Wall clock time and date at job start Mon Mar 30 2020 02:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30984 * 1 3 3 Si 1.86803 * 120.00189 * 2 1 4 4 H 1.48496 * 109.47191 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46534 * 299.99886 * 3 2 1 6 6 H 1.48498 * 109.47283 * 59.99829 * 3 2 1 7 7 C 1.40059 * 119.99689 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00093 * 179.97438 * 7 2 1 9 9 N 1.33448 * 120.00321 * 0.02562 * 7 2 1 10 10 C 1.31588 * 120.00093 * 179.97438 * 9 7 2 11 11 N 1.36255 * 119.99710 * 180.27712 * 10 9 7 12 12 C 1.46496 * 120.00284 * 359.71890 * 11 10 9 13 13 C 1.50703 * 109.47318 * 180.02562 * 12 11 10 14 14 C 1.38649 * 120.78759 * 269.71878 * 13 12 11 15 15 C 1.38211 * 119.16125 * 179.79517 * 14 13 12 16 16 N 1.31868 * 120.76099 * 0.49326 * 15 14 13 17 17 C 1.31872 * 121.72614 * 359.73762 * 16 15 14 18 18 C 1.38202 * 120.76414 * 0.02562 * 17 16 15 19 19 H 0.97005 * 119.99776 * 0.02562 * 1 2 3 20 20 H 1.08002 * 119.99790 * 359.97438 * 10 9 7 21 21 H 0.97004 * 119.99713 * 179.72667 * 11 10 9 22 22 H 1.08999 * 109.47567 * 300.00741 * 12 11 10 23 23 H 1.09005 * 109.47301 * 60.00611 * 12 11 10 24 24 H 1.08002 * 120.42094 * 0.02562 * 14 13 12 25 25 H 1.07994 * 119.61752 * 180.20826 * 15 14 13 26 26 H 1.08000 * 119.61458 * 180.02562 * 17 16 15 27 27 H 1.08004 * 120.41215 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3098 0.0000 0.0000 3 14 2.2439 1.6177 0.0000 4 1 3.7039 1.3464 -0.0006 5 1 1.8851 2.3963 -1.2126 6 1 1.8852 2.3965 1.2124 7 6 2.0101 -1.2130 0.0005 8 1 3.0901 -1.2131 0.0001 9 7 1.3428 -2.3687 0.0005 10 6 2.0008 -3.5083 0.0005 11 7 1.3194 -4.6882 -0.0052 12 6 -0.1455 -4.6882 -0.0051 13 6 -0.6479 -6.1090 -0.0113 14 6 -0.8901 -6.7709 -1.2053 15 6 -1.3464 -8.0751 -1.1719 16 7 -1.5604 -8.6855 -0.0227 17 6 -1.3455 -8.0855 1.1318 18 6 -0.8845 -6.7834 1.1767 19 1 -0.4850 0.8401 -0.0004 20 1 3.0808 -3.5083 0.0001 21 1 1.8044 -5.5283 -0.0092 22 1 -0.5089 -4.1786 0.8873 23 1 -0.5090 -4.1701 -0.8926 24 1 -0.7207 -6.2749 -2.1497 25 1 -1.5342 -8.5987 -2.0975 26 1 -1.5318 -8.6179 2.0528 27 1 -0.7108 -6.2973 2.1254 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238550161.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:05 Heat of formation + Delta-G solvation = 32.847022 kcal Electronic energy + Delta-G solvation = -12090.050410 eV Core-core repulsion = 9846.981841 eV Total energy + Delta-G solvation = -2243.068569 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.07208 -37.90519 -35.90772 -34.08677 -32.35924 -32.10668 -27.88407 -26.26933 -24.34044 -22.99228 -21.46585 -19.08937 -17.87776 -17.27851 -17.11680 -16.63970 -16.18058 -15.63733 -14.83460 -14.76931 -14.44926 -14.27835 -13.40615 -13.33365 -13.18368 -12.90609 -12.56862 -12.12870 -12.04440 -10.90184 -10.69032 -10.44374 -10.05870 -9.20680 -9.14405 -8.58457 -5.86298 0.22206 0.23005 1.30178 1.36976 1.53905 2.16387 2.23291 2.82126 3.33871 3.60731 3.72011 3.74958 3.91417 4.22061 4.23110 4.68054 4.69532 4.84074 4.95203 5.06028 5.09419 5.16871 5.51012 5.55112 5.78808 6.03357 6.78884 7.01839 7.27081 7.46895 8.40528 8.97526 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.082185 B = 0.005688 C = 0.005634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 340.612360 B = 4921.246180 C = 4968.507959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.019 3.981 3 Si 1.002 2.998 4 H -0.258 1.258 5 H -0.263 1.263 6 H -0.263 1.263 7 C -0.346 4.346 8 H 0.039 0.961 9 N -0.457 5.457 10 C 0.109 3.891 11 N -0.724 5.724 12 C 0.201 3.799 13 C -0.057 4.057 14 C -0.162 4.162 15 C 0.095 3.905 16 N -0.506 5.506 17 C 0.095 3.905 18 C -0.161 4.161 19 H 0.281 0.719 20 H 0.087 0.913 21 H 0.398 0.602 22 H 0.032 0.968 23 H 0.032 0.968 24 H 0.141 0.859 25 H 0.183 0.817 26 H 0.183 0.817 27 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.381 -10.761 -0.032 10.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.194 4.194 3 Si 0.822 3.178 4 H -0.182 1.182 5 H -0.188 1.188 6 H -0.188 1.188 7 C -0.492 4.492 8 H 0.056 0.944 9 N -0.175 5.175 10 C -0.175 4.175 11 N -0.370 5.370 12 C 0.076 3.924 13 C -0.065 4.065 14 C -0.182 4.182 15 C -0.061 4.061 16 N -0.216 5.216 17 C -0.061 4.061 18 C -0.182 4.182 19 H 0.090 0.910 20 H 0.104 0.896 21 H 0.233 0.767 22 H 0.050 0.950 23 H 0.050 0.950 24 H 0.159 0.841 25 H 0.200 0.800 26 H 0.200 0.800 27 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.825 -11.033 -0.035 11.389 hybrid contribution 1.647 1.461 0.003 2.201 sum -1.178 -9.572 -0.032 9.645 Atomic orbital electron populations 1.69903 1.09095 1.29609 1.38334 1.27023 0.95856 1.04075 0.92398 0.84835 0.78706 0.75293 0.78997 1.18167 1.18795 1.18783 1.20183 0.90940 0.89857 1.48199 0.94390 1.66607 1.40606 0.98175 1.12105 1.21879 0.91063 0.86429 1.18154 1.42792 1.02827 1.04472 1.86869 1.19408 0.82936 0.90453 0.99634 1.20511 0.96135 0.95370 0.94500 1.22265 1.00482 0.96606 0.98831 1.23156 0.94201 0.91665 0.97105 1.67731 1.15960 1.38664 0.99216 1.23157 0.94184 0.91801 0.96990 1.22260 1.00479 0.96522 0.98912 0.90952 0.89576 0.76741 0.95018 0.95021 0.84106 0.79974 0.79969 0.84095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -49.31 13.60 21.86 0.30 -49.02 15 2 C 0.02 1.05 5.52 85.26 0.47 1.52 15 3 Si 1.00 41.41 29.56 68.60 2.03 43.43 15 4 H -0.26 -10.28 7.11 99.48 0.71 -9.58 15 5 H -0.26 -10.29 7.11 99.48 0.71 -9.58 15 6 H -0.26 -10.28 7.11 99.48 0.71 -9.58 15 7 C -0.35 -20.68 9.74 84.89 0.83 -19.85 15 8 H 0.04 2.22 7.74 -2.91 -0.02 2.20 15 9 N -0.46 -27.28 9.19 -194.98 -1.79 -29.07 15 10 C 0.11 5.51 11.67 179.55 2.10 7.61 15 11 N -0.72 -29.82 5.61 -353.68 -1.98 -31.80 15 12 C 0.20 8.08 5.81 85.63 0.50 8.57 15 13 C -0.06 -1.74 5.29 -19.67 -0.10 -1.84 15 14 C -0.16 -4.30 9.82 22.36 0.22 -4.08 15 15 C 0.09 2.22 11.18 84.68 0.95 3.17 15 16 N -0.51 -12.90 10.36 -195.84 -2.03 -14.93 15 17 C 0.09 2.22 11.18 84.68 0.95 3.17 15 18 C -0.16 -4.30 9.82 22.36 0.22 -4.08 15 19 H 0.28 14.71 8.30 -92.70 -0.77 13.94 15 20 H 0.09 4.19 7.95 -2.91 -0.02 4.17 15 21 H 0.40 13.70 8.58 -92.71 -0.80 12.90 15 22 H 0.03 1.43 8.10 -2.39 -0.02 1.42 15 23 H 0.03 1.44 8.10 -2.38 -0.02 1.42 15 24 H 0.14 3.51 8.06 -2.91 -0.02 3.49 15 25 H 0.18 3.03 8.06 -2.91 -0.02 3.00 15 26 H 0.18 3.02 8.06 -2.91 -0.02 3.00 15 27 H 0.14 3.51 8.06 -2.91 -0.02 3.49 15 Total: -1.00 -69.93 250.68 3.02 -66.91 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 0.38 Total: 20.29 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: 6.12 Total: -5.82 kcal Atomic # 7 Polarization: -119.31 SS G_CDS: -5.51 Total: -124.82 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.43 kcal Total: -69.93 3.02 -66.91 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238550161.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.758 kcal (2) G-P(sol) polarization free energy of solvation -69.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds