Wall clock time and date at job start Mon Mar 30 2020 02:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.38235 * 120.00282 * 269.72898 * 3 2 1 5 5 C 1.38231 * 120.00276 * 179.76303 * 4 3 2 6 6 C 1.38233 * 119.99729 * 0.48568 * 5 4 3 7 7 C 1.50701 * 120.00070 * 179.76597 * 6 5 4 8 8 N 1.46504 * 109.47396 * 270.02345 * 7 6 5 9 9 C 1.36930 * 119.99915 * 180.02562 * 8 7 6 10 10 H 1.08003 * 120.00102 * 0.02562 * 9 8 7 11 11 C 1.38811 * 119.99877 * 179.97438 * 9 8 7 12 12 N 1.31625 * 120.00238 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 120.00005 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.46812 * 89.99922 * 13 11 9 15 15 H 1.48497 * 109.47307 * 210.00132 * 13 11 9 16 16 H 1.48494 * 109.46969 * 330.00290 * 13 11 9 17 17 C 1.38239 * 120.00062 * 359.79046 * 6 5 4 18 18 C 1.38230 * 119.99880 * 359.95582 * 17 6 5 19 19 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 20 20 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 21 21 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 23 23 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 24 24 H 1.08008 * 119.99550 * 359.97438 * 4 3 2 25 25 H 1.07993 * 120.00327 * 180.25079 * 5 4 3 26 26 H 1.09002 * 109.47060 * 30.02215 * 7 6 5 27 27 H 1.09001 * 109.47380 * 150.02303 * 7 6 5 28 28 H 0.96992 * 119.99388 * 359.97438 * 8 7 6 29 29 H 0.96990 * 120.00173 * 180.02562 * 12 11 9 30 30 H 1.08008 * 119.99983 * 179.97438 * 17 6 5 31 31 H 1.08007 * 119.99843 * 180.02562 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0706 -1.1971 5 6 2.7243 3.3754 -1.1971 6 6 2.9543 4.0272 0.0000 7 6 3.4567 5.4480 0.0001 8 7 4.9217 5.4480 0.0000 9 6 5.6063 6.6339 0.0006 10 1 5.0663 7.5692 0.0015 11 6 6.9944 6.6340 0.0011 12 7 7.6526 7.7739 0.0022 13 14 7.9285 5.0162 0.0017 14 1 8.1764 4.5873 -1.3983 15 1 9.2258 5.1939 0.7022 16 1 7.1257 3.9814 0.7016 17 6 2.7240 3.3755 1.1972 18 6 2.2628 2.0724 1.1971 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 1.8933 -0.5139 0.8900 23 1 1.8934 -0.5138 -0.8899 24 1 2.0927 1.5598 -2.1325 25 1 2.9047 3.8844 -2.1324 26 1 3.0933 5.9619 -0.8899 27 1 3.0934 5.9618 0.8901 28 1 5.4066 4.6080 0.0004 29 1 8.6225 7.7739 0.0021 30 1 2.9041 3.8846 2.1326 31 1 2.0825 1.5633 2.1325 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227771596.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:54 Heat of formation + Delta-G solvation = 3.196556 kcal Electronic energy + Delta-G solvation = -12557.668123 eV Core-core repulsion = 10416.854157 eV Total energy + Delta-G solvation = -2140.813966 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.43301 -37.03474 -35.02086 -33.34653 -31.80606 -30.73831 -27.32627 -24.67504 -23.58636 -23.29754 -21.44105 -19.87965 -17.08302 -16.65978 -16.54792 -16.14406 -15.44082 -14.89139 -14.66806 -14.49092 -14.31641 -13.79984 -13.76153 -13.62975 -12.87518 -12.63352 -12.50687 -12.14838 -12.08242 -11.86905 -11.62813 -11.57659 -11.05319 -9.80555 -9.47378 -9.35741 -8.06704 -5.40816 0.39715 0.52305 1.35238 1.37603 1.45595 2.44824 2.81199 3.24407 3.81475 3.88528 3.93788 4.06718 4.17585 4.29274 4.54894 4.60129 4.62260 4.73544 4.88110 4.88695 5.09396 5.11901 5.18170 5.25797 5.42464 5.52621 5.70766 5.73341 5.81262 6.13737 6.17759 7.02393 7.77470 7.98679 9.14779 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.055491 B = 0.007031 C = 0.006711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.467781 B = 3981.642719 C = 4171.020597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 C -0.087 4.087 4 C -0.123 4.123 5 C -0.115 4.115 6 C -0.111 4.111 7 C 0.192 3.808 8 N -0.752 5.752 9 C -0.240 4.240 10 H 0.059 0.941 11 C -0.058 4.058 12 N -0.981 5.981 13 Si 0.954 3.046 14 H -0.276 1.276 15 H -0.290 1.290 16 H -0.258 1.258 17 C -0.115 4.115 18 C -0.124 4.124 19 H 0.052 0.948 20 H 0.051 0.949 21 H 0.072 0.928 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.142 0.858 25 H 0.122 0.878 26 H 0.033 0.967 27 H 0.032 0.968 28 H 0.365 0.635 29 H 0.260 0.740 30 H 0.121 0.879 31 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.058 -18.285 -0.024 23.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 C -0.087 4.087 4 C -0.141 4.141 5 C -0.133 4.133 6 C -0.111 4.111 7 C 0.066 3.934 8 N -0.398 5.398 9 C -0.371 4.371 10 H 0.077 0.923 11 C -0.250 4.250 12 N -0.632 5.632 13 Si 0.781 3.219 14 H -0.202 1.202 15 H -0.217 1.217 16 H -0.183 1.183 17 C -0.134 4.134 18 C -0.141 4.141 19 H 0.071 0.929 20 H 0.071 0.929 21 H 0.091 0.909 22 H 0.098 0.902 23 H 0.099 0.901 24 H 0.160 0.840 25 H 0.140 0.860 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.198 0.802 29 H 0.069 0.931 30 H 0.139 0.861 31 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -14.058 -18.041 -0.020 22.871 hybrid contribution 1.003 0.015 0.012 1.003 sum -13.055 -18.026 -0.008 22.257 Atomic orbital electron populations 1.21731 0.93988 1.02468 1.01914 1.20584 0.96690 0.90880 1.03734 1.20247 0.98290 0.97433 0.92711 1.21257 0.99936 0.94112 0.98803 1.21225 0.99020 0.95626 0.97438 1.20071 1.00565 0.96056 0.94432 1.19677 0.82720 0.92092 0.98885 1.42718 1.02125 1.03992 1.90971 1.19075 0.89927 0.86258 1.41795 0.92295 1.25464 0.97081 1.00126 1.02344 1.69873 1.07303 1.26550 1.59433 0.85418 0.78032 0.80182 0.78239 1.20233 1.21668 1.18317 1.21223 0.99037 0.95671 0.97442 1.21250 0.99952 0.94120 0.98815 0.92933 0.92947 0.90884 0.90158 0.90121 0.83999 0.86001 0.94892 0.95027 0.80201 0.93130 0.86131 0.84060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.89 71.98 0.71 -1.26 16 2 C -0.08 -1.29 6.06 29.85 0.18 -1.11 16 3 C -0.09 -1.96 5.13 -19.87 -0.10 -2.07 16 4 C -0.12 -3.04 9.70 22.27 0.22 -2.82 16 5 C -0.11 -3.48 9.70 22.27 0.22 -3.26 16 6 C -0.11 -3.80 5.25 -19.86 -0.10 -3.91 16 7 C 0.19 7.94 6.38 85.63 0.55 8.49 16 8 N -0.75 -37.52 5.40 -347.17 -1.87 -39.40 16 9 C -0.24 -14.26 10.47 84.03 0.88 -13.38 16 10 H 0.06 3.80 8.06 -2.91 -0.02 3.77 16 11 C -0.06 -3.54 5.50 84.86 0.47 -3.07 16 12 N -0.98 -64.05 13.97 21.65 0.30 -63.74 16 13 Si 0.95 47.03 27.74 68.60 1.90 48.93 16 14 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 15 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 16 H -0.26 -11.82 6.52 99.48 0.65 -11.17 16 17 C -0.12 -3.52 9.70 22.27 0.22 -3.30 16 18 C -0.12 -3.06 9.70 22.27 0.22 -2.84 16 19 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 20 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 21 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 22 H 0.08 1.12 8.09 -2.39 -0.02 1.10 16 23 H 0.08 1.12 8.08 -2.39 -0.02 1.10 16 24 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 25 H 0.12 3.60 8.06 -2.91 -0.02 3.58 16 26 H 0.03 1.37 8.09 -2.39 -0.02 1.35 16 27 H 0.03 1.32 8.09 -2.39 -0.02 1.30 16 28 H 0.36 17.68 5.52 -92.71 -0.51 17.17 16 29 H 0.26 16.06 8.31 -92.72 -0.77 15.29 16 30 H 0.12 3.61 8.06 -2.91 -0.02 3.59 16 31 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -68.39 266.23 4.30 -64.09 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: 0.53 Total: 18.66 kcal Atomic # 6 Polarization: -31.98 SS G_CDS: 3.44 Total: -28.53 kcal Atomic # 7 Polarization: -101.57 SS G_CDS: -1.57 Total: -103.14 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 1.90 Total: 48.93 kcal Total: -68.39 4.30 -64.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227771596.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.283 kcal (2) G-P(sol) polarization free energy of solvation -68.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds