17 -3.14 16 16 C -0.11 -2.63 5.10 29.24 0.15 -2.48 16 17 C -0.11 -3.21 5.62 30.10 0.17 -3.04 16 18 C -0.04 -1.35 5.93 30.50 0.18 -1.17 16 19 H 0.27 14.77 8.30 -92.70 -0.77 14.00 16 20 H 0.13 7.79 6.04 -2.91 -0.02 7.77 16 21 H 0.14 6.71 8.06 -2.91 -0.02 6.69 16 22 H 0.09 2.51 8.08 -2.39 -0.02 2.49 16 23 H 0.09 2.33 7.87 -2.39 -0.02 2.31 16 24 H 0.04 1.30 8.08 -2.39 -0.02 1.28 16 25 H 0.10 1.93 8.14 -2.39 -0.02 1.92 16 26 H 0.08 1.45 8.14 -2.38 -0.02 1.44 16 27 H 0.07 1.45 7.68 -2.39 -0.02 1.43 16 28 H 0.03 1.21 7.91 -2.38 -0.02 1.19 16 29 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.07 2.55 8.12 -2.39 -0.02 2.53 16 31 H 0.08 2.35 7.88 -2.39 -0.02 2.33 16 Total: -1.00 -71.24 251.12 5.21 -66.03 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: 1.10 Total: 18.38 kcal Atomic # 6 Polarization: -61.57 SS G_CDS: 3.23 Total: -58.34 kcal Atomic # 7 Polarization: -70.90 SS G_CDS: -1.14 Total: -72.04 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -71.24 5.21 -66.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214083820.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.500 kcal (2) G-P(sol) polarization free energy of solvation -71.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds