Wall clock time and date at job start Mon Mar 30 2020 02:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.36237 * 125.88992 * 2 1 4 4 H 0.97001 * 125.60635 * 0.02562 * 3 2 1 5 5 C 1.36719 * 108.78107 * 179.97438 * 3 2 1 6 6 C 1.34654 * 108.08750 * 359.75493 * 5 3 2 7 7 C 1.34765 * 125.88649 * 180.02562 * 2 1 3 8 8 C 1.50706 * 126.28988 * 359.97347 * 7 2 1 9 9 C 1.50699 * 109.46817 * 90.02773 * 8 7 2 10 10 H 1.08003 * 119.99962 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00270 * 180.02562 * 9 8 7 12 12 N 1.31522 * 119.99835 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00390 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46950 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47074 * 119.99834 * 13 11 9 16 16 H 1.48505 * 109.46997 * 239.99828 * 13 11 9 17 17 C 1.51289 * 110.42923 * 179.73589 * 6 5 3 18 18 C 1.54449 * 105.02322 * 343.51680 * 17 6 5 19 19 C 1.51411 * 141.63882 * 180.02562 * 5 3 2 20 20 H 1.08993 * 109.47193 * 269.99879 * 1 2 3 21 21 H 1.08999 * 109.46803 * 30.00044 * 1 2 3 22 22 H 1.09001 * 109.47148 * 149.99765 * 1 2 3 23 23 H 1.09000 * 109.47318 * 210.02153 * 8 7 2 24 24 H 1.09000 * 109.47161 * 330.02783 * 8 7 2 25 25 H 0.96992 * 120.00038 * 179.97438 * 12 11 9 26 26 H 1.08997 * 110.49475 * 224.52657 * 17 6 5 27 27 H 1.09002 * 110.22284 * 102.36127 * 17 6 5 28 28 H 1.09008 * 110.93721 * 267.25808 * 18 17 6 29 29 H 1.09000 * 110.97018 * 143.58996 * 18 17 6 30 30 H 1.08994 * 110.33586 * 315.79216 * 19 5 3 31 31 H 1.09002 * 110.33901 * 77.93569 * 19 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3056 1.1037 0.0000 4 1 1.9978 2.0236 0.0004 5 6 3.6123 0.7015 0.0006 6 6 3.6353 -0.6448 0.0064 7 6 2.2969 -1.0918 -0.0005 8 6 1.8357 -2.5266 -0.0006 9 6 1.6820 -3.0047 -1.4214 10 1 1.8965 -2.3363 -2.2423 11 6 1.2666 -4.2950 -1.6736 12 7 1.0049 -5.1087 -0.6740 13 14 1.0769 -4.8879 -3.4348 14 1 1.4310 -3.7884 -4.3681 15 1 1.9783 -6.0448 -3.6674 16 1 -0.3300 -5.3015 -3.6690 17 6 5.0619 -1.1486 0.0008 18 6 5.9133 0.0649 -0.4325 19 6 5.0235 1.2503 0.0014 20 1 -0.3633 0.0000 1.0276 21 1 -0.3633 0.8900 -0.5138 22 1 -0.3633 -0.8900 -0.5139 23 1 2.5717 -3.1449 0.5132 24 1 0.8771 -2.6001 0.5132 25 1 0.7124 -6.0163 -0.8513 26 1 5.1754 -1.9652 -0.7122 27 1 5.3497 -1.4761 0.9998 28 1 6.0670 0.0675 -1.5117 29 1 6.8671 0.0804 0.0948 30 1 5.1113 2.0705 -0.7111 31 1 5.2986 1.5866 1.0010 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214084424.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:02 Heat of formation + Delta-G solvation = 32.842455 kcal Electronic energy + Delta-G solvation = -13105.100787 eV Core-core repulsion = 10965.572364 eV Total energy + Delta-G solvation = -2139.528423 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.79006 -35.71831 -33.27541 -31.14757 -29.63626 -27.55152 -26.55242 -24.56415 -22.60125 -20.32934 -18.36800 -17.89395 -16.18785 -16.08204 -15.16665 -14.35882 -13.57497 -12.95871 -12.82603 -12.39703 -12.21248 -12.04234 -11.81717 -11.46154 -11.32205 -10.88070 -10.79427 -10.67558 -10.52057 -10.43535 -10.04367 -9.43916 -9.22266 -8.25516 -7.44877 -6.86525 -5.86422 -3.88330 2.94195 3.37412 3.44598 3.49945 3.72746 3.89437 4.58595 5.10585 5.17208 5.34392 5.46481 5.69102 5.82075 5.87800 5.96279 6.07051 6.13805 6.21396 6.36854 6.51724 6.63810 6.70246 6.85724 6.96481 7.40144 7.73005 7.75715 8.01071 8.11807 8.23185 8.42625 8.60583 9.18096 9.74022 11.22718 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.033357 B = 0.010156 C = 0.008754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.202103 B = 2756.413444 C = 3197.897342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.007 4.007 3 N -0.550 5.550 4 H 0.397 0.603 5 C -0.048 4.048 6 C -0.170 4.170 7 C -0.089 4.089 8 C 0.079 3.921 9 C -0.496 4.496 10 H 0.054 0.946 11 C 0.054 3.946 12 N -0.898 5.898 13 Si 0.888 3.112 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.285 1.285 17 C -0.049 4.049 18 C -0.115 4.115 19 C -0.028 4.028 20 H 0.058 0.942 21 H 0.048 0.952 22 H 0.090 0.910 23 H 0.022 0.978 24 H 0.021 0.979 25 H 0.258 0.742 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.899 11.686 1.566 12.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.116 4.116 3 N -0.146 5.146 4 H 0.232 0.768 5 C -0.160 4.160 6 C -0.178 4.178 7 C -0.095 4.095 8 C 0.042 3.958 9 C -0.535 4.535 10 H 0.072 0.928 11 C -0.146 4.146 12 N -0.539 5.539 13 Si 0.717 3.283 14 H -0.199 1.199 15 H -0.211 1.211 16 H -0.212 1.212 17 C -0.087 4.087 18 C -0.153 4.153 19 C -0.066 4.066 20 H 0.076 0.924 21 H 0.067 0.933 22 H 0.109 0.891 23 H 0.040 0.960 24 H 0.039 0.961 25 H 0.068 0.932 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.777 11.638 1.598 12.682 hybrid contribution -0.350 0.076 -0.994 1.056 sum 4.427 11.715 0.604 12.538 Atomic orbital electron populations 1.20172 0.88554 1.02818 1.01425 1.19950 0.92780 0.84984 1.13890 1.41048 1.04160 1.07357 1.62046 0.76834 1.20760 0.85905 0.95847 1.13517 1.20175 0.94341 0.93179 1.10073 1.19606 0.90021 0.96582 1.03260 1.17699 0.95964 0.85333 0.96800 1.21186 1.43567 0.96536 0.92186 0.92812 1.25009 0.95971 0.96899 0.96718 1.69978 1.47056 1.06509 1.30315 0.86587 0.77539 0.78680 0.85529 1.19855 1.21123 1.21167 1.20372 0.90356 0.97084 1.00888 1.22320 0.97330 0.94530 1.01094 1.20441 0.87796 0.97678 1.00669 0.92374 0.93327 0.89125 0.95982 0.96073 0.93225 0.91156 0.91860 0.91233 0.91050 0.92317 0.91422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.27 10.03 36.00 0.36 -0.91 16 2 C -0.01 -0.15 7.16 -81.87 -0.59 -0.74 16 3 N -0.55 -9.68 6.08 -5.22 -0.03 -9.71 16 4 H 0.40 5.43 8.96 -40.82 -0.37 5.06 16 5 C -0.05 -0.89 8.04 -81.33 -0.65 -1.54 16 6 C -0.17 -3.66 6.89 -104.51 -0.72 -4.38 16 7 C -0.09 -2.12 5.33 -104.76 -0.56 -2.68 16 8 C 0.08 2.19 5.07 -29.03 -0.15 2.04 16 9 C -0.50 -14.53 9.09 -34.44 -0.31 -14.85 16 10 H 0.05 1.59 7.74 -52.48 -0.41 1.19 16 11 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 12 N -0.90 -27.38 13.29 55.43 0.74 -26.64 16 13 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 16 14 H -0.27 -6.78 7.11 56.52 0.40 -6.37 16 15 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 16 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 17 C -0.05 -0.89 6.78 -26.83 -0.18 -1.07 16 18 C -0.11 -1.59 7.13 -25.21 -0.18 -1.77 16 19 C -0.03 -0.39 6.79 -26.78 -0.18 -0.57 16 20 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 21 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 22 H 0.09 1.80 7.75 -51.93 -0.40 1.39 16 23 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.02 0.60 7.76 -51.93 -0.40 0.20 16 25 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 261.81 15.07 3.95 3.95 Total: -1.00 -32.58 261.81 -8.15 -40.73 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -4.52 Total: -0.54 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: -3.26 Total: -24.99 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.70 Total: -36.36 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -32.58 -8.15 -40.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214084424.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.574 kcal (2) G-P(sol) polarization free energy of solvation -32.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds