Wall clock time and date at job start Mon Mar 30 2020 02:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38259 * 120.00205 * 2 1 4 4 C 1.38215 * 120.00409 * 180.02562 * 3 2 1 5 5 C 1.38258 * 119.99431 * 359.95417 * 4 3 2 6 6 C 1.38207 * 120.00405 * 359.97438 * 5 4 3 7 7 C 1.50703 * 120.00016 * 180.02562 * 6 5 4 8 8 C 1.52995 * 109.47578 * 89.99803 * 7 6 5 9 9 N 1.46899 * 109.47092 * 209.99963 * 7 6 5 10 10 C 1.50699 * 109.46838 * 329.99801 * 7 6 5 11 11 H 1.07997 * 120.00474 * 0.21726 * 10 7 6 12 12 C 1.37877 * 119.99778 * 180.21851 * 10 7 6 13 13 N 1.31517 * 120.00393 * 3.02046 * 12 10 7 14 14 Si 1.86801 * 119.99839 * 183.01656 * 12 10 7 15 15 H 1.48497 * 109.46942 * 84.97685 * 14 12 10 16 16 H 1.48509 * 109.47106 * 204.97056 * 14 12 10 17 17 H 1.48498 * 109.47397 * 324.97169 * 14 12 10 18 18 C 1.38209 * 120.00263 * 179.71724 * 2 1 3 19 19 H 1.08999 * 109.47151 * 90.00157 * 1 2 3 20 20 H 1.08997 * 109.47250 * 210.00525 * 1 2 3 21 21 H 1.08999 * 109.47010 * 330.00302 * 1 2 3 22 22 H 1.08007 * 119.99963 * 359.97064 * 3 2 1 23 23 H 1.07995 * 119.99842 * 179.97438 * 4 3 2 24 24 H 1.08007 * 119.99734 * 180.02562 * 5 4 3 25 25 H 1.09001 * 109.47095 * 53.96253 * 8 7 6 26 26 H 1.08999 * 109.47583 * 173.96797 * 8 7 6 27 27 H 1.09001 * 109.47108 * 293.96872 * 8 7 6 28 28 H 1.00902 * 111.00265 * 59.99521 * 9 7 6 29 29 H 1.00894 * 111.00493 * 183.95175 * 9 7 6 30 30 H 0.96994 * 120.00162 * 180.02562 * 13 12 10 31 31 H 1.08009 * 119.99769 * 359.97438 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0000 -0.0001 6 6 3.5806 -1.1969 0.0014 7 6 4.3342 -2.5020 0.0024 8 6 4.5898 -2.9423 1.4452 9 7 3.5400 -3.5265 -0.6887 10 6 5.6506 -2.3225 -0.7087 11 1 5.9167 -1.3589 -1.1172 12 6 6.5153 -3.3886 -0.8379 13 7 6.1663 -4.5761 -0.3933 14 14 8.1827 -3.1463 -1.6446 15 1 9.1561 -2.6620 -0.6332 16 1 8.6535 -4.4382 -2.2058 17 1 8.0640 -2.1464 -2.7360 18 6 2.1981 -1.1969 0.0059 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3633 -0.8899 0.5139 21 1 -0.3633 0.8900 0.5138 22 1 1.6583 2.1327 -0.0005 23 1 4.1204 2.1327 -0.0010 24 1 5.3517 0.0000 -0.0001 25 1 3.6459 -2.9685 1.9897 26 1 5.0386 -3.9356 1.4479 27 1 5.2670 -2.2363 1.9259 28 1 3.3576 -3.2590 -1.6443 29 1 3.9943 -4.4264 -0.6456 30 1 6.7748 -5.3260 -0.4838 31 1 1.6580 -2.1322 0.0109 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238544504.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:14 Heat of formation + Delta-G solvation = -3.682468 kcal Electronic energy + Delta-G solvation = -13279.505974 eV Core-core repulsion = 11138.393711 eV Total energy + Delta-G solvation = -2141.112263 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.32131 -37.28908 -33.75667 -33.15378 -30.75139 -29.26359 -27.80917 -26.90721 -23.86673 -22.28879 -20.54499 -18.15163 -17.53041 -16.53875 -15.95470 -15.85260 -15.12246 -14.80012 -14.53124 -14.09631 -13.78217 -13.44744 -13.04413 -12.97786 -12.82918 -12.57011 -12.45455 -12.29985 -12.07030 -11.84185 -11.46099 -11.09441 -10.63430 -9.45170 -9.22835 -9.07140 -8.03909 -6.27127 0.70098 0.75756 1.37154 1.39981 1.47406 2.38958 3.07113 3.16362 4.17594 4.19678 4.25576 4.46841 4.58861 4.71863 4.88451 4.93269 4.97064 5.04482 5.12290 5.15265 5.32972 5.47707 5.54875 5.69709 5.79801 5.86227 5.92752 6.07706 6.23173 6.42665 6.75552 7.04850 7.19310 7.49147 8.88017 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.045943 B = 0.010119 C = 0.009003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.309879 B = 2766.346470 C = 3109.166751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.104 4.104 3 C -0.140 4.140 4 C -0.128 4.128 5 C -0.139 4.139 6 C -0.060 4.060 7 C 0.256 3.744 8 C -0.107 4.107 9 N -0.836 5.836 10 C -0.553 4.553 11 H 0.051 0.949 12 C 0.027 3.973 13 N -0.907 5.907 14 Si 0.949 3.051 15 H -0.279 1.279 16 H -0.284 1.284 17 H -0.276 1.276 18 C -0.124 4.124 19 H 0.075 0.925 20 H 0.064 0.936 21 H 0.081 0.919 22 H 0.144 0.856 23 H 0.137 0.863 24 H 0.108 0.892 25 H 0.024 0.976 26 H 0.058 0.942 27 H 0.025 0.975 28 H 0.313 0.687 29 H 0.346 0.654 30 H 0.264 0.736 31 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.947 8.005 0.363 10.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.104 4.104 3 C -0.158 4.158 4 C -0.146 4.146 5 C -0.158 4.158 6 C -0.060 4.060 7 C 0.164 3.836 8 C -0.165 4.165 9 N -0.365 5.365 10 C -0.593 4.593 11 H 0.069 0.931 12 C -0.173 4.173 13 N -0.547 5.547 14 Si 0.776 3.224 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.201 1.201 18 C -0.142 4.142 19 H 0.094 0.906 20 H 0.083 0.917 21 H 0.100 0.900 22 H 0.162 0.838 23 H 0.155 0.845 24 H 0.126 0.874 25 H 0.043 0.957 26 H 0.077 0.923 27 H 0.044 0.956 28 H 0.122 0.878 29 H 0.162 0.838 30 H 0.074 0.926 31 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.447 7.952 0.948 10.936 hybrid contribution 2.235 -0.394 -1.019 2.488 sum -5.212 7.559 -0.071 9.181 Atomic orbital electron populations 1.20755 0.89282 1.03251 1.02778 1.20288 0.97501 0.92783 0.99793 1.21204 0.93889 0.98033 1.02673 1.21337 0.95031 0.97553 1.00694 1.21231 0.99995 0.92766 1.01804 1.20353 0.94076 0.95586 0.96032 1.17310 0.88393 0.86196 0.91703 1.21505 0.97597 1.01282 0.96126 1.59416 1.51489 1.07256 1.18329 1.22194 1.04202 0.96306 1.36590 0.93066 1.25595 1.00970 0.95081 0.95630 1.69768 1.37287 1.00339 1.47320 0.85717 0.80813 0.77237 0.78655 1.20443 1.20939 1.20104 1.21070 0.93654 0.98052 1.01444 0.90624 0.91689 0.90014 0.83786 0.84543 0.87412 0.95691 0.92330 0.95563 0.87810 0.83819 0.92645 0.86306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.45 10.01 71.23 0.71 -1.73 16 2 C -0.10 -3.35 5.88 -19.87 -0.12 -3.46 16 3 C -0.14 -4.23 9.70 22.27 0.22 -4.01 16 4 C -0.13 -4.31 10.05 22.27 0.22 -4.09 16 5 C -0.14 -5.82 8.89 22.27 0.20 -5.62 16 6 C -0.06 -2.67 4.78 -19.87 -0.10 -2.77 16 7 C 0.26 12.65 0.76 2.03 0.00 12.65 16 8 C -0.11 -5.32 8.41 71.98 0.61 -4.72 16 9 N -0.84 -40.18 7.73 -157.52 -1.22 -41.40 16 10 C -0.55 -29.52 7.55 25.60 0.19 -29.32 16 11 H 0.05 2.76 6.03 -2.91 -0.02 2.75 16 12 C 0.03 1.45 5.22 84.65 0.44 1.89 16 13 N -0.91 -48.94 9.66 21.45 0.21 -48.73 16 14 Si 0.95 42.87 29.54 68.60 2.03 44.90 16 15 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 16 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 17 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 18 C -0.12 -4.90 8.97 22.27 0.20 -4.70 16 19 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 20 H 0.06 1.50 8.08 -2.39 -0.02 1.48 16 21 H 0.08 1.54 8.09 -2.39 -0.02 1.52 16 22 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 23 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 24 H 0.11 4.74 6.42 -2.91 -0.02 4.72 16 25 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.06 3.12 6.38 -2.39 -0.02 3.10 16 27 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.31 14.79 8.98 -89.69 -0.81 13.99 16 29 H 0.35 17.78 6.87 -89.70 -0.62 17.17 16 30 H 0.26 13.70 8.31 -92.71 -0.77 12.93 16 31 H 0.12 4.77 7.41 -2.91 -0.02 4.74 16 Total: -1.00 -56.45 255.58 3.31 -53.14 By element: Atomic # 1 Polarization: 38.26 SS G_CDS: -0.29 Total: 37.97 kcal Atomic # 6 Polarization: -48.46 SS G_CDS: 2.58 Total: -45.88 kcal Atomic # 7 Polarization: -89.12 SS G_CDS: -1.01 Total: -90.13 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -56.45 3.31 -53.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238544504.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.455 kcal (2) G-P(sol) polarization free energy of solvation -56.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds