Wall clock time and date at job start Mon Mar 30 2020 02:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00161 * 2 1 4 4 H 1.48498 * 109.47295 * 239.99839 * 3 2 1 5 5 H 1.48500 * 109.47035 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46845 * 119.99935 * 3 2 1 7 7 C 1.37875 * 119.99932 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00416 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99955 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47161 * 300.00507 * 9 7 2 11 11 N 1.46902 * 109.46577 * 60.00369 * 9 7 2 12 12 C 1.52997 * 109.47103 * 180.02562 * 9 7 2 13 13 C 1.52996 * 109.46894 * 175.00475 * 12 9 7 14 14 C 1.50705 * 109.47268 * 179.97438 * 13 12 9 15 15 C 1.38237 * 119.99892 * 269.72680 * 14 13 12 16 16 C 1.38240 * 119.99838 * 179.76027 * 15 14 13 17 17 C 1.38234 * 120.00013 * 0.51047 * 16 15 14 18 18 C 1.38241 * 119.99967 * 359.74008 * 17 16 15 19 19 C 1.38233 * 119.99962 * 89.99306 * 14 13 12 20 20 H 0.97003 * 119.99476 * 359.97438 * 1 2 3 21 21 H 1.00903 * 110.99827 * 60.00558 * 11 9 7 22 22 H 1.00905 * 110.99513 * 183.95166 * 11 9 7 23 23 H 1.09001 * 109.47096 * 295.00164 * 12 9 7 24 24 H 1.08994 * 109.47510 * 55.00027 * 12 9 7 25 25 H 1.09001 * 109.46995 * 299.99751 * 13 12 9 26 26 H 1.08998 * 109.47867 * 60.00073 * 13 12 9 27 27 H 1.08005 * 120.00140 * 359.97438 * 15 14 13 28 28 H 1.07998 * 119.99937 * 180.23106 * 16 15 14 29 29 H 1.07998 * 120.00156 * 179.72148 * 17 16 15 30 30 H 1.07994 * 119.99840 * 179.97438 * 18 17 16 31 31 H 1.07997 * 120.00527 * 0.02562 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8896 11 7 0.4060 -2.5766 -1.1998 12 6 2.2452 -3.6621 -0.0005 13 6 1.4843 -4.9835 0.1251 14 6 2.4635 -6.1291 0.1244 15 6 2.8285 -6.7256 -1.0679 16 6 3.7305 -7.7732 -1.0690 17 6 4.2593 -8.2311 0.1233 18 6 3.8903 -7.6379 1.3162 19 6 2.9923 -6.5869 1.3167 20 1 -0.4849 0.8401 0.0004 21 1 0.9638 -2.5251 -2.0390 22 1 -0.1579 -3.4133 -1.1912 23 1 2.8114 -3.6560 -0.9319 24 1 2.9293 -3.5553 0.8412 25 1 0.9180 -4.9895 1.0564 26 1 0.8002 -5.0904 -0.7167 27 1 2.4117 -6.3710 -1.9991 28 1 4.0186 -8.2368 -2.0009 29 1 4.9606 -9.0525 0.1229 30 1 4.3031 -7.9960 2.2477 31 1 2.7036 -6.1240 2.2487 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238569134.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:48 Heat of formation + Delta-G solvation = 8.408812 kcal Electronic energy + Delta-G solvation = -12619.503940 eV Core-core repulsion = 10478.915995 eV Total energy + Delta-G solvation = -2140.587946 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.12192 -35.69949 -32.74161 -31.15826 -30.74160 -28.18909 -26.08977 -23.47115 -22.41014 -20.88039 -19.53870 -16.75135 -16.17546 -15.09646 -15.02323 -14.46578 -14.11069 -13.41899 -13.25212 -13.14002 -12.78196 -12.23355 -12.01648 -11.42162 -11.09266 -10.91306 -10.79009 -10.61463 -10.49344 -10.03553 -9.55088 -8.95403 -8.78621 -8.43120 -8.32983 -6.86800 -5.79118 -3.93428 1.53421 1.53680 3.38928 3.43632 3.45991 3.94738 4.53969 5.00734 5.03260 5.13126 5.27371 5.45700 5.57503 5.67099 5.81120 6.00018 6.06134 6.18000 6.32113 6.40784 6.57883 6.61139 6.63669 6.87003 6.93527 7.05515 7.18268 7.65313 7.97869 8.33023 8.76057 9.12870 9.28512 9.75323 11.25535 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.057980 B = 0.006406 C = 0.006194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.813126 B = 4369.693564 C = 4519.432795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.082 3.918 3 Si 0.881 3.119 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.538 4.538 8 H 0.050 0.950 9 C 0.223 3.777 10 H 0.035 0.965 11 N -0.815 5.815 12 C -0.137 4.137 13 C -0.086 4.086 14 C -0.064 4.064 15 C -0.122 4.122 16 C -0.120 4.120 17 C -0.137 4.137 18 C -0.120 4.120 19 C -0.121 4.121 20 H 0.254 0.746 21 H 0.315 0.685 22 H 0.294 0.706 23 H 0.046 0.954 24 H 0.053 0.947 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.119 0.881 28 H 0.117 0.883 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.340 -13.887 -0.061 14.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.124 4.124 3 Si 0.709 3.291 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.205 1.205 7 C -0.576 4.576 8 H 0.068 0.932 9 C 0.114 3.886 10 H 0.053 0.947 11 N -0.341 5.341 12 C -0.177 4.177 13 C -0.124 4.124 14 C -0.064 4.064 15 C -0.140 4.140 16 C -0.139 4.139 17 C -0.155 4.155 18 C -0.138 4.138 19 C -0.139 4.139 20 H 0.064 0.936 21 H 0.126 0.874 22 H 0.104 0.896 23 H 0.065 0.935 24 H 0.071 0.929 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.137 0.863 28 H 0.135 0.865 29 H 0.134 0.866 30 H 0.135 0.865 31 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.811 -13.080 0.218 13.938 hybrid contribution 1.142 0.033 -0.247 1.169 sum 5.952 -13.047 -0.030 14.341 Atomic orbital electron populations 1.70102 1.05663 1.25530 1.47125 1.24957 0.94600 0.98474 0.94354 0.86882 0.79782 0.84027 0.78429 1.20445 1.21398 1.20473 1.20937 0.92134 0.90514 1.54058 0.93175 1.19006 0.88809 0.90618 0.90193 0.94739 1.59152 1.28692 1.41756 1.04510 1.22522 1.00179 0.94269 1.00742 1.20799 0.96233 0.93034 1.02323 1.20192 0.97248 0.96035 0.92939 1.21086 0.98490 0.96558 0.97836 1.21099 0.97589 0.97317 0.97847 1.21046 1.00986 1.00665 0.92835 1.21109 0.98102 0.96742 0.97870 1.21108 0.97763 0.97008 0.98003 0.93583 0.87407 0.89552 0.93513 0.92856 0.91370 0.91611 0.86278 0.86505 0.86635 0.86467 0.86115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.29 12.77 55.43 0.71 -24.58 16 2 C 0.08 2.35 5.39 -17.82 -0.10 2.25 16 3 Si 0.88 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.54 -15.06 8.73 -34.44 -0.30 -15.36 16 8 H 0.05 1.39 7.74 -52.49 -0.41 0.99 16 9 C 0.22 5.54 2.67 -68.86 -0.18 5.35 16 10 H 0.03 0.95 8.14 -51.93 -0.42 0.52 16 11 N -0.81 -19.22 8.49 -5.65 -0.05 -19.26 16 12 C -0.14 -2.79 4.78 -26.73 -0.13 -2.92 16 13 C -0.09 -1.46 5.11 -27.88 -0.14 -1.60 16 14 C -0.06 -0.99 5.13 -104.62 -0.54 -1.53 16 15 C -0.12 -1.73 9.70 -39.58 -0.38 -2.12 16 16 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 17 C -0.14 -1.65 10.05 -39.58 -0.40 -2.05 16 18 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 19 C -0.12 -1.73 9.70 -39.58 -0.38 -2.12 16 20 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 21 H 0.31 7.16 8.99 -39.29 -0.35 6.81 16 22 H 0.29 6.09 7.55 -39.29 -0.30 5.79 16 23 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.07 1.14 8.09 -51.93 -0.42 0.72 16 26 H 0.07 1.07 6.81 -51.93 -0.35 0.71 16 27 H 0.12 1.57 8.06 -52.48 -0.42 1.15 16 28 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 29 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 30 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 31 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 265.67 15.07 4.00 4.00 Total: -1.00 -30.22 265.67 -8.05 -38.27 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -4.35 Total: 8.81 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: -3.35 Total: -23.91 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: 0.66 Total: -43.84 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.22 -8.05 -38.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238569134.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.681 kcal (2) G-P(sol) polarization free energy of solvation -30.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds