Wall clock time and date at job start Mon Mar 30 2020 02:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38254 * 119.99603 * 2 1 4 4 C 1.38213 * 119.99701 * 179.97438 * 3 2 1 5 5 C 1.38263 * 120.00114 * 359.75124 * 4 3 2 6 6 C 1.38221 * 119.99552 * 0.50349 * 5 4 3 7 7 C 1.50699 * 119.99845 * 179.76779 * 6 5 4 8 8 C 1.53006 * 109.46866 * 269.72845 * 7 6 5 9 9 N 1.46899 * 109.47244 * 149.72877 * 7 6 5 10 10 C 1.50698 * 109.46911 * 29.72635 * 7 6 5 11 11 H 1.07993 * 120.00472 * 359.97438 * 10 7 6 12 12 C 1.37884 * 119.99909 * 180.02562 * 10 7 6 13 13 N 1.31522 * 119.99817 * 0.02562 * 12 10 7 14 14 Si 1.86798 * 120.00071 * 180.02562 * 12 10 7 15 15 H 1.48496 * 109.46966 * 60.00398 * 14 12 10 16 16 H 1.48503 * 109.46926 * 179.97438 * 14 12 10 17 17 H 1.48492 * 109.47227 * 300.00019 * 14 12 10 18 18 C 1.38212 * 120.00015 * 179.97438 * 2 1 3 19 19 H 1.08998 * 109.47109 * 270.02204 * 1 2 3 20 20 H 1.08997 * 109.47001 * 30.01879 * 1 2 3 21 21 H 1.09001 * 109.47004 * 150.01565 * 1 2 3 22 22 H 1.07994 * 120.00668 * 0.02562 * 3 2 1 23 23 H 1.07997 * 120.00030 * 180.02562 * 4 3 2 24 24 H 1.07997 * 120.00127 * 180.27444 * 5 4 3 25 25 H 1.09001 * 109.46801 * 60.00064 * 8 7 6 26 26 H 1.09001 * 109.46998 * 179.97438 * 8 7 6 27 27 H 1.09000 * 109.47050 * 299.99952 * 8 7 6 28 28 H 1.00897 * 110.99811 * 176.04511 * 9 7 6 29 29 H 1.00902 * 110.99545 * 300.00127 * 9 7 6 30 30 H 0.96991 * 120.00052 * 179.97438 * 13 12 10 31 31 H 1.07997 * 119.99946 * 0.02562 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0063 6 6 3.5806 -1.1970 0.0009 7 6 4.3341 -2.5021 0.0019 8 6 4.5897 -2.9444 -1.4403 9 7 3.5400 -3.5255 0.6946 10 6 5.6506 -2.3214 0.7127 11 1 5.9154 -1.3579 1.1223 12 6 6.5176 -3.3861 0.8391 13 7 6.1958 -4.5591 0.3389 14 14 8.1492 -3.1624 1.7207 15 1 7.9006 -2.7341 3.1207 16 1 8.8917 -4.4485 1.7216 17 1 8.9519 -2.1272 1.0214 18 6 2.1981 -1.1970 0.0005 19 1 -0.3633 0.0004 1.0276 20 1 -0.3633 0.8898 -0.5141 21 1 -0.3633 -0.8901 -0.5136 22 1 1.6583 2.1326 0.0004 23 1 4.1203 2.1327 0.0010 24 1 5.3517 0.0001 0.0112 25 1 5.1789 -2.1850 -1.9543 26 1 5.1351 -3.8882 -1.4397 27 1 3.6374 -3.0750 -1.9544 28 1 3.9944 -4.4254 0.6528 29 1 3.3577 -3.2564 1.6498 30 1 6.8058 -5.3080 0.4274 31 1 1.6581 -2.1322 0.0005 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238547838.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:16 Heat of formation + Delta-G solvation = -3.349628 kcal Electronic energy + Delta-G solvation = -13279.620298 eV Core-core repulsion = 11138.522468 eV Total energy + Delta-G solvation = -2141.097830 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.32258 -37.29364 -33.75816 -33.15698 -30.75967 -29.25009 -27.81254 -26.90966 -23.86197 -22.29103 -20.54387 -18.15074 -17.53386 -16.54343 -15.95882 -15.85543 -15.13128 -14.80421 -14.53090 -14.10540 -13.78363 -13.40307 -13.03927 -12.99035 -12.83046 -12.58049 -12.43802 -12.30396 -12.05693 -11.85291 -11.47629 -11.09464 -10.60552 -9.45468 -9.23210 -9.07220 -8.03565 -6.27406 0.69898 0.75674 1.38265 1.39985 1.46536 2.39012 3.06888 3.16503 4.17402 4.19632 4.25464 4.46418 4.58485 4.71885 4.88254 4.93198 4.98724 5.05216 5.12170 5.16299 5.33063 5.47622 5.55076 5.68940 5.79708 5.88787 5.94569 6.07952 6.23799 6.42529 6.75348 7.03232 7.17883 7.48182 8.88119 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.045856 B = 0.010110 C = 0.009017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.459303 B = 2768.835415 C = 3104.587793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.104 4.104 3 C -0.140 4.140 4 C -0.128 4.128 5 C -0.140 4.140 6 C -0.060 4.060 7 C 0.256 3.744 8 C -0.111 4.111 9 N -0.836 5.836 10 C -0.554 4.554 11 H 0.051 0.949 12 C 0.027 3.973 13 N -0.907 5.907 14 Si 0.949 3.051 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.277 1.277 18 C -0.124 4.124 19 H 0.075 0.925 20 H 0.081 0.919 21 H 0.064 0.936 22 H 0.144 0.856 23 H 0.137 0.863 24 H 0.108 0.892 25 H 0.024 0.976 26 H 0.064 0.936 27 H 0.023 0.977 28 H 0.345 0.655 29 H 0.314 0.686 30 H 0.264 0.736 31 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.993 7.933 -0.173 10.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.104 4.104 3 C -0.158 4.158 4 C -0.146 4.146 5 C -0.158 4.158 6 C -0.061 4.061 7 C 0.164 3.836 8 C -0.170 4.170 9 N -0.364 5.364 10 C -0.593 4.593 11 H 0.069 0.931 12 C -0.173 4.173 13 N -0.547 5.547 14 Si 0.776 3.224 15 H -0.203 1.203 16 H -0.209 1.209 17 H -0.202 1.202 18 C -0.142 4.142 19 H 0.094 0.906 20 H 0.100 0.900 21 H 0.083 0.917 22 H 0.162 0.838 23 H 0.154 0.846 24 H 0.126 0.874 25 H 0.043 0.957 26 H 0.083 0.917 27 H 0.042 0.958 28 H 0.160 0.840 29 H 0.123 0.877 30 H 0.074 0.926 31 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.489 7.881 -0.765 10.899 hybrid contribution 2.209 -0.382 1.053 2.476 sum -5.281 7.499 0.288 9.176 Atomic orbital electron populations 1.20757 0.89277 1.03250 1.02782 1.20291 0.97504 0.92782 0.99783 1.21200 0.93883 0.98036 1.02678 1.21338 0.95035 0.97548 1.00693 1.21234 0.99986 0.92773 1.01819 1.20358 0.94086 0.95598 0.96018 1.17303 0.88357 0.86158 0.91731 1.21554 0.98026 1.01346 0.96027 1.59404 1.51437 1.07144 1.18381 1.22178 1.04227 0.96423 1.36483 0.93059 1.25599 1.00751 0.95168 0.95775 1.69780 1.37798 1.01250 1.45840 0.85757 0.80444 0.77191 0.79027 1.20312 1.20902 1.20217 1.21068 0.93652 0.98059 1.01451 0.90613 0.90016 0.91691 0.83781 0.84551 0.87436 0.95704 0.91717 0.95784 0.84049 0.87725 0.92645 0.86296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.45 10.01 71.24 0.71 -1.73 16 2 C -0.10 -3.35 5.88 -19.87 -0.12 -3.46 16 3 C -0.14 -4.23 9.70 22.27 0.22 -4.02 16 4 C -0.13 -4.32 10.05 22.27 0.22 -4.09 16 5 C -0.14 -5.83 8.89 22.27 0.20 -5.64 16 6 C -0.06 -2.68 4.79 -19.87 -0.10 -2.77 16 7 C 0.26 12.68 0.76 2.04 0.00 12.68 16 8 C -0.11 -5.57 8.49 71.98 0.61 -4.96 16 9 N -0.84 -40.02 7.73 -157.51 -1.22 -41.24 16 10 C -0.55 -29.51 7.55 25.60 0.19 -29.32 16 11 H 0.05 2.76 6.01 -2.91 -0.02 2.74 16 12 C 0.03 1.44 5.22 84.66 0.44 1.88 16 13 N -0.91 -48.91 9.57 21.45 0.21 -48.70 16 14 Si 0.95 42.82 29.54 68.60 2.03 44.85 16 15 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 16 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 17 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 18 C -0.12 -4.90 8.97 22.27 0.20 -4.70 16 19 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 20 H 0.08 1.54 8.09 -2.39 -0.02 1.52 16 21 H 0.06 1.50 8.09 -2.39 -0.02 1.48 16 22 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 23 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 24 H 0.11 4.75 6.41 -2.91 -0.02 4.73 16 25 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.06 3.47 6.07 -2.39 -0.01 3.46 16 27 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.34 17.63 7.00 -89.70 -0.63 17.00 16 29 H 0.31 14.74 8.98 -89.69 -0.81 13.93 16 30 H 0.26 13.72 8.31 -92.71 -0.77 12.95 16 31 H 0.12 4.77 7.40 -2.91 -0.02 4.75 16 Total: -1.00 -56.39 255.37 3.30 -53.09 By element: Atomic # 1 Polarization: 38.44 SS G_CDS: -0.30 Total: 38.14 kcal Atomic # 6 Polarization: -48.72 SS G_CDS: 2.59 Total: -46.14 kcal Atomic # 7 Polarization: -88.93 SS G_CDS: -1.01 Total: -89.94 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -56.39 3.30 -53.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238547838.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.741 kcal (2) G-P(sol) polarization free energy of solvation -56.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds