Wall clock time and date at job start Mon Mar 30 2020 02:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00440 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 0.02562 * 7 2 1 10 10 H 1.08992 * 109.47799 * 59.99946 * 9 7 2 11 11 N 1.46906 * 109.46675 * 299.99446 * 9 7 2 12 12 C 1.53002 * 109.46931 * 180.02562 * 9 7 2 13 13 C 1.52994 * 109.47323 * 184.99880 * 12 9 7 14 14 C 1.50699 * 109.47233 * 179.97438 * 13 12 9 15 15 C 1.38233 * 120.00159 * 269.72425 * 14 13 12 16 16 C 1.38231 * 119.99911 * 179.76739 * 15 14 13 17 17 C 1.38238 * 120.00121 * 0.51010 * 16 15 14 18 18 C 1.38232 * 119.99863 * 359.74047 * 17 16 15 19 19 C 1.38231 * 119.99940 * 0.02562 * 18 17 16 20 20 H 0.97000 * 119.99706 * 179.97438 * 1 2 3 21 21 H 1.00899 * 110.99290 * 176.04796 * 11 9 7 22 22 H 1.00897 * 111.00195 * 299.99919 * 11 9 7 23 23 H 1.09006 * 109.46551 * 304.99729 * 12 9 7 24 24 H 1.09000 * 109.47511 * 64.99378 * 12 9 7 25 25 H 1.09002 * 109.46700 * 299.99490 * 13 12 9 26 26 H 1.09000 * 109.47237 * 59.99330 * 13 12 9 27 27 H 1.08004 * 119.99632 * 359.97438 * 15 14 13 28 28 H 1.08004 * 119.99848 * 180.22998 * 16 15 14 29 29 H 1.08000 * 119.99578 * 179.72840 * 17 16 15 30 30 H 1.08000 * 119.99743 * 179.97438 * 18 17 16 31 31 H 1.07998 * 119.99688 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.6247 -2.5564 -0.8919 11 7 0.4061 -2.5777 1.1975 12 6 2.2453 -3.6621 -0.0015 13 6 1.4846 -4.9835 -0.1283 14 6 2.4639 -6.1289 -0.1287 15 6 2.9885 -6.5893 -1.3219 16 6 3.8905 -7.6368 -1.3217 17 6 4.2599 -8.2308 -0.1294 18 6 3.7313 -7.7737 1.0633 19 6 2.8330 -6.7230 1.0636 20 1 -0.4850 -0.8401 -0.0004 21 1 -0.1579 -3.4143 1.1882 22 1 0.9638 -2.5269 2.0368 23 1 2.9300 -3.5548 -0.8428 24 1 2.8109 -3.6565 0.9303 25 1 0.7999 -5.0907 0.7130 26 1 0.9190 -4.9891 -1.0601 27 1 2.6961 -6.1285 -2.2538 28 1 4.3031 -7.9942 -2.2537 29 1 4.9612 -9.0520 -0.1298 30 1 4.0196 -8.2380 1.9948 31 1 2.4198 -6.3662 1.9955 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238682431.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:50 Heat of formation + Delta-G solvation = -16.633967 kcal Electronic energy + Delta-G solvation = -12658.787007 eV Core-core repulsion = 10517.113125 eV Total energy + Delta-G solvation = -2141.673882 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.25434 -37.75544 -34.59263 -32.82592 -31.79056 -29.87026 -27.70130 -24.99146 -23.47015 -22.41666 -21.50085 -18.88334 -17.60622 -16.61777 -16.28658 -16.02918 -15.62947 -15.36855 -14.92160 -14.30311 -14.23765 -13.82167 -13.59147 -13.23761 -12.63904 -12.57642 -12.32411 -12.02492 -11.92880 -11.70572 -11.59747 -10.60922 -10.44079 -9.84461 -9.64353 -9.17980 -8.35572 -6.23311 0.43984 0.47711 1.55300 1.63316 1.82382 2.64318 2.86472 3.33178 3.81908 3.88423 4.13869 4.19954 4.22264 4.27530 4.43688 4.58634 4.62499 4.63619 4.85262 4.96323 5.12226 5.15301 5.24459 5.45740 5.56225 5.59262 5.74709 5.98168 6.11993 6.25680 6.73645 6.80769 7.12148 7.69778 8.99118 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.057697 B = 0.006438 C = 0.006222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.178135 B = 4348.340770 C = 4499.124970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.014 4.014 3 Si 1.110 2.890 4 H -0.285 1.285 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.632 4.632 8 H 0.036 0.964 9 C 0.206 3.794 10 H -0.002 1.002 11 N -0.840 5.840 12 C -0.112 4.112 13 C -0.074 4.074 14 C -0.090 4.090 15 C -0.137 4.137 16 C -0.123 4.123 17 C -0.133 4.133 18 C -0.123 4.123 19 C -0.135 4.135 20 H 0.277 0.723 21 H 0.317 0.683 22 H 0.328 0.672 23 H 0.041 0.959 24 H 0.044 0.956 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.120 0.880 28 H 0.143 0.857 29 H 0.148 0.852 30 H 0.144 0.856 31 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.264 -15.572 0.463 17.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.218 4.218 3 Si 0.933 3.067 4 H -0.211 1.211 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.670 4.670 8 H 0.054 0.946 9 C 0.096 3.904 10 H 0.016 0.984 11 N -0.370 5.370 12 C -0.151 4.151 13 C -0.112 4.112 14 C -0.090 4.090 15 C -0.156 4.156 16 C -0.141 4.141 17 C -0.150 4.150 18 C -0.140 4.140 19 C -0.153 4.153 20 H 0.089 0.911 21 H 0.130 0.870 22 H 0.140 0.860 23 H 0.059 0.941 24 H 0.063 0.937 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.138 0.862 28 H 0.161 0.839 29 H 0.166 0.834 30 H 0.162 0.838 31 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.707 -13.276 0.185 14.875 hybrid contribution 0.502 -2.339 0.130 2.396 sum 7.210 -15.615 0.315 17.202 Atomic orbital electron populations 1.70673 1.07755 1.32065 1.45164 1.27005 0.96760 1.05640 0.92363 0.83044 0.74140 0.72107 0.77418 1.21096 1.20111 1.20089 1.22212 0.93293 0.93362 1.58139 0.94579 1.19002 0.89657 0.92825 0.88869 0.98406 1.59127 1.29308 1.43603 1.04956 1.22054 0.98713 0.94292 1.00090 1.20585 0.96374 0.91962 1.02240 1.20053 0.98232 0.96467 0.94225 1.21266 0.98605 0.98057 0.97625 1.21447 0.97192 0.95880 0.99543 1.21495 1.00534 1.00811 0.92189 1.21455 0.96647 0.96474 0.99463 1.21249 0.99248 0.97318 0.97451 0.91118 0.87015 0.86020 0.94054 0.93694 0.91020 0.91874 0.86212 0.83907 0.83385 0.83803 0.85896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.60 13.51 21.45 0.29 -57.31 16 2 C -0.01 -0.84 5.39 84.66 0.46 -0.39 16 3 Si 1.11 51.71 29.90 68.60 2.05 53.76 16 4 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 5 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 7 C -0.63 -36.41 8.73 25.60 0.22 -36.19 16 8 H 0.04 2.08 7.74 -2.91 -0.02 2.06 16 9 C 0.21 10.40 2.29 44.17 0.10 10.50 16 10 H 0.00 -0.11 8.01 -2.39 -0.02 -0.13 16 11 N -0.84 -39.11 7.74 -171.79 -1.33 -40.44 16 12 C -0.11 -4.64 4.78 30.59 0.15 -4.50 16 13 C -0.07 -2.50 5.11 29.85 0.15 -2.35 16 14 C -0.09 -2.71 5.13 -19.87 -0.10 -2.81 16 15 C -0.14 -3.81 9.70 22.27 0.22 -3.59 16 16 C -0.12 -2.77 10.05 22.27 0.22 -2.55 16 17 C -0.13 -2.71 10.05 22.27 0.22 -2.49 16 18 C -0.12 -2.71 10.05 22.27 0.22 -2.48 16 19 C -0.13 -3.62 9.70 22.27 0.22 -3.40 16 20 H 0.28 17.51 6.39 -92.71 -0.59 16.92 16 21 H 0.32 12.68 7.55 -89.69 -0.68 12.00 16 22 H 0.33 14.78 8.99 -89.70 -0.81 13.97 16 23 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 24 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.07 2.28 6.81 -2.39 -0.02 2.26 16 26 H 0.06 2.15 8.08 -2.39 -0.02 2.13 16 27 H 0.12 3.20 8.06 -2.91 -0.02 3.18 16 28 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 29 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 30 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 31 H 0.12 3.08 8.06 -2.91 -0.02 3.06 16 Total: -1.00 -66.54 263.59 2.90 -63.64 By element: Atomic # 1 Polarization: 30.79 SS G_CDS: -0.19 Total: 30.60 kcal Atomic # 6 Polarization: -52.33 SS G_CDS: 2.08 Total: -50.25 kcal Atomic # 7 Polarization: -96.71 SS G_CDS: -1.04 Total: -97.75 kcal Atomic # 14 Polarization: 51.71 SS G_CDS: 2.05 Total: 53.76 kcal Total: -66.54 2.90 -63.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238682431.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.002 kcal (2) G-P(sol) polarization free energy of solvation -66.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds