Wall clock time and date at job start Mon Mar 30 2020 02:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.38235 * 120.00282 * 269.72898 * 3 2 1 5 5 C 1.38231 * 120.00276 * 179.76303 * 4 3 2 6 6 C 1.38233 * 119.99729 * 0.48568 * 5 4 3 7 7 C 1.50701 * 120.00070 * 179.76597 * 6 5 4 8 8 N 1.46504 * 109.47396 * 270.02345 * 7 6 5 9 9 C 1.36930 * 119.99915 * 180.02562 * 8 7 6 10 10 H 1.08003 * 120.00102 * 0.02562 * 9 8 7 11 11 C 1.38811 * 119.99877 * 179.97438 * 9 8 7 12 12 N 1.31625 * 120.00238 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 120.00005 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.46812 * 89.99922 * 13 11 9 15 15 H 1.48497 * 109.47307 * 210.00132 * 13 11 9 16 16 H 1.48494 * 109.46969 * 330.00290 * 13 11 9 17 17 C 1.38239 * 120.00062 * 359.79046 * 6 5 4 18 18 C 1.38230 * 119.99880 * 359.95582 * 17 6 5 19 19 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 20 20 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 21 21 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 23 23 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 24 24 H 1.08008 * 119.99550 * 359.97438 * 4 3 2 25 25 H 1.07993 * 120.00327 * 180.25079 * 5 4 3 26 26 H 1.09002 * 109.47060 * 30.02215 * 7 6 5 27 27 H 1.09001 * 109.47380 * 150.02303 * 7 6 5 28 28 H 0.96992 * 119.99388 * 359.97438 * 8 7 6 29 29 H 0.96990 * 120.00173 * 180.02562 * 12 11 9 30 30 H 1.08008 * 119.99983 * 179.97438 * 17 6 5 31 31 H 1.08007 * 119.99843 * 180.02562 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0706 -1.1971 5 6 2.7243 3.3754 -1.1971 6 6 2.9543 4.0272 0.0000 7 6 3.4567 5.4480 0.0001 8 7 4.9217 5.4480 0.0000 9 6 5.6063 6.6339 0.0006 10 1 5.0663 7.5692 0.0015 11 6 6.9944 6.6340 0.0011 12 7 7.6526 7.7739 0.0022 13 14 7.9285 5.0162 0.0017 14 1 8.1764 4.5873 -1.3983 15 1 9.2258 5.1939 0.7022 16 1 7.1257 3.9814 0.7016 17 6 2.7240 3.3755 1.1972 18 6 2.2628 2.0724 1.1971 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 1.8933 -0.5139 0.8900 23 1 1.8934 -0.5138 -0.8899 24 1 2.0927 1.5598 -2.1325 25 1 2.9047 3.8844 -2.1324 26 1 3.0933 5.9619 -0.8899 27 1 3.0934 5.9618 0.8901 28 1 5.4066 4.6080 0.0004 29 1 8.6225 7.7739 0.0021 30 1 2.9041 3.8846 2.1326 31 1 2.0825 1.5633 2.1325 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227771596.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:55 Heat of formation + Delta-G solvation = 22.195654 kcal Electronic energy + Delta-G solvation = -12556.844261 eV Core-core repulsion = 10416.854157 eV Total energy + Delta-G solvation = -2139.990103 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.28699 -35.41329 -33.61650 -31.41126 -30.68014 -29.35985 -25.81060 -23.21670 -22.45891 -21.73558 -20.26666 -17.77066 -15.85719 -15.44645 -14.90657 -14.56909 -13.79471 -13.75723 -13.60176 -13.17421 -12.78760 -12.55726 -12.25653 -12.03481 -11.50475 -11.22902 -11.17437 -10.86220 -10.65188 -10.47815 -10.10704 -9.58508 -8.89860 -8.67094 -8.30823 -7.22228 -5.75794 -3.11304 1.56383 1.65702 3.40002 3.44796 3.47040 3.97802 4.61322 4.77955 4.87276 5.20727 5.21059 5.28019 5.35971 5.49106 5.53322 5.66077 5.70266 5.76902 5.83349 5.96652 6.05677 6.18153 6.26982 6.48417 6.58057 6.67548 6.78466 7.09538 7.27045 8.00113 8.43366 9.22304 9.94718 10.15415 11.42543 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.055491 B = 0.007031 C = 0.006711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.467781 B = 3981.642719 C = 4171.020597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 C -0.094 4.094 4 C -0.123 4.123 5 C -0.104 4.104 6 C -0.086 4.086 7 C 0.191 3.809 8 N -0.751 5.751 9 C -0.245 4.245 10 H 0.091 0.909 11 C 0.006 3.994 12 N -0.934 5.934 13 Si 0.883 3.117 14 H -0.284 1.284 15 H -0.290 1.290 16 H -0.276 1.276 17 C -0.103 4.103 18 C -0.123 4.123 19 H 0.055 0.945 20 H 0.055 0.945 21 H 0.054 0.946 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.116 0.884 25 H 0.123 0.877 26 H 0.036 0.964 27 H 0.035 0.965 28 H 0.363 0.637 29 H 0.260 0.740 30 H 0.122 0.878 31 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.206 -14.939 -0.007 19.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.094 4.094 4 C -0.141 4.141 5 C -0.122 4.122 6 C -0.087 4.087 7 C 0.065 3.935 8 N -0.396 5.396 9 C -0.375 4.375 10 H 0.109 0.891 11 C -0.190 4.190 12 N -0.582 5.582 13 Si 0.713 3.287 14 H -0.210 1.210 15 H -0.217 1.217 16 H -0.203 1.203 17 C -0.122 4.122 18 C -0.141 4.141 19 H 0.074 0.926 20 H 0.074 0.926 21 H 0.073 0.927 22 H 0.087 0.913 23 H 0.087 0.913 24 H 0.134 0.866 25 H 0.141 0.859 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.195 0.805 29 H 0.070 0.930 30 H 0.140 0.860 31 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -13.156 -14.672 -0.003 19.707 hybrid contribution 0.871 -1.033 0.011 1.352 sum -12.286 -15.706 0.007 19.940 Atomic orbital electron populations 1.21743 0.94985 1.01316 1.02232 1.20500 0.95970 0.93028 1.02493 1.19809 1.00202 0.96003 0.93366 1.20961 1.00924 0.95014 0.97209 1.21129 0.98509 0.94522 0.98081 1.20335 0.97928 0.97511 0.92914 1.19637 0.85162 0.89348 0.99374 1.42706 1.00314 1.05466 1.91150 1.19080 0.89568 0.85739 1.43089 0.89104 1.24646 0.96079 0.96292 1.01958 1.69700 1.07029 1.23895 1.57589 0.86559 0.79724 0.84534 0.77878 1.21026 1.21658 1.20259 1.21131 0.98437 0.94547 0.98088 1.20959 1.00902 0.95027 0.97214 0.92593 0.92590 0.92712 0.91332 0.91327 0.86550 0.85934 0.94653 0.94714 0.80476 0.93035 0.85966 0.86562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.89 37.16 0.37 -0.90 16 2 C -0.08 -0.82 6.06 -27.89 -0.17 -0.99 16 3 C -0.09 -1.22 5.13 -104.63 -0.54 -1.76 16 4 C -0.12 -1.69 9.70 -39.58 -0.38 -2.08 16 5 C -0.10 -1.65 9.70 -39.59 -0.38 -2.03 16 6 C -0.09 -1.51 5.25 -104.62 -0.55 -2.06 16 7 C 0.19 3.91 6.38 -5.19 -0.03 3.88 16 8 N -0.75 -18.67 5.40 -61.08 -0.33 -19.00 16 9 C -0.25 -7.13 10.47 -15.06 -0.16 -7.28 16 10 H 0.09 2.79 8.06 -52.48 -0.42 2.37 16 11 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 12 N -0.93 -29.80 13.97 55.49 0.78 -29.02 16 13 Si 0.88 22.76 27.74 -169.99 -4.71 18.04 16 14 H -0.28 -7.25 7.11 56.52 0.40 -6.84 16 15 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 16 H -0.28 -6.83 6.52 56.52 0.37 -6.46 16 17 C -0.10 -1.65 9.70 -39.58 -0.38 -2.03 16 18 C -0.12 -1.70 9.70 -39.59 -0.38 -2.08 16 19 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 20 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 21 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 22 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 23 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 24 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 25 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 26 H 0.04 0.72 8.09 -51.93 -0.42 0.30 16 27 H 0.04 0.71 8.09 -51.93 -0.42 0.29 16 28 H 0.36 8.97 5.52 -40.82 -0.23 8.75 16 29 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 30 H 0.12 1.87 8.06 -52.48 -0.42 1.45 16 31 H 0.12 1.34 8.06 -52.48 -0.42 0.91 16 LS Contribution 266.23 15.07 4.01 4.01 Total: -1.00 -31.73 266.23 -7.42 -39.16 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -4.46 Total: 4.07 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: -2.71 Total: -17.26 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: 0.45 Total: -48.02 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -4.71 Total: 18.04 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -31.73 -7.42 -39.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227771596.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.352 kcal (2) G-P(sol) polarization free energy of solvation -31.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds