Wall clock time and date at job start Mon Mar 30 2020 02:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38266 * 120.00178 * 2 1 4 4 C 1.38210 * 119.99998 * 179.74509 * 3 2 1 5 5 C 1.38251 * 120.00189 * 0.52270 * 4 3 2 6 6 C 1.38218 * 119.99806 * 359.75364 * 5 4 3 7 7 C 1.38210 * 119.99918 * 180.26980 * 2 1 3 8 8 C 1.50691 * 120.00061 * 0.02562 * 7 2 1 9 9 C 1.53006 * 109.47255 * 180.65363 * 8 7 2 10 10 N 1.46902 * 109.47462 * 300.65264 * 8 7 2 11 11 C 1.50694 * 109.47226 * 60.65653 * 8 7 2 12 12 H 1.08001 * 120.00306 * 0.02562 * 11 8 7 13 13 C 1.37881 * 120.00416 * 179.97438 * 11 8 7 14 14 N 1.31515 * 119.99496 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 120.00152 * 179.97438 * 13 11 8 16 16 H 1.48494 * 109.47037 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46689 * 120.00315 * 15 13 11 18 18 H 1.48497 * 109.47167 * 239.99990 * 15 13 11 19 19 H 1.08998 * 109.47389 * 264.61409 * 1 2 3 20 20 H 1.09001 * 109.47132 * 144.60890 * 1 2 3 21 21 H 1.09003 * 109.47295 * 24.60974 * 1 2 3 22 22 H 1.08000 * 119.99569 * 359.97438 * 3 2 1 23 23 H 1.07998 * 120.00141 * 180.29715 * 4 3 2 24 24 H 1.08002 * 120.00678 * 179.76795 * 5 4 3 25 25 H 1.08006 * 120.00090 * 180.02562 * 6 5 4 26 26 H 1.08998 * 109.46767 * 64.21883 * 9 8 7 27 27 H 1.08996 * 109.47399 * 184.21987 * 9 8 7 28 28 H 1.08999 * 109.47016 * 304.22123 * 9 8 7 29 29 H 1.00903 * 110.99743 * 296.05197 * 10 8 7 30 30 H 1.00901 * 110.99305 * 59.99762 * 10 8 7 31 31 H 0.97008 * 119.99554 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0053 5 6 4.2717 0.0001 -0.0003 6 6 3.5806 -1.1969 -0.0060 7 6 2.1980 -1.1969 -0.0056 8 6 1.4445 -2.5019 -0.0124 9 6 2.4387 -3.6650 -0.0013 10 7 0.5877 -2.5789 1.1784 11 6 0.5909 -2.5828 -1.2516 12 1 0.5940 -1.7705 -1.9634 13 6 -0.1934 -3.6941 -1.4773 14 7 -0.1960 -4.6839 -0.6113 15 14 -1.2521 -3.7939 -3.0131 16 1 -1.0707 -2.5607 -3.8203 17 1 -0.8477 -4.9752 -3.8170 18 1 -2.6788 -3.9254 -2.6231 19 1 -0.3634 -0.0965 1.0231 20 1 -0.3633 -0.8378 -0.5952 21 1 -0.3634 0.9343 -0.4280 22 1 1.6583 2.1327 -0.0004 23 1 4.1204 2.1326 0.0102 24 1 5.3517 0.0000 0.0001 25 1 4.1206 -2.1322 -0.0100 26 1 3.0050 -3.6499 0.9300 27 1 1.8966 -4.6071 -0.0817 28 1 3.1228 -3.5662 -0.8441 29 1 1.1412 -2.5916 2.0219 30 1 -0.0781 -1.8209 1.1942 31 1 -0.7475 -5.4659 -0.7703 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238492059.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:10 Heat of formation + Delta-G solvation = 27.526559 kcal Electronic energy + Delta-G solvation = -13613.346669 eV Core-core repulsion = 11473.587731 eV Total energy + Delta-G solvation = -2139.758938 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.11450 -35.31363 -32.08966 -31.63535 -29.30982 -27.41652 -26.02391 -25.15788 -22.26439 -20.50882 -19.08806 -16.40758 -15.76444 -14.76526 -14.52736 -14.10026 -13.76991 -13.11883 -13.05761 -12.61250 -12.35127 -11.63408 -11.28989 -11.01229 -10.94636 -10.83680 -10.66069 -10.47530 -10.15183 -10.00437 -9.68711 -8.99833 -8.35372 -8.11377 -7.80631 -6.97675 -5.84954 -4.00740 2.05979 2.12945 3.31215 3.40342 3.43757 4.41112 4.54120 5.33642 5.47427 5.54179 5.65245 5.85834 6.08085 6.17916 6.25606 6.35274 6.45723 6.62420 6.76643 6.90526 6.99925 7.10468 7.13947 7.20185 7.31944 7.61269 7.75294 7.84548 8.06652 8.34878 8.67780 9.04601 9.16428 9.64706 11.13937 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.039278 B = 0.012005 C = 0.010954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.703241 B = 2331.856793 C = 2555.534000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.076 4.076 3 C -0.133 4.133 4 C -0.143 4.143 5 C -0.136 4.136 6 C -0.125 4.125 7 C -0.075 4.075 8 C 0.276 3.724 9 C -0.129 4.129 10 N -0.808 5.808 11 C -0.519 4.519 12 H 0.057 0.943 13 C 0.084 3.916 14 N -0.841 5.841 15 Si 0.879 3.121 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.284 1.284 19 H 0.057 0.943 20 H 0.121 0.879 21 H 0.045 0.955 22 H 0.108 0.892 23 H 0.107 0.893 24 H 0.108 0.892 25 H 0.121 0.879 26 H 0.009 0.991 27 H 0.093 0.907 28 H 0.030 0.970 29 H 0.296 0.704 30 H 0.323 0.677 31 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.901 7.034 1.696 8.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.076 4.076 3 C -0.151 4.151 4 C -0.162 4.162 5 C -0.155 4.155 6 C -0.144 4.144 7 C -0.078 4.078 8 C 0.185 3.815 9 C -0.187 4.187 10 N -0.336 5.336 11 C -0.558 4.558 12 H 0.075 0.925 13 C -0.122 4.122 14 N -0.475 5.475 15 Si 0.707 3.293 16 H -0.199 1.199 17 H -0.211 1.211 18 H -0.210 1.210 19 H 0.076 0.924 20 H 0.139 0.861 21 H 0.064 0.936 22 H 0.126 0.874 23 H 0.125 0.875 24 H 0.126 0.874 25 H 0.139 0.861 26 H 0.028 0.972 27 H 0.112 0.888 28 H 0.049 0.951 29 H 0.106 0.894 30 H 0.138 0.862 31 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.546 6.117 1.450 7.218 hybrid contribution 0.001 1.031 -0.611 1.199 sum 3.547 7.148 0.839 8.024 Atomic orbital electron populations 1.21363 0.91600 1.04287 1.02313 1.19824 0.96350 0.92352 0.99076 1.20969 0.94147 0.97235 1.02718 1.20863 0.94307 0.97281 1.03731 1.21022 0.98869 0.93034 1.02538 1.21308 0.94657 0.97570 1.00825 1.21599 0.93808 0.98272 0.94092 1.17451 0.88943 0.84856 0.90266 1.21832 0.97303 1.03523 0.96044 1.59330 1.19550 1.52280 1.02473 1.20803 1.26593 1.03637 1.04750 0.92491 1.24917 0.96279 0.95630 0.95381 1.70037 1.37632 1.06344 1.33528 0.86763 0.80607 0.78036 0.83898 1.19864 1.21120 1.21039 0.92442 0.86110 0.93627 0.87358 0.87473 0.87396 0.86120 0.97225 0.88824 0.95088 0.89371 0.86203 0.93555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 8.09 36.00 0.29 -2.36 16 2 C -0.08 -1.52 5.65 -104.62 -0.59 -2.11 16 3 C -0.13 -2.36 9.68 -39.58 -0.38 -2.74 16 4 C -0.14 -2.40 10.05 -39.59 -0.40 -2.79 16 5 C -0.14 -2.36 10.05 -39.58 -0.40 -2.76 16 6 C -0.13 -2.47 8.98 -39.58 -0.36 -2.83 16 7 C -0.08 -1.62 4.90 -104.63 -0.51 -2.14 16 8 C 0.28 6.55 0.53 -133.91 -0.07 6.48 16 9 C -0.13 -3.06 7.24 37.16 0.27 -2.79 16 10 N -0.81 -18.66 8.16 -1.14 -0.01 -18.67 16 11 C -0.52 -13.56 5.66 -34.44 -0.20 -13.75 16 12 H 0.06 1.53 7.05 -52.49 -0.37 1.16 16 13 C 0.08 2.24 5.22 -17.82 -0.09 2.15 16 14 N -0.84 -23.12 10.78 55.43 0.60 -22.52 16 15 Si 0.88 20.68 29.54 -169.99 -5.02 15.65 16 16 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 19 H 0.06 1.01 6.90 -51.93 -0.36 0.65 16 20 H 0.12 2.65 4.39 -51.93 -0.23 2.43 16 21 H 0.04 0.76 8.05 -51.93 -0.42 0.34 16 22 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 23 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 24 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 25 H 0.12 2.30 5.89 -52.48 -0.31 1.99 16 26 H 0.01 0.19 7.79 -51.93 -0.40 -0.21 16 27 H 0.09 2.47 5.97 -51.93 -0.31 2.16 16 28 H 0.03 0.70 7.21 -51.93 -0.37 0.33 16 29 H 0.30 6.36 8.98 -39.29 -0.35 6.00 16 30 H 0.32 7.09 5.35 -39.29 -0.21 6.88 16 31 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 245.91 15.07 3.71 3.71 Total: -1.00 -27.65 245.91 -6.90 -34.55 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -3.74 Total: 12.92 kcal Atomic # 6 Polarization: -23.20 SS G_CDS: -2.44 Total: -25.64 kcal Atomic # 7 Polarization: -41.78 SS G_CDS: 0.59 Total: -41.19 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -27.65 -6.90 -34.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238492059.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.074 kcal (2) G-P(sol) polarization free energy of solvation -27.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds