Wall clock time and date at job start Mon Mar 30 2020 02:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00161 * 2 1 4 4 H 1.48498 * 109.47295 * 239.99839 * 3 2 1 5 5 H 1.48500 * 109.47035 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46845 * 119.99935 * 3 2 1 7 7 C 1.37875 * 119.99932 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00416 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99955 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47161 * 300.00507 * 9 7 2 11 11 N 1.46902 * 109.46577 * 60.00369 * 9 7 2 12 12 C 1.52997 * 109.47103 * 180.02562 * 9 7 2 13 13 C 1.52996 * 109.46894 * 175.00475 * 12 9 7 14 14 C 1.50705 * 109.47268 * 179.97438 * 13 12 9 15 15 C 1.38237 * 119.99892 * 269.72680 * 14 13 12 16 16 C 1.38240 * 119.99838 * 179.76027 * 15 14 13 17 17 C 1.38234 * 120.00013 * 0.51047 * 16 15 14 18 18 C 1.38241 * 119.99967 * 359.74008 * 17 16 15 19 19 C 1.38233 * 119.99962 * 89.99306 * 14 13 12 20 20 H 0.97003 * 119.99476 * 359.97438 * 1 2 3 21 21 H 1.00903 * 110.99827 * 60.00558 * 11 9 7 22 22 H 1.00905 * 110.99513 * 183.95166 * 11 9 7 23 23 H 1.09001 * 109.47096 * 295.00164 * 12 9 7 24 24 H 1.08994 * 109.47510 * 55.00027 * 12 9 7 25 25 H 1.09001 * 109.46995 * 299.99751 * 13 12 9 26 26 H 1.08998 * 109.47867 * 60.00073 * 13 12 9 27 27 H 1.08005 * 120.00140 * 359.97438 * 15 14 13 28 28 H 1.07998 * 119.99937 * 180.23106 * 16 15 14 29 29 H 1.07998 * 120.00156 * 179.72148 * 17 16 15 30 30 H 1.07994 * 119.99840 * 179.97438 * 18 17 16 31 31 H 1.07997 * 120.00527 * 0.02562 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8896 11 7 0.4060 -2.5766 -1.1998 12 6 2.2452 -3.6621 -0.0005 13 6 1.4843 -4.9835 0.1251 14 6 2.4635 -6.1291 0.1244 15 6 2.8285 -6.7256 -1.0679 16 6 3.7305 -7.7732 -1.0690 17 6 4.2593 -8.2311 0.1233 18 6 3.8903 -7.6379 1.3162 19 6 2.9923 -6.5869 1.3167 20 1 -0.4849 0.8401 0.0004 21 1 0.9638 -2.5251 -2.0390 22 1 -0.1579 -3.4133 -1.1912 23 1 2.8114 -3.6560 -0.9319 24 1 2.9293 -3.5553 0.8412 25 1 0.9180 -4.9895 1.0564 26 1 0.8002 -5.0904 -0.7167 27 1 2.4117 -6.3710 -1.9991 28 1 4.0186 -8.2368 -2.0009 29 1 4.9606 -9.0525 0.1229 30 1 4.3031 -7.9960 2.2477 31 1 2.7036 -6.1240 2.2487 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238569134.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:47 Heat of formation + Delta-G solvation = -10.051864 kcal Electronic energy + Delta-G solvation = -12620.304455 eV Core-core repulsion = 10478.915995 eV Total energy + Delta-G solvation = -2141.388461 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.18686 -37.44814 -34.45253 -32.92852 -31.73913 -29.70237 -28.03076 -25.11468 -23.41679 -22.20233 -21.26885 -18.50770 -17.53343 -16.62430 -16.32605 -16.06693 -15.85297 -14.92951 -14.67765 -14.31246 -14.15203 -13.83207 -13.51308 -13.09947 -12.73450 -12.63450 -12.41793 -12.08768 -11.95889 -11.58688 -11.40269 -10.99174 -10.51687 -9.79449 -9.56407 -8.74625 -7.95446 -6.17403 0.49479 0.52612 1.43412 1.44436 1.51900 2.47638 2.91717 3.27771 3.91054 3.96049 4.19596 4.30060 4.31463 4.43389 4.56946 4.67956 4.70200 4.73075 4.99314 5.10554 5.19288 5.21834 5.36651 5.61276 5.63538 5.64256 5.79066 5.83060 6.16764 6.24477 6.71244 7.17537 7.37166 7.55793 9.07698 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.057980 B = 0.006406 C = 0.006194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.813126 B = 4369.693564 C = 4519.432795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.032 3.968 3 Si 0.947 3.053 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.557 4.557 8 H 0.046 0.954 9 C 0.224 3.776 10 H 0.001 0.999 11 N -0.825 5.825 12 C -0.119 4.119 13 C -0.074 4.074 14 C -0.088 4.088 15 C -0.135 4.135 16 C -0.123 4.123 17 C -0.134 4.134 18 C -0.123 4.123 19 C -0.137 4.137 20 H 0.254 0.746 21 H 0.320 0.680 22 H 0.311 0.689 23 H 0.044 0.956 24 H 0.042 0.958 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.123 0.877 28 H 0.143 0.857 29 H 0.147 0.853 30 H 0.142 0.858 31 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.738 -15.049 -0.432 16.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.171 4.171 3 Si 0.772 3.228 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.596 4.596 8 H 0.064 0.936 9 C 0.114 3.886 10 H 0.019 0.981 11 N -0.353 5.353 12 C -0.159 4.159 13 C -0.111 4.111 14 C -0.088 4.088 15 C -0.153 4.153 16 C -0.141 4.141 17 C -0.152 4.152 18 C -0.141 4.141 19 C -0.155 4.155 20 H 0.063 0.937 21 H 0.132 0.868 22 H 0.123 0.877 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.141 0.859 28 H 0.161 0.839 29 H 0.165 0.835 30 H 0.160 0.840 31 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.218 -14.256 -0.154 15.553 hybrid contribution 0.732 0.309 -0.123 0.804 sum 6.950 -13.947 -0.276 15.585 Atomic orbital electron populations 1.70234 1.07087 1.26274 1.48236 1.25711 0.95439 1.01910 0.94049 0.85832 0.78521 0.79788 0.78623 1.19859 1.21028 1.19848 1.21353 0.92255 0.92242 1.53750 0.93595 1.18814 0.89062 0.91375 0.89338 0.98077 1.58926 1.29009 1.43153 1.04215 1.22197 0.98991 0.94654 1.00063 1.20582 0.96318 0.92016 1.02232 1.20089 0.98118 0.96438 0.94152 1.21258 0.99197 0.97305 0.97517 1.21448 0.96687 0.96567 0.99401 1.21478 1.00621 1.00854 0.92234 1.21439 0.97306 0.95912 0.99464 1.21271 0.98582 0.97991 0.97702 0.93706 0.86830 0.87698 0.93704 0.93943 0.91897 0.91122 0.85854 0.83899 0.83519 0.83997 0.86146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -53.15 12.77 21.45 0.27 -52.87 16 2 C 0.03 1.84 5.39 84.65 0.46 2.30 16 3 Si 0.95 44.70 29.54 68.60 2.03 46.73 16 4 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 6 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 7 C -0.56 -31.61 8.73 25.60 0.22 -31.39 16 8 H 0.05 2.57 7.74 -2.91 -0.02 2.55 16 9 C 0.22 11.34 2.67 44.17 0.12 11.46 16 10 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 11 N -0.82 -39.27 8.49 -171.79 -1.46 -40.73 16 12 C -0.12 -4.91 4.78 30.59 0.15 -4.77 16 13 C -0.07 -2.51 5.11 29.85 0.15 -2.36 16 14 C -0.09 -2.66 5.13 -19.86 -0.10 -2.76 16 15 C -0.13 -3.64 9.70 22.27 0.22 -3.42 16 16 C -0.12 -2.75 10.05 22.27 0.22 -2.52 16 17 C -0.13 -2.77 10.05 22.27 0.22 -2.55 16 18 C -0.12 -2.81 10.05 22.27 0.22 -2.58 16 19 C -0.14 -3.82 9.70 22.27 0.22 -3.60 16 20 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 21 H 0.32 14.59 8.99 -89.69 -0.81 13.78 16 22 H 0.31 12.92 7.55 -89.69 -0.68 12.24 16 23 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 24 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.06 2.16 8.09 -2.39 -0.02 2.14 16 26 H 0.07 2.28 6.81 -2.39 -0.02 2.26 16 27 H 0.12 3.11 8.06 -2.91 -0.02 3.09 16 28 H 0.14 2.38 8.06 -2.91 -0.02 2.35 16 29 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 30 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 31 H 0.12 3.22 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -64.20 265.67 2.57 -61.63 By element: Atomic # 1 Polarization: 27.81 SS G_CDS: -0.37 Total: 27.45 kcal Atomic # 6 Polarization: -44.29 SS G_CDS: 2.10 Total: -42.20 kcal Atomic # 7 Polarization: -92.42 SS G_CDS: -1.18 Total: -93.60 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -64.20 2.57 -61.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238569134.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.574 kcal (2) G-P(sol) polarization free energy of solvation -64.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds