Wall clock time and date at job start Mon Mar 30 2020 02:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38904 * 119.69825 * 2 1 4 4 C 1.38171 * 120.61922 * 179.72124 * 3 2 1 5 5 C 1.38753 * 120.02634 * 0.56359 * 4 3 2 6 6 N 1.38729 * 120.29370 * 179.74209 * 5 4 3 7 7 C 1.46902 * 110.99808 * 59.72200 * 6 5 4 8 8 C 1.46895 * 111.00301 * 295.77111 * 6 5 4 9 9 C 1.41535 * 119.41183 * 359.47026 * 5 4 3 10 10 C 1.41048 * 120.30526 * 180.27256 * 9 5 4 11 11 H 1.07996 * 120.00163 * 24.67666 * 10 9 5 12 12 C 1.39932 * 119.99926 * 204.67140 * 10 9 5 13 13 N 1.30880 * 119.99841 * 17.73751 * 12 10 9 14 14 Si 1.86801 * 119.99681 * 197.74144 * 12 10 9 15 15 H 1.48493 * 109.47092 * 60.00173 * 14 12 10 16 16 H 1.48505 * 109.46624 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47065 * 299.99821 * 14 12 10 18 18 C 1.36443 * 119.69766 * 180.02562 * 2 1 3 19 19 H 1.08998 * 109.46955 * 269.97581 * 1 2 3 20 20 H 1.08998 * 109.46992 * 29.96861 * 1 2 3 21 21 H 1.08993 * 109.47720 * 149.97283 * 1 2 3 22 22 H 1.07992 * 119.69383 * 0.03311 * 3 2 1 23 23 H 1.07993 * 119.98409 * 180.28511 * 4 3 2 24 24 H 1.09004 * 109.46893 * 59.99945 * 7 6 5 25 25 H 1.09000 * 109.47591 * 299.99899 * 7 6 5 26 26 H 1.09003 * 109.47212 * 179.97438 * 7 6 5 27 27 H 1.08998 * 109.47282 * 183.94731 * 8 6 5 28 28 H 1.09000 * 109.47200 * 303.95203 * 8 6 5 29 29 H 1.09002 * 109.47341 * 63.95023 * 8 6 5 30 30 H 0.97001 * 119.99221 * 179.97438 * 13 12 10 31 31 H 1.07996 * 120.02545 * 0.02562 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.2066 0.0000 4 6 3.5767 1.2288 0.0058 5 6 4.2903 0.0388 -0.0001 6 7 5.6775 0.0547 0.0002 7 6 6.1957 0.7461 1.1883 8 6 6.1974 0.6632 -1.2315 9 6 3.5904 -1.1913 -0.0007 10 6 4.2968 -2.4122 -0.0009 11 1 5.3027 -2.4540 0.3898 12 6 3.6942 -3.5691 -0.5073 13 7 2.6445 -3.4742 -1.2832 14 14 4.3880 -5.2489 -0.0757 15 1 4.3470 -5.4380 1.3966 16 1 3.5750 -6.3039 -0.7326 17 1 5.7931 -5.3403 -0.5476 18 6 2.1830 -1.1852 -0.0005 19 1 -0.3633 -0.0004 1.0277 20 1 -0.3633 0.8903 -0.5133 21 1 -0.3634 -0.8896 -0.5142 22 1 1.6454 2.1360 0.0005 23 1 4.1013 2.1727 0.0104 24 1 5.8518 0.2328 2.0863 25 1 5.8345 1.7745 1.1967 26 1 7.2855 0.7437 1.1636 27 1 7.2855 0.5997 -1.2370 28 1 5.7981 0.1323 -2.0957 29 1 5.8944 1.7093 -1.2760 30 1 2.2271 -4.2763 -1.6345 31 1 1.6385 -2.1179 -0.0014 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000257969826.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:50 Heat of formation + Delta-G solvation = 19.776244 kcal Electronic energy + Delta-G solvation = -13301.137969 eV Core-core repulsion = 11161.042953 eV Total energy + Delta-G solvation = -2140.095017 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.42078 -35.62431 -33.72872 -30.57171 -29.47339 -26.78742 -25.78980 -25.27189 -22.42269 -20.92206 -18.99707 -16.93389 -15.60410 -15.00809 -14.35064 -14.03201 -13.68310 -12.86872 -12.71859 -12.64721 -12.53541 -11.71675 -11.54420 -11.39521 -11.10705 -11.02986 -10.94852 -10.79307 -10.55199 -10.18172 -9.68715 -9.49750 -9.07642 -7.35606 -7.34032 -7.10993 -6.67244 -4.22873 2.80307 2.97214 3.11284 3.15364 3.29893 3.99733 4.65353 5.04821 5.62190 5.92894 6.02227 6.03354 6.16947 6.18607 6.21550 6.34946 6.44489 6.49588 6.56992 6.60388 6.70200 7.14448 7.26201 7.46422 7.52499 7.80802 7.93425 7.97207 8.18299 8.36641 8.52335 8.79867 8.98045 9.20635 10.24104 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.023892 B = 0.014954 C = 0.010010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.679998 B = 1871.984379 C = 2796.467696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.079 4.079 3 C -0.238 4.238 4 C -0.112 4.112 5 C -0.048 4.048 6 N -0.478 5.478 7 C 0.034 3.966 8 C 0.039 3.961 9 C 0.132 3.868 10 C -0.430 4.430 11 H 0.088 0.912 12 C 0.072 3.928 13 N -0.794 5.794 14 Si 0.908 3.092 15 H -0.264 1.264 16 H -0.281 1.281 17 H -0.265 1.265 18 C -0.157 4.157 19 H 0.051 0.949 20 H 0.047 0.953 21 H 0.055 0.945 22 H 0.083 0.917 23 H 0.082 0.918 24 H 0.062 0.938 25 H 0.014 0.986 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.012 0.988 30 H 0.279 0.721 31 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.388 2.656 1.543 3.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.079 4.079 3 C -0.258 4.258 4 C -0.133 4.133 5 C -0.143 4.143 6 N -0.198 5.198 7 C -0.113 4.113 8 C -0.109 4.109 9 C 0.129 3.871 10 C -0.459 4.459 11 H 0.106 0.894 12 C -0.146 4.146 13 N -0.420 5.420 14 Si 0.733 3.267 15 H -0.189 1.189 16 H -0.206 1.206 17 H -0.190 1.190 18 C -0.176 4.176 19 H 0.069 0.931 20 H 0.066 0.934 21 H 0.074 0.926 22 H 0.101 0.899 23 H 0.100 0.900 24 H 0.081 0.919 25 H 0.033 0.967 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.031 0.969 30 H 0.090 0.910 31 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.416 2.007 1.405 2.829 hybrid contribution -0.006 0.196 0.019 0.197 sum 1.410 2.203 1.424 2.978 Atomic orbital electron populations 1.20660 0.94007 1.00903 1.00320 1.19267 0.93946 0.93887 1.00816 1.20023 0.93363 0.95531 1.16916 1.20940 0.94542 0.96123 1.01651 1.18479 0.86499 0.92609 1.16733 1.58899 1.07620 1.52426 1.00832 1.22359 0.98642 0.95854 0.94487 1.22305 0.98647 0.96164 0.93760 1.17437 0.91121 0.91263 0.87298 1.19523 1.01329 0.91428 1.33583 0.89396 1.26018 0.94189 1.01527 0.92841 1.69867 1.18326 1.31414 1.22372 0.86369 0.79854 0.80609 0.79881 1.18906 1.20576 1.18958 1.20937 0.94240 0.96223 1.06239 0.93053 0.93371 0.92588 0.89863 0.89992 0.91947 0.96705 0.92873 0.92917 0.91649 0.96903 0.90979 0.86225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.98 9.99 36.01 0.36 -1.62 16 2 C -0.08 -1.87 5.84 -105.02 -0.61 -2.49 16 3 C -0.24 -5.53 9.68 -39.36 -0.38 -5.91 16 4 C -0.11 -2.63 8.60 -39.42 -0.34 -2.97 16 5 C -0.05 -1.19 4.73 -83.29 -0.39 -1.59 16 6 N -0.48 -10.64 4.18 -186.35 -0.78 -11.42 16 7 C 0.03 0.64 9.33 60.07 0.56 1.20 16 8 C 0.04 0.75 9.32 60.06 0.56 1.31 16 9 C 0.13 3.57 5.59 -106.63 -0.60 2.98 16 10 C -0.43 -11.52 8.69 -37.88 -0.33 -11.85 16 11 H 0.09 2.35 7.59 -52.49 -0.40 1.95 16 12 C 0.07 1.81 5.14 -17.32 -0.09 1.72 16 13 N -0.79 -20.60 10.96 55.55 0.61 -19.99 16 14 Si 0.91 18.99 29.60 -169.99 -5.03 13.96 16 15 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 16 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 17 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 18 C -0.16 -4.11 8.26 -39.29 -0.32 -4.43 16 19 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 20 H 0.05 0.84 8.08 -51.93 -0.42 0.42 16 21 H 0.06 1.06 8.07 -51.93 -0.42 0.64 16 22 H 0.08 1.74 8.06 -52.49 -0.42 1.32 16 23 H 0.08 1.76 7.04 -52.49 -0.37 1.39 16 24 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 25 H 0.01 0.26 7.10 -51.93 -0.37 -0.10 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.06 1.35 8.12 -51.93 -0.42 0.93 16 29 H 0.01 0.23 7.48 -51.93 -0.39 -0.16 16 30 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 31 H 0.12 3.21 6.16 -52.49 -0.32 2.89 16 LS Contribution 259.80 15.07 3.92 3.92 Total: -1.00 -27.73 259.80 -7.23 -34.96 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -4.36 Total: 2.21 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: -1.59 Total: -23.64 kcal Atomic # 7 Polarization: -31.24 SS G_CDS: -0.17 Total: -31.41 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.96 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -27.73 -7.23 -34.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257969826.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.736 kcal (2) G-P(sol) polarization free energy of solvation -27.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds