Wall clock time and date at job start Mon Mar 30 2020 02:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38266 * 120.00178 * 2 1 4 4 C 1.38210 * 119.99998 * 179.74509 * 3 2 1 5 5 C 1.38251 * 120.00189 * 0.52270 * 4 3 2 6 6 C 1.38218 * 119.99806 * 359.75364 * 5 4 3 7 7 C 1.38210 * 119.99918 * 180.26980 * 2 1 3 8 8 C 1.50691 * 120.00061 * 0.02562 * 7 2 1 9 9 C 1.53006 * 109.47255 * 180.65363 * 8 7 2 10 10 N 1.46902 * 109.47462 * 300.65264 * 8 7 2 11 11 C 1.50694 * 109.47226 * 60.65653 * 8 7 2 12 12 H 1.08001 * 120.00306 * 0.02562 * 11 8 7 13 13 C 1.37881 * 120.00416 * 179.97438 * 11 8 7 14 14 N 1.31515 * 119.99496 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 120.00152 * 179.97438 * 13 11 8 16 16 H 1.48494 * 109.47037 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46689 * 120.00315 * 15 13 11 18 18 H 1.48497 * 109.47167 * 239.99990 * 15 13 11 19 19 H 1.08998 * 109.47389 * 264.61409 * 1 2 3 20 20 H 1.09001 * 109.47132 * 144.60890 * 1 2 3 21 21 H 1.09003 * 109.47295 * 24.60974 * 1 2 3 22 22 H 1.08000 * 119.99569 * 359.97438 * 3 2 1 23 23 H 1.07998 * 120.00141 * 180.29715 * 4 3 2 24 24 H 1.08002 * 120.00678 * 179.76795 * 5 4 3 25 25 H 1.08006 * 120.00090 * 180.02562 * 6 5 4 26 26 H 1.08998 * 109.46767 * 64.21883 * 9 8 7 27 27 H 1.08996 * 109.47399 * 184.21987 * 9 8 7 28 28 H 1.08999 * 109.47016 * 304.22123 * 9 8 7 29 29 H 1.00903 * 110.99743 * 296.05197 * 10 8 7 30 30 H 1.00901 * 110.99305 * 59.99762 * 10 8 7 31 31 H 0.97008 * 119.99554 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0053 5 6 4.2717 0.0001 -0.0003 6 6 3.5806 -1.1969 -0.0060 7 6 2.1980 -1.1969 -0.0056 8 6 1.4445 -2.5019 -0.0124 9 6 2.4387 -3.6650 -0.0013 10 7 0.5877 -2.5789 1.1784 11 6 0.5909 -2.5828 -1.2516 12 1 0.5940 -1.7705 -1.9634 13 6 -0.1934 -3.6941 -1.4773 14 7 -0.1960 -4.6839 -0.6113 15 14 -1.2521 -3.7939 -3.0131 16 1 -1.0707 -2.5607 -3.8203 17 1 -0.8477 -4.9752 -3.8170 18 1 -2.6788 -3.9254 -2.6231 19 1 -0.3634 -0.0965 1.0231 20 1 -0.3633 -0.8378 -0.5952 21 1 -0.3634 0.9343 -0.4280 22 1 1.6583 2.1327 -0.0004 23 1 4.1204 2.1326 0.0102 24 1 5.3517 0.0000 0.0001 25 1 4.1206 -2.1322 -0.0100 26 1 3.0050 -3.6499 0.9300 27 1 1.8966 -4.6071 -0.0817 28 1 3.1228 -3.5662 -0.8441 29 1 1.1412 -2.5916 2.0219 30 1 -0.0781 -1.8209 1.1942 31 1 -0.7475 -5.4659 -0.7703 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238492059.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:10 Heat of formation + Delta-G solvation = 10.997118 kcal Electronic energy + Delta-G solvation = -13614.063440 eV Core-core repulsion = 11473.587731 eV Total energy + Delta-G solvation = -2140.475708 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.62140 -37.01067 -33.75046 -33.38418 -30.88407 -29.13754 -27.67984 -27.01888 -23.84612 -21.96937 -20.78050 -18.29054 -17.33009 -16.52337 -16.18599 -15.67121 -15.41346 -14.75145 -14.69600 -14.29374 -13.75759 -13.42183 -12.82237 -12.75337 -12.65290 -12.56581 -12.34822 -12.18953 -12.07547 -11.62719 -11.42152 -10.90879 -10.36397 -9.55836 -9.30800 -8.72772 -7.85523 -6.05422 0.64244 0.69833 1.42459 1.47048 1.55170 2.49986 3.05623 3.32050 4.15142 4.20626 4.32236 4.38360 4.45577 4.68549 4.75496 4.91038 4.96316 5.04192 5.12644 5.26035 5.34406 5.39491 5.62570 5.71500 5.78075 5.80846 5.96915 6.19727 6.36078 6.43326 6.74007 7.21247 7.34748 7.61913 9.11528 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.039278 B = 0.012005 C = 0.010954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.703241 B = 2331.856793 C = 2555.534000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.095 4.095 3 C -0.134 4.134 4 C -0.136 4.136 5 C -0.134 4.134 6 C -0.142 4.142 7 C -0.104 4.104 8 C 0.273 3.727 9 C -0.121 4.121 10 N -0.819 5.819 11 C -0.520 4.520 12 H 0.043 0.957 13 C 0.042 3.958 14 N -0.867 5.867 15 Si 0.934 3.066 16 H -0.273 1.273 17 H -0.286 1.286 18 H -0.283 1.283 19 H 0.065 0.935 20 H 0.088 0.912 21 H 0.067 0.933 22 H 0.135 0.865 23 H 0.145 0.855 24 H 0.139 0.861 25 H 0.118 0.882 26 H 0.023 0.977 27 H 0.064 0.936 28 H 0.029 0.971 29 H 0.304 0.696 30 H 0.327 0.673 31 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.754 9.085 1.628 10.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.095 4.095 3 C -0.152 4.152 4 C -0.154 4.154 5 C -0.152 4.152 6 C -0.161 4.161 7 C -0.107 4.107 8 C 0.182 3.818 9 C -0.179 4.179 10 N -0.348 5.348 11 C -0.559 4.559 12 H 0.062 0.938 13 C -0.162 4.162 14 N -0.503 5.503 15 Si 0.761 3.239 16 H -0.198 1.198 17 H -0.212 1.212 18 H -0.209 1.209 19 H 0.083 0.917 20 H 0.106 0.894 21 H 0.086 0.914 22 H 0.153 0.847 23 H 0.163 0.837 24 H 0.157 0.843 25 H 0.136 0.864 26 H 0.042 0.958 27 H 0.083 0.917 28 H 0.048 0.952 29 H 0.115 0.885 30 H 0.142 0.858 31 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 4.401 8.177 1.378 9.388 hybrid contribution -0.196 0.481 -0.570 0.771 sum 4.206 8.658 0.807 9.659 Atomic orbital electron populations 1.21216 0.91514 1.03925 1.02313 1.19993 0.96730 0.92869 0.99933 1.21303 0.94996 0.97318 1.01611 1.21327 0.94078 0.98590 1.01401 1.21373 1.00531 0.92269 1.01055 1.21414 0.94156 0.98831 1.01682 1.21403 0.94658 0.97676 0.96919 1.17318 0.88797 0.86226 0.89485 1.21697 0.97187 1.02270 0.96711 1.59216 1.20027 1.52785 1.02749 1.20971 1.26615 1.02889 1.05381 0.93848 1.25489 0.97498 0.95586 0.97619 1.70160 1.38472 1.06689 1.34961 0.85911 0.79176 0.77679 0.81159 1.19805 1.21185 1.20943 0.91664 0.89399 0.91430 0.84673 0.83687 0.84287 0.86385 0.95805 0.91727 0.95168 0.88550 0.85754 0.93884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.93 8.09 71.23 0.58 -4.36 16 2 C -0.09 -3.66 5.65 -19.87 -0.11 -3.77 16 3 C -0.13 -4.32 9.68 22.27 0.22 -4.10 16 4 C -0.14 -3.95 10.05 22.27 0.22 -3.73 16 5 C -0.13 -4.21 10.05 22.27 0.22 -3.98 16 6 C -0.14 -5.43 8.98 22.27 0.20 -5.23 16 7 C -0.10 -4.43 4.90 -19.87 -0.10 -4.53 16 8 C 0.27 13.07 0.53 2.03 0.00 13.07 16 9 C -0.12 -5.81 7.24 71.98 0.52 -5.29 16 10 N -0.82 -38.19 8.16 -157.52 -1.29 -39.48 16 11 C -0.52 -27.54 5.66 25.60 0.14 -27.40 16 12 H 0.04 2.37 7.05 -2.91 -0.02 2.34 16 13 C 0.04 2.24 5.22 84.66 0.44 2.69 16 14 N -0.87 -48.64 10.78 21.45 0.23 -48.41 16 15 Si 0.93 43.13 29.54 68.60 2.03 45.16 16 16 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 17 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 18 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 19 H 0.06 2.24 6.90 -2.39 -0.02 2.23 16 20 H 0.09 3.88 4.39 -2.39 -0.01 3.87 16 21 H 0.07 2.12 8.05 -2.39 -0.02 2.10 16 22 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 23 H 0.15 3.13 8.06 -2.91 -0.02 3.10 16 24 H 0.14 3.43 8.06 -2.91 -0.02 3.40 16 25 H 0.12 4.43 5.89 -2.91 -0.02 4.41 16 26 H 0.02 1.02 7.79 -2.39 -0.02 1.00 16 27 H 0.06 3.49 5.97 -2.39 -0.01 3.48 16 28 H 0.03 1.39 7.21 -2.39 -0.02 1.37 16 29 H 0.30 13.12 8.98 -89.69 -0.81 12.32 16 30 H 0.33 14.49 5.35 -89.69 -0.48 14.01 16 31 H 0.25 13.65 8.31 -92.70 -0.77 12.88 16 Total: -1.00 -58.86 245.91 3.17 -55.69 By element: Atomic # 1 Polarization: 33.79 SS G_CDS: -0.14 Total: 33.66 kcal Atomic # 6 Polarization: -48.96 SS G_CDS: 2.34 Total: -46.62 kcal Atomic # 7 Polarization: -86.83 SS G_CDS: -1.05 Total: -87.88 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -58.86 3.17 -55.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238492059.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.688 kcal (2) G-P(sol) polarization free energy of solvation -58.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds